Experiment: m.b. D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02740 and PGA1_c02750 overlap by 4 nucleotides PGA1_c02750 and PGA1_c02760 are separated by 102 nucleotides
PGA1_c02740: PGA1_c02740 - sn-glycerol-3-phosphate import ATP-binding protein UgbC, at 262,301 to 263,347
_c02740
PGA1_c02750: PGA1_c02750 - Metal-dependent hydrolase, at 263,344 to 264,345
_c02750
PGA1_c02760: PGA1_c02760 - putative methylated-DNA--protein-cysteine methyltransferase, at 264,448 to 265,518
_c02760
Position (kb) 263
264
265 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 262.347 kb on + strand at 262.348 kb on + strand at 262.377 kb on + strand at 262.377 kb on + strand at 262.385 kb on - strand at 262.455 kb on + strand, within PGA1_c02740 at 262.455 kb on + strand, within PGA1_c02740 at 262.463 kb on - strand, within PGA1_c02740 at 262.501 kb on + strand, within PGA1_c02740 at 262.617 kb on - strand, within PGA1_c02740 at 262.643 kb on - strand, within PGA1_c02740 at 262.721 kb on - strand, within PGA1_c02740 at 262.740 kb on + strand, within PGA1_c02740 at 262.799 kb on + strand, within PGA1_c02740 at 262.828 kb on + strand, within PGA1_c02740 at 262.833 kb on + strand, within PGA1_c02740 at 262.838 kb on + strand, within PGA1_c02740 at 262.848 kb on + strand, within PGA1_c02740 at 262.849 kb on + strand, within PGA1_c02740 at 262.883 kb on - strand, within PGA1_c02740 at 262.945 kb on + strand, within PGA1_c02740 at 262.945 kb on + strand, within PGA1_c02740 at 262.953 kb on - strand, within PGA1_c02740 at 263.007 kb on - strand, within PGA1_c02740 at 263.109 kb on + strand, within PGA1_c02740 at 263.172 kb on + strand, within PGA1_c02740 at 263.228 kb on + strand, within PGA1_c02740 at 263.228 kb on + strand, within PGA1_c02740 at 263.228 kb on + strand, within PGA1_c02740 at 263.241 kb on + strand, within PGA1_c02740 at 263.241 kb on + strand, within PGA1_c02740 at 263.273 kb on + strand at 263.361 kb on - strand at 263.371 kb on - strand at 263.384 kb on + strand at 263.397 kb on + strand at 263.402 kb on + strand at 263.405 kb on - strand at 263.405 kb on - strand at 263.405 kb on - strand at 263.405 kb on - strand at 263.405 kb on - strand at 263.405 kb on - strand at 263.407 kb on + strand at 263.523 kb on + strand, within PGA1_c02750 at 263.547 kb on + strand, within PGA1_c02750 at 263.556 kb on + strand, within PGA1_c02750 at 263.604 kb on + strand, within PGA1_c02750 at 263.635 kb on + strand, within PGA1_c02750 at 263.635 kb on + strand, within PGA1_c02750 at 263.643 kb on - strand, within PGA1_c02750 at 263.643 kb on - strand, within PGA1_c02750 at 263.648 kb on + strand, within PGA1_c02750 at 263.649 kb on - strand, within PGA1_c02750 at 263.668 kb on + strand, within PGA1_c02750 at 263.726 kb on - strand, within PGA1_c02750 at 263.731 kb on - strand, within PGA1_c02750 at 263.810 kb on + strand, within PGA1_c02750 at 263.810 kb on + strand, within PGA1_c02750 at 