Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c31890

Experiment: m.b. D-Cycloserine 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. D-Cycloserine 0.0625 mg/ml
3,342,401	+		PGA1_c31880	0.58	+0.7
3,342,430	+		PGA1_c31880	0.59	+1.7
3,342,430	+		PGA1_c31880	0.59	+1.5
3,342,430	+		PGA1_c31880	0.59	+1.8
3,342,430	+		PGA1_c31880	0.59	-1.2
3,342,430	+		PGA1_c31880	0.59	+0.7
3,342,430	+		PGA1_c31880	0.59	+0.8
3,342,430	+		PGA1_c31880	0.59	+1.6
3,342,430	+		PGA1_c31880	0.59	+1.4
3,342,430	+		PGA1_c31880	0.59	-2.2
3,342,438	+		PGA1_c31880	0.60	+0.5
3,342,438	-		PGA1_c31880	0.60	+0.9
3,342,438	-		PGA1_c31880	0.60	+1.3
3,342,506	+		PGA1_c31880	0.63	+1.4
3,342,513	+		PGA1_c31880	0.63	+0.4
3,342,513	+		PGA1_c31880	0.63	+1.1
3,342,521	-		PGA1_c31880	0.63	-0.8
3,342,521	-		PGA1_c31880	0.63	+1.7
3,342,535	+		PGA1_c31880	0.64	-0.2
3,342,570	+		PGA1_c31880	0.66	+0.7
3,342,570	+		PGA1_c31880	0.66	+1.1
3,342,570	+		PGA1_c31880	0.66	+0.2
3,342,570	+		PGA1_c31880	0.66	-0.8
3,342,578	-		PGA1_c31880	0.66	-0.2
3,342,578	-		PGA1_c31880	0.66	+2.1
3,342,605	+		PGA1_c31880	0.67	+3.0
3,342,605	+		PGA1_c31880	0.67	+1.0
3,342,615	+		PGA1_c31880	0.67	+0.7
3,342,615	+		PGA1_c31880	0.67	+1.8
3,342,615	+		PGA1_c31880	0.67	+2.3
3,342,623	-		PGA1_c31880	0.68	+2.6
3,342,623	-		PGA1_c31880	0.68	+1.8
3,342,623	-		PGA1_c31880	0.68	-0.3
3,342,719	+		PGA1_c31880	0.72	+0.3
3,342,727	-		PGA1_c31880	0.72	+1.8
3,342,783	-		PGA1_c31880	0.75	+1.2
3,342,808	+		PGA1_c31880	0.76	+2.6
3,342,810	+		PGA1_c31880	0.76	+1.6
3,342,816	-		PGA1_c31880	0.76	+0.8
3,342,820	+		PGA1_c31880	0.76	+3.5
3,342,820	+		PGA1_c31880	0.76	+0.2
3,342,840	+		PGA1_c31880	0.77	-2.3
3,342,845	+		PGA1_c31880	0.78	-1.8
3,342,848	-		PGA1_c31880	0.78	+2.1
3,342,853	-		PGA1_c31880	0.78	+3.1
3,342,858	-		PGA1_c31880	0.78	+0.8
3,342,875	-		PGA1_c31880	0.79	+0.3
3,342,876	-		PGA1_c31880	0.79	+2.2
3,342,877	+		PGA1_c31880	0.79	+2.1
3,342,877	+		PGA1_c31880	0.79	+1.2
3,342,887	+		PGA1_c31880	0.79	+0.2
3,342,921	+		PGA1_c31880	0.81	+3.1
3,342,927	+		PGA1_c31880	0.81	-0.9
3,342,930	+		PGA1_c31880	0.81	+2.1
3,342,935	-		PGA1_c31880	0.81	+1.5
3,342,935	-		PGA1_c31880	0.81	+2.7
3,342,967	+		PGA1_c31880	0.83	+2.5
3,343,007	+		PGA1_c31880	0.85	+1.0
3,343,007	+		PGA1_c31880	0.85	+0.8
3,343,015	-		PGA1_c31880	0.85	+2.7
3,343,022	-		PGA1_c31880	0.85	+2.4
3,343,041	+		PGA1_c31880	0.86	+0.8
3,343,049	-		PGA1_c31880	0.86	-1.2
3,343,057	+		PGA1_c31880	0.87	+1.4
3,343,069	+		PGA1_c31880	0.87	+2.0
3,343,079	+		PGA1_c31880	0.88	+2.7
3,343,079	+		PGA1_c31880	0.88	+2.4
3,343,201	-				-2.1
3,343,252	+				-0.8
3,343,260	-				+1.6
3,343,314	-				+1.7
3,343,385	+				+0.4
3,343,400	+				+1.5
3,343,408	-				+0.5
