Experiment: m.b. D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02760 and PGA1_c02770 are separated by 119 nucleotides PGA1_c02770 and PGA1_c02780 overlap by 4 nucleotides
PGA1_c02760: PGA1_c02760 - putative methylated-DNA--protein-cysteine methyltransferase, at 264,448 to 265,518
_c02760
PGA1_c02770: PGA1_c02770 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase GpmI, at 265,638 to 267,158
_c02770
PGA1_c02780: PGA1_c02780 - Membrane-bound metallopeptidase, at 267,155 to 268,339
_c02780
Position (kb) 265
266
267
268 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 264.647 kb on + strand, within PGA1_c02760 at 264.655 kb on - strand, within PGA1_c02760 at 264.656 kb on - strand, within PGA1_c02760 at 264.741 kb on - strand, within PGA1_c02760 at 264.748 kb on - strand, within PGA1_c02760 at 264.770 kb on + strand, within PGA1_c02760 at 264.770 kb on + strand, within PGA1_c02760 at 264.795 kb on - strand, within PGA1_c02760 at 264.805 kb on - strand, within PGA1_c02760 at 264.833 kb on + strand, within PGA1_c02760 at 264.859 kb on + strand, within PGA1_c02760 at 264.877 kb on + strand, within PGA1_c02760 at 264.921 kb on - strand, within PGA1_c02760 at 264.943 kb on + strand, within PGA1_c02760 at 264.951 kb on - strand, within PGA1_c02760 at 265.057 kb on + strand, within PGA1_c02760 at 265.065 kb on - strand, within PGA1_c02760 at 265.068 kb on + strand, within PGA1_c02760 at 265.090 kb on + strand, within PGA1_c02760 at 265.098 kb on - strand, within PGA1_c02760 at 265.156 kb on - strand, within PGA1_c02760 at 265.170 kb on + strand, within PGA1_c02760 at 265.178 kb on - strand, within PGA1_c02760 at 265.215 kb on + strand, within PGA1_c02760 at 265.215 kb on + strand, within PGA1_c02760 at 265.225 kb on + strand, within PGA1_c02760 at 265.225 kb on + strand, within PGA1_c02760 at 265.233 kb on - strand, within PGA1_c02760 at 265.233 kb on - strand, within PGA1_c02760 at 265.233 kb on - strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.268 kb on - strand, within PGA1_c02760 at 265.268 kb on - strand, within PGA1_c02760 at 265.268 kb on - strand, within PGA1_c02760 at 265.268 kb on - strand, within PGA1_c02760 at 265.268 kb on - strand, within PGA1_c02760 at 265.268 kb on - strand, within PGA1_c02760 at 265.268 kb on - strand, within PGA1_c02760 at 265.307 kb on + strand, within PGA1_c02760 at 265.325 kb on + strand, within PGA1_c02760 at 265.393 kb on - strand, within PGA1_c02760 at 265.400 kb on + strand, within PGA1_c02760 at 265.400 kb on + strand, within PGA1_c02760 at 265.400 kb on + strand, within PGA1_c02760 at 265.408 kb on - strand, within PGA1_c02760 at 265.408 kb on - strand, within PGA1_c02760 at 265.408 kb on - strand, within PGA1_c02760 at 265.408 kb on - strand, within PGA1_c02760 at 265.408 kb on - strand, within PGA1_c02760 at 265.423 kb on - strand at 265.520 kb on - strand at 265.520 kb on - strand at 265.547 kb on + strand at 265.557 kb on + strand at 265.557 kb on + strand at 265.565 kb on - strand at 267.157 kb on - strand at 267.160 kb on - strand at 267.200 kb on + strand at 267.208 kb on + strand at 267.216 kb on - strand at 267.221 kb on + strand at 267.257 kb on - strand at 267.258 kb on + strand at 267.331 kb on + strand, within PGA1_c02780 at 267.331 kb on + strand, within PGA1_c02780 at 267.331 kb on + strand, within PGA1_c02780 at 267.339 kb on - strand, within PGA1_c02780 at 267.354 kb on - strand, within PGA1_c02780 at 267.413 kb on + strand, within PGA1_c02780 at 267.413 kb on + strand, within PGA1_c02780 at 267.421 kb on - strand, within PGA1_c02780 at 267.421 kb on - strand, within PGA1_c02780 at 267.421 kb on - strand, within PGA1_c02780 at 267.564 kb on - strand, within PGA1_c02780 at 267.564 kb on - strand, within PGA1_c02780 at 267.646 kb on + strand, within PGA1_c02780 at 267.689 kb on - strand, within PGA1_c02780 at 267.706 kb on - strand, within PGA1_c02780 at 267.706 kb on - strand, within PGA1_c02780 at 267.706 kb on - strand, within PGA1_c02780 at 267.708 kb on + strand, within PGA1_c02780 at 267.708 kb on + strand, within PGA1_c02780 at 267.723 kb on + strand, within PGA1_c02780 at 267.723 kb on + strand, within PGA1_c02780 at 267.723 kb on + strand, within PGA1_c02780 at 267.723 kb on + strand, within PGA1_c02780 at 267.723 kb on + strand, within PGA1_c02780 at 267.731 kb on - strand, within PGA1_c02780 at 267.731 kb on - strand, within PGA1_c02780 at 267.795 kb on + strand, within PGA1_c02780 at 267.795 kb on + strand, within PGA1_c02780 at 267.855 kb on - strand, within PGA1_c02780 at 267.929 kb on + strand, within PGA1_c02780 at 267.930 kb on + strand, within PGA1_c02780 at 267.934 kb on + strand, within PGA1_c02780 at 267.938 kb on - strand, within PGA1_c02780 at 268.019 kb on - strand, within PGA1_c02780 at 268.127 kb on + strand, within PGA1_c02780 at 268.135 kb on + strand, within PGA1_c02780 at 268.135 kb on + strand, within PGA1_c02780 at 268.156 kb on - strand, within PGA1_c02780
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml remove 264,647 + PGA1_c02760 0.19 +1.3 264,655 - PGA1_c02760 0.19 -0.1 264,656 - PGA1_c02760 0.19 +0.8 264,741 - PGA1_c02760 0.27 +0.6 264,748 - PGA1_c02760 0.28 -0.1 264,770 + PGA1_c02760 0.30 +0.1 264,770 + PGA1_c02760 0.30 +0.8 264,795 - PGA1_c02760 0.32 -2.5 264,805 - PGA1_c02760 0.33 +2.0 264,833 + PGA1_c02760 0.36 +1.2 264,859 + PGA1_c02760 0.38 +0.2 264,877 + PGA1_c02760 0.40 -0.2 264,921 - PGA1_c02760 0.44 -2.0 264,943 + PGA1_c02760 0.46 -2.1 264,951 - PGA1_c02760 0.47 +0.3 265,057 + PGA1_c02760 0.57 +0.6 265,065 - PGA1_c02760 0.58 -1.8 265,068 + PGA1_c02760 0.58 -2.8 265,090 + PGA1_c02760 0.60 -0.5 265,098 - PGA1_c02760 0.61 -2.0 265,156 - PGA1_c02760 