Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03270

Experiment: m.b. D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03250 and PGA1_c03260 overlap by 4 nucleotidesPGA1_c03260 and PGA1_c03270 overlap by 4 nucleotidesPGA1_c03270 and PGA1_c03280 are separated by 11 nucleotides PGA1_c03250: PGA1_c03250 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 311,094 to 311,585 _c03250 PGA1_c03260: PGA1_c03260 - hypothetical protein, at 311,582 to 312,394 _c03260 PGA1_c03270: PGA1_c03270 - molybdopterin molybdenumtransferase MoeA, at 312,391 to 313,647 _c03270 PGA1_c03280: PGA1_c03280 - hypothetical protein, at 313,659 to 314,672 _c03280 Position (kb) 312 313 314Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 311.411 kb on - strand, within PGA1_c03250at 311.411 kb on - strand, within PGA1_c03250at 311.420 kb on + strand, within PGA1_c03250at 311.422 kb on - strand, within PGA1_c03250at 311.452 kb on + strand, within PGA1_c03250at 311.499 kb on + strand, within PGA1_c03250at 311.508 kb on + strand, within PGA1_c03250at 311.537 kb on - strandat 311.598 kb on + strandat 311.617 kb on - strandat 311.630 kb on + strandat 311.637 kb on + strandat 311.637 kb on + strandat 311.668 kb on - strand, within PGA1_c03260at 311.707 kb on - strand, within PGA1_c03260at 311.757 kb on - strand, within PGA1_c03260at 311.841 kb on + strand, within PGA1_c03260at 311.871 kb on + strand, within PGA1_c03260at 311.871 kb on + strand, within PGA1_c03260at 311.871 kb on + strand, within PGA1_c03260at 311.913 kb on + strand, within PGA1_c03260at 311.952 kb on + strand, within PGA1_c03260at 311.962 kb on + strand, within PGA1_c03260at 311.975 kb on - strand, within PGA1_c03260at 311.984 kb on - strand, within PGA1_c03260at 311.990 kb on + strand, within PGA1_c03260at 311.998 kb on - strand, within PGA1_c03260at 312.016 kb on + strand, within PGA1_c03260at 312.048 kb on + strand, within PGA1_c03260at 312.050 kb on + strand, within PGA1_c03260at 312.050 kb on + strand, within PGA1_c03260at 312.050 kb on + strand, within PGA1_c03260at 312.050 kb on + strand, within PGA1_c03260at 312.056 kb on - strand, within PGA1_c03260at 312.058 kb on - strand, within PGA1_c03260at 312.121 kb on + strand, within PGA1_c03260at 312.162 kb on + strand, within PGA1_c03260at 312.187 kb on + strand, within PGA1_c03260at 312.207 kb on - strand, within PGA1_c03260at 312.226 kb on - strand, within PGA1_c03260at 312.236 kb on + strand, within PGA1_c03260at 312.265 kb on + strand, within PGA1_c03260at 312.292 kb on - strand, within PGA1_c03260at 312.345 kb on - strandat 312.345 kb on - strandat 312.364 kb on + strandat 312.442 kb on + strandat 312.536 kb on + strand, within PGA1_c03270at 312.618 kb on - strand, within PGA1_c03270at 312.692 kb on + strand, within PGA1_c03270at 312.747 kb on + strand, within PGA1_c03270at 312.755 kb on - strand, within PGA1_c03270at 312.874 kb on + strand, within PGA1_c03270at 312.887 kb on - strand, within PGA1_c03270at 312.893 kb on - strand, within PGA1_c03270at 312.971 kb on + strand, within PGA1_c03270at 313.011 kb on + strand, within PGA1_c03270at 313.069 kb on - strand, within PGA1_c03270at 313.069 kb on - strand, within PGA1_c03270at 313.137 kb on + strand, within PGA1_c03270at 313.137 kb on - strand, within PGA1_c03270at 313.150 kb on - strand, within PGA1_c03270at 313.150 kb on - strand, within PGA1_c03270at 313.202 kb on + strand, within PGA1_c03270at 313.350 kb on + strand, within PGA1_c03270at 313.402 kb on + strand, within PGA1_c03270at 313.534 kb on - strandat 313.534 kb on - strandat 313.534 kb on - strandat 313.560 kb on + strandat 313.610 kb on - strandat 313.641 kb on + strandat 313.669 kb on - strandat 313.699 