263.818 kb on - strand, within PGA1_c02750 at 263.823 kb on - strand, within PGA1_c02750 at 263.823 kb on - strand, within PGA1_c02750 at 263.823 kb on - strand, within PGA1_c02750 at 263.823 kb on - strand, within PGA1_c02750 at 263.950 kb on + strand, within PGA1_c02750 at 263.950 kb on + strand, within PGA1_c02750 at 263.958 kb on - strand, within PGA1_c02750 at 263.983 kb on + strand, within PGA1_c02750 at 263.991 kb on - strand, within PGA1_c02750 at 263.991 kb on - strand, within PGA1_c02750 at 264.039 kb on + strand, within PGA1_c02750 at 264.040 kb on + strand, within PGA1_c02750 at 264.044 kb on + strand, within PGA1_c02750 at 264.062 kb on - strand, within PGA1_c02750 at 264.062 kb on - strand, within PGA1_c02750 at 264.064 kb on + strand, within PGA1_c02750 at 264.120 kb on + strand, within PGA1_c02750 at 264.141 kb on + strand, within PGA1_c02750 at 264.142 kb on + strand, within PGA1_c02750 at 264.142 kb on + strand, within PGA1_c02750 at 264.143 kb on + strand, within PGA1_c02750 at 264.150 kb on - strand, within PGA1_c02750 at 264.150 kb on - strand, within PGA1_c02750 at 264.183 kb on + strand, within PGA1_c02750 at 264.190 kb on - strand, within PGA1_c02750 at 264.247 kb on - strand at 264.256 kb on + strand at 264.256 kb on + strand at 264.256 kb on + strand at 264.259 kb on - strand at 264.264 kb on - strand at 264.264 kb on - strand at 264.264 kb on - strand at 264.265 kb on + strand at 264.273 kb on + strand at 264.273 kb on - strand at 264.293 kb on + strand at 264.319 kb on + strand at 264.319 kb on + strand at 264.319 kb on + strand at 264.327 kb on - strand at 264.427 kb on + strand at 264.427 kb on + strand at 264.427 kb on + strand at 264.427 kb on + strand at 264.427 kb on + strand at 264.427 kb on + strand at 264.427 kb on + strand at 264.432 kb on + strand at 264.435 kb on - strand at 264.435 kb on - strand at 264.440 kb on - strand at 264.440 kb on - strand at 264.440 kb on - strand at 264.523 kb on + strand at 264.531 kb on - strand at 264.531 kb on - strand at 264.614 kb on + strand, within PGA1_c02760 at 264.622 kb on - strand, within PGA1_c02760 at 264.622 kb on - strand, within PGA1_c02760 at 264.647 kb on + strand, within PGA1_c02760 at 264.655 kb on - strand, within PGA1_c02760 at 264.656 kb on - strand, within PGA1_c02760 at 264.741 kb on - strand, within PGA1_c02760 at 264.748 kb on - strand, within PGA1_c02760 at 264.770 kb on + strand, within PGA1_c02760 at 264.770 kb on + strand, within PGA1_c02760 at 264.795 kb on - strand, within PGA1_c02760 at 264.805 kb on - strand, within PGA1_c02760 at 264.833 kb on + strand, within PGA1_c02760 at 264.859 kb on + strand, within PGA1_c02760 at 264.877 kb on + strand, within PGA1_c02760 at 264.921 kb on - strand, within PGA1_c02760 at 264.943 kb on + strand, within PGA1_c02760 at 264.951 kb on - strand, within PGA1_c02760 at 265.057 kb on + strand, within PGA1_c02760 at 265.065 kb on - strand, within