Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02730

Experiment: m.b. D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02710 and PGA1_c02720 are separated by 73 nucleotidesPGA1_c02720 and PGA1_c02730 are separated by 10 nucleotidesPGA1_c02730 and PGA1_c02740 are separated by 12 nucleotides PGA1_c02710: PGA1_c02710 - sn-glycerol-3-phosphate-binding periplasmic protein ugpB, at 259,140 to 260,441 _c02710 PGA1_c02720: PGA1_c02720 - sn-glycerol-3-phosphate transport system permease protein UgpA, at 260,515 to 261,396 _c02720 PGA1_c02730: PGA1_c02730 - sn-glycerol-3-phosphate transport system permease protein UgpE, at 261,407 to 262,288 _c02730 PGA1_c02740: PGA1_c02740 - sn-glycerol-3-phosphate import ATP-binding protein UgbC, at 262,301 to 263,347 _c02740 Position (kb) 261 262 263Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 260.408 kb on - strandat 260.422 kb on - strandat 260.450 kb on - strandat 260.477 kb on + strandat 260.493 kb on + strandat 260.493 kb on + strandat 260.513 kb on + strandat 260.548 kb on - strandat 260.634 kb on - strand, within PGA1_c02720at 260.635 kb on - strand, within PGA1_c02720at 260.664 kb on - strand, within PGA1_c02720at 260.664 kb on - strand, within PGA1_c02720at 260.671 kb on + strand, within PGA1_c02720at 260.671 kb on + strand, within PGA1_c02720at 260.671 kb on + strand, within PGA1_c02720at 260.679 kb on - strand, within PGA1_c02720at 260.680 kb on - strand, within PGA1_c02720at 260.702 kb on + strand, within PGA1_c02720at 260.732 kb on + strand, within PGA1_c02720at 260.740 kb on - strand, within PGA1_c02720at 260.763 kb on - strand, within PGA1_c02720at 260.806 kb on + strand, within PGA1_c02720at 260.807 kb on - strand, within PGA1_c02720at 260.834 kb on + strand, within PGA1_c02720at 260.836 kb on + strand, within PGA1_c02720at 260.836 kb on + strand, within PGA1_c02720at 260.844 kb on - strand, within PGA1_c02720at 260.847 kb on + strand, within PGA1_c02720at 260.847 kb on + strand, within PGA1_c02720at 260.847 kb on + strand, within PGA1_c02720at 260.847 kb on + strand, within PGA1_c02720at 260.992 kb on + strand, within PGA1_c02720at 261.055 kb on - strand, within PGA1_c02720at 261.117 kb on - strand, within PGA1_c02720at 261.151 kb on + strand, within PGA1_c02720at 261.179 kb on + strand, within PGA1_c02720at 261.179 kb on + strand, within PGA1_c02720at 261.215 kb on + strand, within PGA1_c02720at 261.219 kb on + strand, within PGA1_c02720at 261.220 kb on + strand, within PGA1_c02720at 261.277 kb on - strand, within PGA1_c02720at 261.292 kb on + strand, within PGA1_c02720at 261.325 kb on - strandat 261.385 kb on + strandat 261.393 kb on - strandat 261.407 kb on - strandat 261.411 kb on - strandat 261.504 kb on - strand, within PGA1_c02730at 261.514 kb on + strand, within PGA1_c02730at 261.531 kb on - strand, within PGA1_c02730at 261.548 kb on - strand, within PGA1_c02730at 261.572 kb on + strand, within PGA1_c02730at 261.575 kb on - strand, within PGA1_c02730at 261.582 kb on - strand, within PGA1_c02730at 261.582 kb on - strand, within PGA1_c02730at 261.596 kb on + strand, within PGA1_c02730at 261.627 kb on + strand, within PGA1_c02730at 261.634 kb on + strand, within PGA1_c02730at 261.657 kb on + strand, within PGA1_c02730at 261.657 kb on + strand, within