0.66 +1.7 265,170 + PGA1_c02760 0.67 -0.3 265,178 - PGA1_c02760 0.68 +0.7 265,215 + PGA1_c02760 0.72 +0.1 265,215 + PGA1_c02760 0.72 -3.0 265,225 + PGA1_c02760 0.73 -0.7 265,225 + PGA1_c02760 0.73 +0.2 265,233 - PGA1_c02760 0.73 -2.2 265,233 - PGA1_c02760 0.73 +0.2 265,233 - PGA1_c02760 0.73 -0.9 265,260 + PGA1_c02760 0.76 -1.1 265,260 + PGA1_c02760 0.76 +0.7 265,260 + PGA1_c02760 0.76 -0.1 265,260 + PGA1_c02760 0.76 -0.2 265,260 + PGA1_c02760 0.76 +1.1 265,260 + PGA1_c02760 0.76 +0.6 265,260 + PGA1_c02760 0.76 -0.2 265,260 + PGA1_c02760 0.76 +0.4 265,260 + PGA1_c02760 0.76 +3.1 265,260 + PGA1_c02760 0.76 +0.8 265,260 + PGA1_c02760 0.76 -1.2 265,260 + PGA1_c02760 0.76 +1.0 265,260 + PGA1_c02760 0.76 +0.3 265,260 + PGA1_c02760 0.76 +1.0 265,260 + PGA1_c02760 0.76 -0.2 265,268 - PGA1_c02760 0.77 +0.6 265,268 - PGA1_c02760 0.77 +0.5 265,268 - PGA1_c02760 0.77 +0.2 265,268 - PGA1_c02760 0.77 -0.7 265,268 - PGA1_c02760 0.77 +1.2 265,268 - PGA1_c02760 0.77 -0.5 265,268 - PGA1_c02760 0.77 +0.1 265,307 + PGA1_c02760 0.80 +0.1 265,325 + PGA1_c02760 0.82 -0.8 265,393 - PGA1_c02760 0.88 +0.5 265,400 + PGA1_c02760 0.89 +0.6 265,400 + PGA1_c02760 0.89 +2.1 265,400 + PGA1_c02760 0.89 +1.9 265,408 - PGA1_c02760 0.90 -0.3 265,408 - PGA1_c02760 0.90 -0.8 265,408 - PGA1_c02760 0.90 -0.6 265,408 - PGA1_c02760 0.90 +0.1 265,408 - PGA1_c02760 0.90 -0.8 265,423 - -0.3 265,520 - -0.2 265,520 - +0.8 265,547 + -0.3 265,557 + -0.2 265,557 + -1.0 265,565 - -0.8 267,157 - +0.0 267,160 - -1.5 267,200 + -0.2 267,208 + +0.1 267,216 - -1.9 267,221 + -0.4 267,257 - -1.3 267,258 + -0.3 267,331 + PGA1_c02780 0.15 -0.9 267,331 + PGA1_c02780 0.15 -1.2 267,331 + PGA1_c02780 0.15 -0.4 267,339 - PGA1_c02780 0.16 -3.3 267,354 - PGA1_c02780 0.17 -0.7 267,413 + PGA1_c02780 0.22 +0.3 267,413 + PGA1_c02780 0.22 +0.2 267,421 - PGA1_c02780 0.22 -2.0 267,421 - PGA1_c02780 0.22 +0.0 267,421 - PGA1_c02780 0.22 +0.2 267,564 - PGA1_c02780 0.35 -0.4 267,564 - PGA1_c02780 0.35 -1.8 267,646 + PGA1_c02780 0.41 +0.0 267,689 - PGA1_c02780 0.45 +1.0 267,706 - PGA1_c02780 0.46 -0.4 267,706 - PGA1_c02780 0.46 +0.5 267,706 - PGA1_c02780 0.46 +1.1 267,708 + PGA1_c02780 0.47 -1.2 267,708 + PGA1_c02780 0.47 -3.0 267,723 + PGA1_c02780 0.48 -0.0 267,723 + PGA1_c02780 0.48 +0.2 267,723 + PGA1_c02780 0.48 -2.1 267,723 + PGA1_c02780 0.48 +0.4 267,723 + PGA1_c02780 0.48 -1.6 267,731 - PGA1_c02780 0.49 -0.1 267,731 - PGA1_c02780 0.49 -2.2 267,795 + PGA1_c02780 0.54 +0.1 267,795 + PGA1_c02780 0.54 +0.3 267,855 - PGA1_c02780 0.59 +0.1 267,929 + PGA1_c02780 0.65 -1.5 267,930 + PGA1_c02780 0.65 -0.6 267,934 + PGA1_c02780 0.66 -1.2 267,938 - PGA1_c02780 0.66 -0.8 268,019 - PGA1_c02780 0.73 -0.4 268,127 + PGA1_c02780 0.82 +0.2 268,135 + PGA1_c02780 0.83 +0.4 268,135 + PGA1_c02780 0.83 -3.2 268,156 - PGA1_c02780 0.84 -0.8
Or see this region's nucleotide sequence