PGA1_c02760 at 265.068 kb on + strand, within PGA1_c02760 at 265.090 kb on + strand, within PGA1_c02760 at 265.098 kb on - strand, within PGA1_c02760 at 265.156 kb on - strand, within PGA1_c02760 at 265.170 kb on + strand, within PGA1_c02760 at 265.178 kb on - strand, within PGA1_c02760 at 265.215 kb on + strand, within PGA1_c02760 at 265.215 kb on + strand, within PGA1_c02760 at 265.225 kb on + strand, within PGA1_c02760 at 265.225 kb on + strand, within PGA1_c02760 at 265.233 kb on - strand, within PGA1_c02760 at 265.233 kb on - strand, within PGA1_c02760 at 265.233 kb on - strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.268 kb on - strand, within PGA1_c02760 at 265.268 kb on - strand, within PGA1_c02760 at 265.268 kb on - strand, within PGA1_c02760 at 265.268 kb on - strand, within PGA1_c02760 at 265.268 kb on - strand, within PGA1_c02760 at 265.268 kb on - strand, within PGA1_c02760 at 265.268 kb on - strand, within PGA1_c02760 at 265.307 kb on + strand, within PGA1_c02760 at 265.325 kb on + strand, within PGA1_c02760
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml remove 262,347 + +0.7 262,348 + -0.0 262,377 + +2.1 262,377 + +0.4 262,385 - +0.6 262,455 + PGA1_c02740 0.15 +1.4 262,455 + PGA1_c02740 0.15 +0.3 262,463 - PGA1_c02740 0.15 -1.0 262,501 + PGA1_c02740 0.19 -1.2 262,617 - PGA1_c02740 0.30 +1.9 262,643 - PGA1_c02740 0.33 +1.2 262,721 - PGA1_c02740 0.40 +0.9 262,740 + PGA1_c02740 0.42 -0.8 262,799 + PGA1_c02740 0.48 -1.1 262,828 + PGA1_c02740 0.50 -0.8 262,833 + PGA1_c02740 0.51 +0.1 262,838 + PGA1_c02740 0.51 +2.1 262,848 + PGA1_c02740 0.52 -0.4 262,849 + PGA1_c02740 0.52 +1.0 262,883 - PGA1_c02740 0.56 +0.8 262,945 + PGA1_c02740 0.62 -1.2 262,945 + PGA1_c02740 0.62 +0.1 262,953 - PGA1_c02740 0.62 +0.6 263,007 - PGA1_c02740 0.67 -0.2 263,109 + PGA1_c02740 0.77 -0.7 263,172 + PGA1_c02740 0.83 -1.3 263,228 + PGA1_c02740 0.89 +0.8 263,228 + PGA1_c02740 0.89 +0.5 263,228 + PGA1_c02740 0.89 +0.2 263,241 + PGA1_c02740 0.90 +0.3 263,241 + PGA1_c02740 0.90 +0.4 263,273 + +1.0 263,361 - -0.9 263,371 - -0.1 263,384 + +0.6 263,397 + -1.5 263,402 + -0.5 263,405 - -2.3 263,405 - -0.1 263,405 - +1.0 263,405 - +0.1 263,405 - +1.1 263,405 - -0.9 263,407 + +1.2 263,523 + PGA1_c02750 0.18 -1.1 263,547 + PGA1_c02750 0.20 -0.0 263,556 + PGA1_c02750 0.21 -0.4 263,604 + PGA1_c02750 0.26 -3.6 263,635 + PGA1_c02750 0.29 -1.8 263,635 + PGA1_c02750 0.29 +0.2 263,643 - PGA1_c02750 0.30 +0.7 263,643 - PGA1_c02750 0.30 -0.9 263,648 + PGA1_c02750 0.30 +0.2 263,649 - PGA1_c02750 0.30 -0.3 263,668 + PGA1_c02750 0.32 +2.3 263,726 - PGA1_c02750 0.38 +0.2 263,731 - PGA1_c02750 0.39 +0.8 263,810 + PGA1_c02750 0.47 -2.0 263,810 + PGA1_c02750 0.47 -2.2 263,818 - PGA1_c02750 0.47 +2.0 263,823 - PGA1_c02750 0.48 -2.3 263,823 - PGA1_c02750 0.48 +1.6 263,823 - PGA1_c02750 0.48 -1.4 263,823 - PGA1_c02750 0.48 +1.0 263,950 + PGA1_c02750 0.60 -0.3 263,950 + PGA1_c02750 0.60 -0.5 263,958 - PGA1_c02750 