PGA1_c02730at 261.657 kb on + strand, within PGA1_c02730at 261.657 kb on + strand, within PGA1_c02730at 261.657 kb on + strand, within PGA1_c02730at 261.665 kb on - strand, within PGA1_c02730at 261.665 kb on - strand, within PGA1_c02730at 261.667 kb on + strand, within PGA1_c02730at 261.670 kb on - strand, within PGA1_c02730at 261.693 kb on + strand, within PGA1_c02730at 261.701 kb on - strand, within PGA1_c02730at 261.739 kb on - strand, within PGA1_c02730at 261.807 kb on + strand, within PGA1_c02730at 261.829 kb on + strand, within PGA1_c02730at 261.839 kb on - strand, within PGA1_c02730at 261.867 kb on + strand, within PGA1_c02730at 261.955 kb on + strand, within PGA1_c02730at 261.963 kb on - strand, within PGA1_c02730at 261.963 kb on - strand, within PGA1_c02730at 262.021 kb on + strand, within PGA1_c02730at 262.029 kb on - strand, within PGA1_c02730at 262.029 kb on - strand, within PGA1_c02730at 262.029 kb on - strand, within PGA1_c02730at 262.096 kb on + strand, within PGA1_c02730at 262.130 kb on - strand, within PGA1_c02730at 262.134 kb on + strand, within PGA1_c02730at 262.155 kb on + strand, within PGA1_c02730at 262.155 kb on + strand, within PGA1_c02730at 262.156 kb on - strand, within PGA1_c02730at 262.163 kb on - strand, within PGA1_c02730at 262.163 kb on - strand, within PGA1_c02730at 262.163 kb on - strand, within PGA1_c02730at 262.216 kb on + strandat 262.222 kb on + strandat 262.332 kb on + strandat 262.341 kb on - strandat 262.347 kb on + strandat 262.348 kb on + strandat 262.377 kb on + strandat 262.377 kb on + strandat 262.385 kb on - strandat 262.455 kb on + strand, within PGA1_c02740at 262.455 kb on + strand, within PGA1_c02740at 262.463 kb on - strand, within PGA1_c02740at 262.501 kb on + strand, within PGA1_c02740at 262.617 kb on - strand, within PGA1_c02740at 262.643 kb on - strand, within PGA1_c02740at 262.721 kb on - strand, within PGA1_c02740at 262.740 kb on + strand, within PGA1_c02740at 262.799 kb on + strand, within PGA1_c02740at 262.828 kb on + strand, within PGA1_c02740at 262.833 kb on + strand, within PGA1_c02740at 262.838 kb on + strand, within PGA1_c02740at 262.848 kb on + strand, within PGA1_c02740at 262.849 kb on + strand, within PGA1_c02740at 262.883 kb on - strand, within PGA1_c02740at 262.945 kb on + strand, within PGA1_c02740at 262.945 kb on + strand, within PGA1_c02740at 262.953 kb on - strand, within PGA1_c02740at 263.007 kb on - strand, within PGA1_c02740at 263.109 kb on + strand, within PGA1_c02740at 263.172 kb on + strand, within PGA1_c02740at 263.228 kb on + strand, within PGA1_c02740at 263.228 kb on + strand, within PGA1_c02740at 263.228 kb on + strand, within PGA1_c02740at 263.241 kb on + strand, within PGA1_c02740at 263.241 kb on + strand, within PGA1_c02740at 263.273 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml
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260,408 - -0.1
260,422 - +0.6
260,450 - +1.7
260,477 + -0.1
260,493 + +1.8
260,493 + +1.2
260,513 + -1.0
260,548 - -3.0
260,634 - PGA1_c02720 0.13 -0.5
260,635 - PGA1_c02720 0.14 -0.6
260,664 - PGA1_c02720 0.17 +0.6
260,664 - PGA1_c02720 0.17 -0.8
260,671 + PGA1_c02720 0.18 +1.4
260,671 + PGA1_c02720 0.18 -1.9
260,671 + PGA1_c02720 0.18 +1.0
260,679 - PGA1_c02720 0.19 +0.3
260,680 - PGA1_c02720 0.19 +0.5