3,343,449	-				+2.1
3,343,464	-				-0.6
3,343,472	+		PGA1_c31890	0.11	+1.3
3,343,480	-		PGA1_c31890	0.12	+0.3
3,343,544	+		PGA1_c31890	0.20	-0.6
3,343,650	+		PGA1_c31890	0.34	+0.1
3,343,677	+		PGA1_c31890	0.38	+1.2
3,343,677	+		PGA1_c31890	0.38	-0.1
3,343,677	+		PGA1_c31890	0.38	+0.0
3,343,685	-		PGA1_c31890	0.39	+0.5
3,343,732	-		PGA1_c31890	0.45	-0.0
3,343,734	+		PGA1_c31890	0.45	+0.8
3,343,734	+		PGA1_c31890	0.45	-0.0
3,343,734	+		PGA1_c31890	0.45	-0.3
3,343,734	+		PGA1_c31890	0.45	-2.2
3,343,734	+		PGA1_c31890	0.45	+0.8
3,343,734	+		PGA1_c31890	0.45	-0.8
3,343,734	+		PGA1_c31890	0.45	+3.8
3,343,742	-		PGA1_c31890	0.46	+0.0
3,343,742	-		PGA1_c31890	0.46	-0.2
3,343,742	-		PGA1_c31890	0.46	+0.1
3,343,742	-		PGA1_c31890	0.46	+0.0
3,343,742	-		PGA1_c31890	0.46	+0.6
3,343,742	-		PGA1_c31890	0.46	+1.9
3,343,742	-		PGA1_c31890	0.46	-0.9
3,343,768	+		PGA1_c31890	0.50	-1.2
3,343,771	+		PGA1_c31890	0.50	-1.0
3,343,781	+		PGA1_c31890	0.51	-0.3
3,343,784	-		PGA1_c31890	0.52	-0.5
3,343,792	+		PGA1_c31890	0.53	-0.2
3,343,810	-		PGA1_c31890	0.55	-1.5
3,343,812	+		PGA1_c31890	0.55	-0.5
3,343,861	-		PGA1_c31890	0.62	+3.3
3,343,898	+		PGA1_c31890	0.67	+0.3
3,343,913	+		PGA1_c31890	0.69	-1.9
3,343,913	+		PGA1_c31890	0.69	-0.1
3,343,921	-		PGA1_c31890	0.70	+0.1
3,343,939	-		PGA1_c31890	0.72	-0.2
3,343,970	-		PGA1_c31890	0.76	-1.5
3,344,050	-		PGA1_c31890	0.87	-2.0
3,344,083	-				-0.3
3,344,083	-				+1.1
3,344,093	-				-0.2
3,344,171	-				+1.3
3,344,179	+				+2.0
3,344,192	-				+2.0
3,344,192	-				-0.4
3,344,243	+				+0.8
3,344,243	+				-0.4
3,344,258	-				-1.0
3,344,512	-		PGA1_c31900	0.16	-1.5
3,344,531	-		PGA1_c31900	0.17	-0.0
3,344,550	-		PGA1_c31900	0.18	-0.6
3,344,550	-		PGA1_c31900	0.18	-1.0
3,344,620	+		PGA1_c31900	0.21	-0.5
3,344,628	-		PGA1_c31900	0.21	-1.2
3,344,644	-		PGA1_c31900	0.22	-0.6
3,344,684	+		PGA1_c31900	0.24	+0.8
3,344,694	+		PGA1_c31900	0.24	+0.2
3,344,697	-		PGA1_c31900	0.25	-0.4
3,344,723	+		PGA1_c31900	0.26	+0.8
3,344,731	-		PGA1_c31900	0.26	-0.6
3,344,811	-		PGA1_c31900	0.30	-0.8
3,344,872	+		PGA1_c31900	0.33	+1.1
3,344,880	-		PGA1_c31900	0.33	+0.4
3,344,939	-		PGA1_c31900	0.36	+0.5
3,344,939	-		PGA1_c31900	0.36	-1.1
3,344,962	+		PGA1_c31900	0.37	-1.5
3,344,962	-		PGA1_c31900	0.37	+1.6
3,345,045	+		PGA1_c31900	0.41	-1.0
3,345,053	-		PGA1_c31900	0.41	-0.6
3,345,053	-		PGA1_c31900	0.41	+0.6
3,345,061	+		PGA1_c31900	0.42	+0.2
3,345,063	+		PGA1_c31900	0.42	-0.2
3,345,069	-		PGA1_c31900	0.42	+0.2
3,345,069	-		PGA1_c31900	0.42	+0.4
3,345,069	-		PGA1_c31900	0.42	-2.0
3,345,071	-		PGA1_c31900	0.42	+1.1
3,345,101	-		PGA1_c31900	0.44	+0.4
3,345,145	-		PGA1_c31900	0.46	-0.0
3,345,145	-		PGA1_c31900	0.46	-0.8