0.61 -2.5 263,983 + PGA1_c02750 0.64 +0.5 263,991 - PGA1_c02750 0.65 +2.1 263,991 - PGA1_c02750 0.65 -0.8 264,039 + PGA1_c02750 0.69 +2.8 264,040 + PGA1_c02750 0.69 -2.8 264,044 + PGA1_c02750 0.70 +0.5 264,062 - PGA1_c02750 0.72 +0.1 264,062 - PGA1_c02750 0.72 -2.9 264,064 + PGA1_c02750 0.72 +0.8 264,120 + PGA1_c02750 0.77 -0.1 264,141 + PGA1_c02750 0.80 -1.3 264,142 + PGA1_c02750 0.80 -0.8 264,142 + PGA1_c02750 0.80 +1.4 264,143 + PGA1_c02750 0.80 -0.0 264,150 - PGA1_c02750 0.80 -0.6 264,150 - PGA1_c02750 0.80 +0.6 264,183 + PGA1_c02750 0.84 +0.3 264,190 - PGA1_c02750 0.84 -0.4 264,247 - -0.2 264,256 + +0.1 264,256 + +0.3 264,256 + +1.0 264,259 - +0.6 264,264 - -1.2 264,264 - +2.8 264,264 - +0.8 264,265 + +1.2 264,273 + +0.5 264,273 - +0.1 264,293 + -0.6 264,319 + +0.6 264,319 + +1.1 264,319 + -0.5 264,327 - -0.1 264,427 + -0.4 264,427 + +0.1 264,427 + -1.8 264,427 + +0.1 264,427 + +0.4 264,427 + -0.4 264,427 + +0.2 264,432 + -1.3 264,435 - +1.7 264,435 - -1.8 264,440 - -0.9 264,440 - -0.6 264,440 - +0.8 264,523 + -1.6 264,531 - +0.4 264,531 - -1.9 264,614 + PGA1_c02760 0.15 +1.3 264,622 - PGA1_c02760 0.16 +0.1 264,622 - PGA1_c02760 0.16 -0.1 264,647 + PGA1_c02760 0.19 +1.3 264,655 - PGA1_c02760 0.19 -0.1 264,656 - PGA1_c02760 0.19 +0.8 264,741 - PGA1_c02760 0.27 +0.6 264,748 - PGA1_c02760 0.28 -0.1 264,770 + PGA1_c02760 0.30 +0.1 264,770 + PGA1_c02760 0.30 +0.8 264,795 - PGA1_c02760 0.32 -2.5 264,805 - PGA1_c02760 0.33 +2.0 264,833 + PGA1_c02760 0.36 +1.2 264,859 + PGA1_c02760 0.38 +0.2 264,877 + PGA1_c02760 0.40 -0.2 264,921 - PGA1_c02760 0.44 -2.0 264,943 + PGA1_c02760 0.46 -2.1 264,951 - PGA1_c02760 0.47 +0.3 265,057 + PGA1_c02760 0.57 +0.6 265,065 - PGA1_c02760 0.58 -1.8 265,068 + PGA1_c02760 0.58 -2.8 265,090 + PGA1_c02760 0.60 -0.5 265,098 - PGA1_c02760 0.61 -2.0 265,156 - PGA1_c02760 0.66 +1.7 265,170 + PGA1_c02760 0.67 -0.3 265,178 - PGA1_c02760 0.68 +0.7 265,215 + PGA1_c02760 0.72 +0.1 265,215 + PGA1_c02760 0.72 -3.0 265,225 + PGA1_c02760 0.73 -0.7 265,225 + PGA1_c02760 0.73 +0.2 265,233 - PGA1_c02760 0.73 -2.2 265,233 - PGA1_c02760 0.73 +0.2 265,233 - PGA1_c02760 0.73 -0.9 265,260 + PGA1_c02760 0.76 -1.1 265,260 + PGA1_c02760 0.76 +0.7 265,260 + PGA1_c02760 0.76 -0.1 265,260 + PGA1_c02760 0.76 -0.2 265,260 + PGA1_c02760 0.76 +1.1 265,260 + PGA1_c02760 0.76 +0.6 265,260 + PGA1_c02760 0.76 -0.2 265,260 + PGA1_c02760 0.76 +0.4 265,260 + PGA1_c02760 0.76 +3.1 265,260 + PGA1_c02760 0.76 +0.8 265,260 + PGA1_c02760 0.76 -1.2 265,260 + PGA1_c02760 0.76 +1.0 265,260 + PGA1_c02760 0.76 +0.3 265,260 + PGA1_c02760 0.76 +1.0 265,260 + PGA1_c02760 0.76 -0.2 265,268 - PGA1_c02760 0.77 +0.6 265,268 - PGA1_c02760 0.77 +0.5 265,268 - PGA1_c02760 0.77 +0.2 265,268 - PGA1_c02760 0.77 -0.7 265,268 - PGA1_c02760 0.77 +1.2 265,268 - PGA1_c02760 0.77 -0.5 265,268 - PGA1_c02760 0.77 +0.1 265,307 + PGA1_c02760 0.80 +0.1 265,325 + PGA1_c02760 0.82 -0.8
Or see this region's nucleotide sequence