260,702 + PGA1_c02720 0.21 +0.8
260,732 + PGA1_c02720 0.25 +0.8
260,740 - PGA1_c02720 0.26 -0.0
260,763 - PGA1_c02720 0.28 -1.0
260,806 + PGA1_c02720 0.33 -1.1
260,807 - PGA1_c02720 0.33 -2.8
260,834 + PGA1_c02720 0.36 -1.2
260,836 + PGA1_c02720 0.36 -1.8
260,836 + PGA1_c02720 0.36 +1.0
260,844 - PGA1_c02720 0.37 +0.2
260,847 + PGA1_c02720 0.38 -0.8
260,847 + PGA1_c02720 0.38 -1.5
260,847 + PGA1_c02720 0.38 -0.5
260,847 + PGA1_c02720 0.38 +0.4
260,992 + PGA1_c02720 0.54 -0.7
261,055 - PGA1_c02720 0.61 -0.7
261,117 - PGA1_c02720 0.68 +1.0
261,151 + PGA1_c02720 0.72 -2.0
261,179 + PGA1_c02720 0.75 +0.0
261,179 + PGA1_c02720 0.75 +0.6
261,215 + PGA1_c02720 0.79 -0.8
261,219 + PGA1_c02720 0.80 -2.0
261,220 + PGA1_c02720 0.80 +1.0
261,277 - PGA1_c02720 0.86 -1.1
261,292 + PGA1_c02720 0.88 +0.6
261,325 - -0.6
261,385 + +1.3
261,393 - -2.5
261,407 - +3.3
261,411 - +0.5
261,504 - PGA1_c02730 0.11 +0.6
261,514 + PGA1_c02730 0.12 -3.0
261,531 - PGA1_c02730 0.14 -0.7
261,548 - PGA1_c02730 0.16 +2.2
261,572 + PGA1_c02730 0.19 -0.4
261,575 - PGA1_c02730 0.19 -1.1
261,582 - PGA1_c02730 0.20 +2.2
261,582 - PGA1_c02730 0.20 +1.9
261,596 + PGA1_c02730 0.21 +0.8
261,627 + PGA1_c02730 0.25 -1.1
261,634 + PGA1_c02730 0.26 -0.3
261,657 + PGA1_c02730 0.28 +1.5
261,657 + PGA1_c02730 0.28 -1.2
261,657 + PGA1_c02730 0.28 -0.8
261,657 + PGA1_c02730 0.28 -1.2
261,657 + PGA1_c02730 0.28 +0.7
261,665 - PGA1_c02730 0.29 -2.6
261,665 - PGA1_c02730 0.29 -1.4
261,667 + PGA1_c02730 0.29 -0.3
261,670 - PGA1_c02730 0.30 -0.3
261,693 + PGA1_c02730 0.32 -2.5
261,701 - PGA1_c02730 0.33 -1.3
261,739 - PGA1_c02730 0.38 -0.6
261,807 + PGA1_c02730 0.45 -2.2
261,829 + PGA1_c02730 0.48 -1.0
261,839 - PGA1_c02730 0.49 -1.6
261,867 + PGA1_c02730 0.52 -0.7
261,955 + PGA1_c02730 0.62 +0.2
261,963 - PGA1_c02730 0.63 +0.5
261,963 - PGA1_c02730 0.63 -1.2
262,021 + PGA1_c02730 0.70 +1.2
262,029 - PGA1_c02730 0.71 +0.1
262,029 - PGA1_c02730 0.71 -1.3
262,029 - PGA1_c02730 0.71 -1.0
262,096 + PGA1_c02730 0.78 +0.1
262,130 - PGA1_c02730 0.82 -1.2
262,134 + PGA1_c02730 0.82 -0.5
262,155 + PGA1_c02730 0.85 -0.4
262,155 + PGA1_c02730 0.85 -0.3
262,156 - PGA1_c02730 0.85 +0.2
262,163 - PGA1_c02730 0.86 +1.7
262,163 - PGA1_c02730 0.86 +0.7
262,163 - PGA1_c02730 0.86 -1.1
262,216 + +1.1
262,222 + +1.8
262,332 + -1.2
262,341 - +0.7
262,347 + +0.7
262,348 + -0.0
262,377 + +2.1
262,377 + +0.4
262,385 - +0.6
262,455 + PGA1_c02740 0.15 +1.4
262,455 + PGA1_c02740 0.15 +0.3
262,463 - PGA1_c02740 0.15 -1.0
262,501 + PGA1_c02740 0.19 -1.2
262,617 - PGA1_c02740 0.30 +1.9
262,643 - PGA1_c02740 0.33 +1.2
262,721 - PGA1_c02740 0.40 +0.9
262,740 + PGA1_c02740 0.42 -0.8
262,799 + PGA1_c02740 0.48 -1.1
262,828 + PGA1_c02740 0.50 -0.8
262,833 + PGA1_c02740 0.51 +0.1
262,838 + PGA1_c02740 0.51 +2.1
262,848 + PGA1_c02740 0.52 -0.4
262,849 + PGA1_c02740 0.52 +1.0
262,883 - PGA1_c02740 0.56 +0.8
262,945 + PGA1_c02740 0.62 -1.2
262,945 + PGA1_c02740 0.62 +0.1
262,953 - PGA1_c02740 0.62 +0.6
263,007 - PGA1_c02740 0.67 -0.2
263,109 + PGA1_c02740 0.77 -0.7
263,172 + PGA1_c02740 0.83 -1.3
263,228 + PGA1_c02740 0.89 +0.8
263,228 + PGA1_c02740 0.89 +0.5
263,228 + PGA1_c02740 0.89 +0.2
263,241 + PGA1_c02740 0.90 +0.3
263,241 + PGA1_c02740 0.90 +0.4
263,273 + +1.0

Or see this region's nucleotide sequence