Experiment: m.b. perchlorate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2969 and HP15_2970 are separated by 85 nucleotides HP15_2970 and HP15_2971 overlap by 4 nucleotides HP15_2971 and HP15_2972 are separated by 215 nucleotides HP15_2972 and HP15_2973 are separated by 98 nucleotides
HP15_2969: HP15_2969 - transcriptional regulator, MerR family, at 3,113,998 to 3,114,501
_2969
HP15_2970: HP15_2970 - cation efflux protein, at 3,114,587 to 3,115,240
_2970
HP15_2971: HP15_2971 - auxin efflux carrier, at 3,115,237 to 3,116,154
_2971
HP15_2972: HP15_2972 - cyclic nucleotide-binding protein, at 3,116,370 to 3,117,029
_2972
HP15_2973: HP15_2973 - flavoprotein wrbA, at 3,117,128 to 3,117,727
_2973
Position (kb)
3115
3116
3117 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3114.276 kb on - strand, within HP15_2969 at 3114.280 kb on + strand, within HP15_2969 at 3114.392 kb on - strand, within HP15_2969 at 3114.479 kb on + strand at 3114.490 kb on + strand at 3114.490 kb on + strand at 3114.498 kb on - strand at 3114.613 kb on + strand at 3114.644 kb on + strand at 3114.645 kb on - strand at 3114.652 kb on - strand at 3114.663 kb on + strand, within HP15_2970 at 3114.663 kb on + strand, within HP15_2970 at 3114.663 kb on + strand, within HP15_2970 at 3114.663 kb on + strand, within HP15_2970 at 3114.765 kb on + strand, within HP15_2970 at 3114.826 kb on + strand, within HP15_2970 at 3114.833 kb on + strand, within HP15_2970 at 3114.834 kb on - strand, within HP15_2970 at 3114.834 kb on - strand, within HP15_2970 at 3114.862 kb on + strand, within HP15_2970 at 3114.863 kb on - strand, within HP15_2970 at 3114.868 kb on + strand, within HP15_2970 at 3114.882 kb on + strand, within HP15_2970 at 3114.962 kb on - strand, within HP15_2970 at 3115.013 kb on + strand, within HP15_2970 at 3115.078 kb on + strand, within HP15_2970 at 3115.184 kb on + strand at 3115.192 kb on - strand at 3115.294 kb on - strand at 3115.333 kb on - strand, within HP15_2971 at 3115.335 kb on - strand, within HP15_2971 at 3115.355 kb on - strand, within HP15_2971 at 3115.406 kb on + strand, within HP15_2971 at 3115.406 kb on + strand, within HP15_2971 at 3115.425 kb on - strand, within HP15_2971 at 3115.447 kb on - strand, within HP15_2971 at 3115.463 kb on + strand, within HP15_2971 at 3115.466 kb on - strand, within HP15_2971 at 3115.570 kb on + strand, within HP15_2971 at 3115.660 kb on + strand, within HP15_2971 at 3115.668 kb on - strand, within HP15_2971 at 3115.721 kb on + strand, within HP15_2971 at 3115.758 kb on + strand, within HP15_2971 at 3115.766 kb on - strand, within HP15_2971 at 3115.821 kb on - strand, within HP15_2971 at 3115.864 kb on - strand, within HP15_2971 at 3115.960 kb on + strand, within HP15_2971 at 3116.060 kb on + strand, within HP15_2971 at 3116.160 kb on - strand at 3116.173 kb on + strand at 3116.291 kb on + strand at 3116.352 kb on - strand at 3116.403 kb on - strand at 3116.578 kb on + strand, within HP15_2972 at 3116.802 kb on + strand, within HP15_2972 at 3116.936 kb on + strand, within HP15_2972 at 3116.977 kb on + strand at 3117.022 kb on + strand at 3117.042 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM remove 3,114,276 - HP15_2969 0.55 +0.6 3,114,280 + HP15_2969 0.56 -0.1 3,114,392 - HP15_2969 0.78 +0.4 3,114,479 + +0.4 3,114,490 + -0.1 3,114,490 + +0.3 3,114,498 - +0.3 3,114,613 + -0.5 3,114,644 + +0.2 3,114,645 - -0.7 3,114,652 - +0.1 3,114,663 + HP15_2970 0.12 +0.1 3,114,663 + HP15_2970 0.12 +1.3 3,114,663 + HP15_2970 0.12 +0.3 3,114,663 + HP15_2970 0.12 +0.5 3,114,765 + HP15_2970 0.27 +0.4 3,114,826 + HP15_2970 0.37 -2.6 3,114,833 + HP15_2970 0.38 -0.2 3,114,834 - HP15_2970 0.38 +0.5 3,114,834 - HP15_2970 0.38 -0.1 3,114,862 + HP15_2970 0.42 -0.6 3,114,863 - HP15_2970 0.42 +0.1 3,114,868 + HP15_2970 0.43 -1.1 3,114,882 + HP15_2970 0.45 +0.8 3,114,962 - HP15_2970 0.57 +2.1 3,115,013 + HP15_2970 0.65 -0.5 3,115,078 + HP15_2970 0.75 -1.2 3,115,184 + +1.0 3,115,192 - -0.1 3,115,294 - -0.1 3,115,333 - HP15_2971 0.10 -1.5 3,115,335 - HP15_2971 0.11 +0.0 3,115,355 - HP15_2971 0.13 -0.2 3,115,406 + HP15_2971 0.18 -0.5 3,115,406 + HP15_2971 0.18 -0.3 3,115,425 - HP15_2971 0.20 -0.6 3,115,447 - HP15_2971 0.23 -0.8 3,115,463 + HP15_2971 0.25 -1.5 3,115,466 - HP15_2971 0.25 +0.3 3,115,570 + HP15_2971 0.36 -0.3 3,115,660 + HP15_2971 0.46 -0.9 3,115,668 - HP15_2971 0.47 -0.7 3,115,721 + HP15_2971 0.53 +0.6 3,115,758 + HP15_2971 0.57 -0.0 3,115,766 - HP15_2971 0.58 -0.2 3,115,821 - HP15_2971 0.64 -0.8 3,115,864 - HP15_2971 0.68 +0.0 3,115,960 + HP15_2971 0.79 -0.9 3,116,060 + HP15_2971 0.90 -0.9 3,116,160 - +0.2 3,116,173 + -0.0 3,116,291 + +0.9 3,116,352 - +0.3 3,116,403 - -3.5 3,116,578 + HP15_2972 0.32 -1.6 3,116,802 + HP15_2972 0.65 +0.9 3,116,936 + HP15_2972 0.86 +0.3 3,116,977 + -0.3 3,117,022 + -0.3 3,117,042 + +1.1
Or see this region's nucleotide sequence