kb on - strandat 313.699 kb on - strandat 313.699 kb on - strandat 313.699 kb on - strandat 313.802 kb on - strand, within PGA1_c03280at 313.847 kb on + strand, within PGA1_c03280at 313.855 kb on - strand, within PGA1_c03280at 314.042 kb on - strand, within PGA1_c03280at 314.042 kb on - strand, within PGA1_c03280at 314.044 kb on + strand, within PGA1_c03280at 314.109 kb on - strand, within PGA1_c03280at 314.121 kb on + strand, within PGA1_c03280at 314.215 kb on + strand, within PGA1_c03280at 314.299 kb on - strand, within PGA1_c03280at 314.342 kb on - strand, within PGA1_c03280at 314.380 kb on + strand, within PGA1_c03280at 314.419 kb on - strand, within PGA1_c03280at 314.426 kb on + strand, within PGA1_c03280at 314.434 kb on - strand, within PGA1_c03280at 314.451 kb on - strand, within PGA1_c03280at 314.504 kb on + strand, within PGA1_c03280at 314.613 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml
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311,411 - PGA1_c03250 0.64 +1.2
311,411 - PGA1_c03250 0.64 -2.1
311,420 + PGA1_c03250 0.66 +1.5
311,422 - PGA1_c03250 0.67 -0.4
311,452 + PGA1_c03250 0.73 +0.9
311,499 + PGA1_c03250 0.82 +0.7
311,508 + PGA1_c03250 0.84 +0.2
311,537 - +0.1
311,598 + +0.8
311,617 - -1.0
311,630 + +0.5
311,637 + +1.3
311,637 + +0.3
311,668 - PGA1_c03260 0.11 -1.2
311,707 - PGA1_c03260 0.15 -1.1
311,757 - PGA1_c03260 0.22 -1.5
311,841 + PGA1_c03260 0.32 -0.2
311,871 + PGA1_c03260 0.36 -1.0
311,871 + PGA1_c03260 0.36 +1.1
311,871 + PGA1_c03260 0.36 +1.4
311,913 + PGA1_c03260 0.41 -0.1
311,952 + PGA1_c03260 0.46 +0.4
311,962 + PGA1_c03260 0.47 -3.2
311,975 - PGA1_c03260 0.48 +0.2
311,984 - PGA1_c03260 0.49 +0.0
311,990 + PGA1_c03260 0.50 +0.7
311,998 - PGA1_c03260 0.51 -0.4
312,016 + PGA1_c03260 0.53 +0.8
312,048 + PGA1_c03260 0.57 +1.7
312,050 + PGA1_c03260 0.58 +0.0
312,050 + PGA1_c03260 0.58 -1.5
312,050 + PGA1_c03260 0.58 -0.8
312,050 + PGA1_c03260 0.58 +0.3
312,056 - PGA1_c03260 0.58 -1.8
312,058 - PGA1_c03260 0.59 +0.3
312,121 + PGA1_c03260 0.66 -0.6
312,162 + PGA1_c03260 0.71 +1.2
312,187 + PGA1_c03260 0.74 -1.7
312,207 - PGA1_c03260 0.77 +1.8
312,226 - PGA1_c03260 0.79 -1.2
312,236 + PGA1_c03260 0.80 +0.5
312,265 + PGA1_c03260 0.84 -0.4
312,292 - PGA1_c03260 0.87 -0.2
312,345 - -0.8
312,345 - -1.2
312,364 + +0.2
312,442 + +0.6
312,536 + PGA1_c03270 0.12 +1.0
312,618 - PGA1_c03270 0.18 +0.7
312,692 + PGA1_c03270 0.24 -0.3
312,747 + PGA1_c03270 0.28 +0.3
312,755 - PGA1_c03270 0.29 -0.5
312,874 + PGA1_c03270 0.38 +1.8
312,887 - PGA1_c03270 0.39 +1.1
312,893 - PGA1_c03270 0.40 +1.7
312,971 + PGA1_c03270 0.46 +0.5
313,011 + PGA1_c03270 0.49 +1.1
313,069 - PGA1_c03270 0.54 +0.7
313,069 - PGA1_c03270 0.54 +1.0
313,137 + PGA1_c03270 0.59 +1.4
313,137 - PGA1_c03270 0.59 -1.7
313,150 - PGA1_c03270 0.60 +1.5
313,150 - PGA1_c03270 0.60 +1.3
313,202 + PGA1_c03270 0.65 +1.4
313,350 + PGA1_c03270 0.76 -0.6
313,402 + PGA1_c03270 0.80 +0.8
313,534 - +0.3
313,534 - -1.3
313,534 - -2.9
313,560 + -2.0
313,610 - +1.8
313,641 + -1.8
313,669 - +0.6
313,699 - -1.0
313,699 - +0.4
313,699 - -2.0
313,699 - -0.2
313,802 - PGA1_c03280 0.14 +0.5
313,847 + PGA1_c03280 0.19 +1.7
313,855 - PGA1_c03280 0.19 +0.8
314,042 - PGA1_c03280 0.38 -0.6
314,042 - PGA1_c03280 0.38 -0.2
314,044 + PGA1_c03280 0.38 +0.8
314,109 - PGA1_c03280 0.44 -1.1
314,121 + PGA1_c03280 0.46 -1.2
314,215 + PGA1_c03280 0.55 -0.5
314,299 - PGA1_c03280 0.63 +0.8
314,342 - PGA1_c03280 0.67 -2.4
314,380 + PGA1_c03280 0.71 -0.4
314,419 - PGA1_c03280 0.75 -1.0
314,426 + PGA1_c03280 0.76 -1.0
314,434 - PGA1_c03280 0.76 -2.0
314,451 - PGA1_c03280 0.78 -0.4
314,504 + PGA1_c03280 0.83 +0.0
314,613 + -1.9

Or see this region's nucleotide sequence