Strain Fitness in Marinobacter adhaerens HP15 around HP15_2352

Experiment: m.b. perchlorate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2350 and HP15_2351 are separated by 71 nucleotidesHP15_2351 and HP15_2352 are separated by 284 nucleotidesHP15_2352 and HP15_2353 are separated by 22 nucleotidesHP15_2353 and HP15_2354 are separated by 11 nucleotides HP15_2350: HP15_2350 - phosphoribosylaminoimidazole carboxylase ATPase subunit, at 2,473,434 to 2,474,552 _2350 HP15_2351: HP15_2351 - superoxide dismutase, Fe, at 2,474,624 to 2,475,202 _2351 HP15_2352: HP15_2352 - sensory box sensor/GGDEF/EAL domain protein, at 2,475,487 to 2,477,547 _2352 HP15_2353: HP15_2353 - LemA family protein, at 2,477,570 to 2,478,157 _2353 HP15_2354: HP15_2354 - peptidase M48, Ste24p, at 2,478,169 to 2,480,166 _2354 Position (kb) 2475 2476 2477 2478Strain fitness (log2 ratio) -2 -1 0 1at 2474.546 kb on + strandat 2474.554 kb on - strandat 2475.244 kb on - strandat 2475.361 kb on + strandat 2475.427 kb on + strandat 2475.440 kb on - strandat 2475.578 kb on + strandat 2475.602 kb on + strandat 2475.610 kb on - strandat 2475.619 kb on + strandat 2475.665 kb on + strandat 2475.681 kb on + strandat 2475.687 kb on - strandat 2475.921 kb on + strand, within HP15_2352at 2475.927 kb on - strand, within HP15_2352at 2475.948 kb on - strand, within HP15_2352at 2475.949 kb on + strand, within HP15_2352at 2475.994 kb on + strand, within HP15_2352at 2475.995 kb on - strand, within HP15_2352at 2476.012 kb on + strand, within HP15_2352at 2476.020 kb on - strand, within HP15_2352at 2476.142 kb on + strand, within HP15_2352at 2476.150 kb on - strand, within HP15_2352at 2476.251 kb on - strand, within HP15_2352at 2476.262 kb on - strand, within HP15_2352at 2476.262 kb on - strand, within HP15_2352at 2476.274 kb on - strand, within HP15_2352at 2476.469 kb on - strand, within HP15_2352at 2476.474 kb on + strand, within HP15_2352at 2476.474 kb on - strand, within HP15_2352at 2476.484 kb on - strand, within HP15_2352at 2476.524 kb on + strand, within HP15_2352at 2476.532 kb on - strand, within HP15_2352at 2476.544 kb on - strand, within HP15_2352at 2476.588 kb on + strand, within HP15_2352at 2476.612 kb on + strand, within HP15_2352at 2476.615 kb on - strand, within HP15_2352at 2476.615 kb on - strand, within HP15_2352at 2476.644 kb on + strand, within HP15_2352at 2476.670 kb on - strand, within HP15_2352at 2476.688 kb on - strand, within HP15_2352at 2476.859 kb on + strand, within HP15_2352at 2476.859 kb on + strand, within HP15_2352at 2476.969 kb on + strand, within HP15_2352at 2476.977 kb on - strand, within HP15_2352at 2477.048 kb on + strand, within HP15_2352at 2477.048 kb on - strand, within HP15_2352at 2477.117 kb on - strand, within HP15_2352at 2477.136 kb on - strand, within HP15_2352at 2477.151 kb on - strand, within HP15_2352at 2477.248 kb on + strand, within HP15_2352at 2477.371 kb on + strandat 2477.380 kb on - strandat 2477.380 kb on - strandat 2477.564 kb on - strandat 2477.564 kb on - strandat 2477.564 kb on - strandat 2477.638 kb on - strand, within HP15_2353at 2477.769 kb on + strand, within HP15_2353at 2477.866 kb on - strand, within HP15_2353at 2477.962 kb on + strand, within HP15_2353at 2478.010 kb on + strand, within HP15_2353at 2478.033 kb on + strand, within HP15_2353at 2478.207 kb on - strandat 2478.210 kb on + strandat 2478.215 kb on + strandat 2478.322 kb on - strandat 2478.415 kb on - strand, within HP15_2354

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM
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2,474,546 + +0.3
2,474,554 - -0.2
2,475,244 - +0.1
2,475,361 + -0.5
2,475,427 + -0.1
2,475,440 - -0.2
2,475,578 + +0.3
2,475,602 + +0.3
2,475,610 - -0.3
2,475,619 + -0.1
2,475,665 + -0.4
2,475,681 + +0.1
2,475,687 - -0.1
2,475,921 + HP15_2352 0.21 +0.1
2,475,927 - HP15_2352 0.21 +0.5
2,475,948 - HP15_2352 0.22 -0.3
2,475,949 + HP15_2352 0.22 -0.9
2,475,994 + HP15_2352 0.25 -0.3
2,475,995 - HP15_2352 0.25 -0.7
2,476,012 + HP15_2352 0.25 -0.6
2,476,020 - HP15_2352 0.26 -0.9
2,476,142 + HP15_2352 0.32 -1.4
2,476,150 - HP15_2352 0.32 -1.0
2,476,251 - HP15_2352 0.37 -0.8
2,476,262 - HP15_2352 0.38 -0.3
2,476,262 - HP15_2352 0.38 +0.6
2,476,274 - HP15_2352 0.38 +0.7
2,476,469 - HP15_2352 0.48 -1.6
2,476,474 + HP15_2352 0.48 -0.8
2,476,474 - HP15_2352 0.48 -0.7
2,476,484 - HP15_2352 0.48 +0.1
2,476,524 + HP15_2352 0.50 -0.8
2,476,532 - HP15_2352 0.51 -1.9
2,476,544 - HP15_2352 0.51 +0.3
2,476,588 + HP15_2352 0.53 -0.5
2,476,612 + HP15_2352 0.55 -0.4
2,476,615 - HP15_2352 0.55 +0.3
2,476,615 - HP15_2352 0.55 -0.7
2,476,644 + HP15_2352 0.56 +0.3
2,476,670 - HP15_2352 0.57 -1.3
2,476,688 - HP15_2352 0.58 -1.5
2,476,859 + HP15_2352 0.67 -1.4
2,476,859 + HP15_2352 0.67 +0.0
2,476,969 + HP15_2352 0.72 +0.7
2,476,977 - HP15_2352 0.72 -0.3
2,477,048 + HP15_2352 0.76 +0.2
2,477,048 - HP15_2352 0.76 -0.5
2,477,117 - HP15_2352 0.79 -0.1
2,477,136 - HP15_2352 0.80 -0.1
2,477,151 - HP15_2352 0.81 -0.2
2,477,248 + HP15_2352 0.85 -0.3
2,477,371 + -0.4
2,477,380 - +0.3
2,477,380 - +0.2
2,477,564 - -0.2
2,477,564 - -0.1
2,477,564 - +0.9
2,477,638 - HP15_2353 0.12 -0.4
2,477,769 + HP15_2353 0.34 -1.4
2,477,866 - HP15_2353 0.50 +0.1
2,477,962 + HP15_2353 0.67 +1.1
2,478,010 + HP15_2353 0.75 +1.0
2,478,033 + HP15_2353 0.79 +0.6
2,478,207 - +0.1
2,478,210 + +0.2
2,478,215 + +0.8
2,478,322 - +0.4
2,478,415 - HP15_2354 0.12 -0.9

Or see this region's nucleotide sequence