Experiment: m.b. perchlorate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1854 and HP15_1855 are separated by 174 nucleotides HP15_1855 and HP15_1856 are separated by 264 nucleotides
HP15_1854: HP15_1854 - transcriptional regulator, LysR family, at 1,953,004 to 1,953,981
_1854
HP15_1855: HP15_1855 - HTH-type transcriptional regulator MalT, at 1,954,156 to 1,956,948
_1855
HP15_1856: HP15_1856 - helicase c2, at 1,957,213 to 1,959,417
_1856
Position (kb)
1954
1955
1956
1957 Strain fitness (log2 ratio)
-1
0
1
2 at 1954.147 kb on + strand at 1954.198 kb on - strand at 1954.246 kb on - strand at 1954.262 kb on - strand at 1954.290 kb on + strand at 1954.393 kb on - strand at 1954.393 kb on - strand at 1954.480 kb on - strand, within HP15_1855 at 1954.559 kb on - strand, within HP15_1855 at 1954.643 kb on + strand, within HP15_1855 at 1954.705 kb on - strand, within HP15_1855 at 1954.764 kb on + strand, within HP15_1855 at 1954.772 kb on - strand, within HP15_1855 at 1954.777 kb on - strand, within HP15_1855 at 1954.852 kb on - strand, within HP15_1855 at 1954.973 kb on + strand, within HP15_1855 at 1954.999 kb on - strand, within HP15_1855 at 1955.052 kb on + strand, within HP15_1855 at 1955.057 kb on + strand, within HP15_1855 at 1955.057 kb on + strand, within HP15_1855 at 1955.096 kb on + strand, within HP15_1855 at 1955.184 kb on + strand, within HP15_1855 at 1955.197 kb on + strand, within HP15_1855 at 1955.207 kb on + strand, within HP15_1855 at 1955.355 kb on + strand, within HP15_1855 at 1955.402 kb on + strand, within HP15_1855 at 1955.410 kb on - strand, within HP15_1855 at 1955.455 kb on + strand, within HP15_1855 at 1955.459 kb on + strand, within HP15_1855 at 1955.495 kb on + strand, within HP15_1855 at 1955.503 kb on - strand, within HP15_1855 at 1955.550 kb on + strand, within HP15_1855 at 1955.579 kb on - strand, within HP15_1855 at 1955.653 kb on - strand, within HP15_1855 at 1955.730 kb on + strand, within HP15_1855 at 1955.744 kb on + strand, within HP15_1855 at 1955.746 kb on + strand, within HP15_1855 at 1955.806 kb on + strand, within HP15_1855 at 1955.925 kb on - strand, within HP15_1855 at 1955.925 kb on - strand, within HP15_1855 at 1955.925 kb on - strand, within HP15_1855 at 1955.950 kb on - strand, within HP15_1855 at 1955.969 kb on + strand, within HP15_1855 at 1956.236 kb on + strand, within HP15_1855 at 1956.604 kb on + strand, within HP15_1855 at 1956.719 kb on + strand at 1956.719 kb on + strand at 1956.778 kb on - strand at 1956.899 kb on + strand at 1957.121 kb on + strand at 1957.155 kb on - strand at 1957.164 kb on + strand at 1957.258 kb on + strand at 1957.315 kb on + strand at 1957.315 kb on + strand at 1957.320 kb on + strand at 1957.355 kb on + strand at 1957.550 kb on - strand, within HP15_1856 at 1957.555 kb on + strand, within HP15_1856 at 1957.568 kb on - strand, within HP15_1856 at 1957.712 kb on + strand, within HP15_1856 at 1957.712 kb on + strand, within HP15_1856 at 1957.720 kb on - strand, within HP15_1856 at 1957.796 kb on - strand, within HP15_1856 at 1957.854 kb on - strand, within HP15_1856 at 1957.906 kb on - strand, within HP15_1856 at 1957.920 kb on - strand, within HP15_1856 at 1957.920 kb on - strand, within HP15_1856 at 1957.920 kb on - strand, within HP15_1856
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM remove 1,954,147 + +0.1 1,954,198 - +1.7 1,954,246 - +1.1 1,954,262 - +2.3 1,954,290 + +0.5 1,954,393 - +1.3 1,954,393 - +2.7 1,954,480 - HP15_1855 0.12 +1.1 1,954,559 - HP15_1855 0.14 +1.3 1,954,643 + HP15_1855 0.17 -0.4 1,954,705 - HP15_1855 0.20 +1.6 1,954,764 + HP15_1855 0.22 +1.1 1,954,772 - HP15_1855 0.22 +1.5 1,954,777 - HP15_1855 0.22 +0.8 1,954,852 - HP15_1855 0.25 +1.6 1,954,973 + HP15_1855 0.29 +0.5 1,954,999 - HP15_1855 0.30 -0.4 1,955,052 + HP15_1855 0.32 +0.6 1,955,057 + HP15_1855 0.32 -0.6 1,955,057 + HP15_1855 0.32 -1.0 1,955,096 + HP15_1855 0.34 +0.5 1,955,184 + HP15_1855 0.37 +0.2 1,955,197 + HP15_1855 0.37 +0.5 1,955,207 + HP15_1855 0.38 -0.6 1,955,355 + HP15_1855 0.43 +2.6 1,955,402 + HP15_1855 0.45 -0.4 1,955,410 - HP15_1855 0.45 +0.4 1,955,455 + HP15_1855 0.47 -0.9 1,955,459 + HP15_1855 0.47 -1.1 1,955,495 + HP15_1855 0.48 +0.7 1,955,503 - HP15_1855 0.48 -0.0 1,955,550 + HP15_1855 0.50 -0.4 1,955,579 - HP15_1855 0.51 +0.9 1,955,653 - HP15_1855 0.54 -0.2 1,955,730 + HP15_1855 0.56 +2.1 1,955,744 + HP15_1855 0.57 +1.1 1,955,746 + HP15_1855 0.57 +1.2 1,955,806 + HP15_1855 0.59 -0.7 1,955,925 - HP15_1855 0.63 -0.4 1,955,925 - HP15_1855 0.63 -1.3 1,955,925 - HP15_1855 0.63 +0.5 1,955,950 - HP15_1855 0.64 +2.7 1,955,969 + HP15_1855 0.65 -1.1 1,956,236 + HP15_1855 0.74 -0.7 1,956,604 + HP15_1855 0.88 -0.1 1,956,719 + +1.6 1,956,719 + +0.9 1,956,778 - +0.4 1,956,899 + -0.3 1,957,121 + +0.8 1,957,155 - +0.1 1,957,164 + +0.1 1,957,258 + -0.3 1,957,315 + -0.7 1,957,315 + +0.9 1,957,320 + +0.2 1,957,355 + +1.4 1,957,550 - HP15_1856 0.15 +0.3 1,957,555 + HP15_1856 0.16 +0.9 1,957,568 - HP15_1856 0.16 +0.9 1,957,712 + HP15_1856 0.23 -0.2 1,957,712 + HP15_1856 0.23 +1.9 1,957,720 - HP15_1856 0.23 +0.6 1,957,796 - HP15_1856 0.26 -0.2 1,957,854 - HP15_1856 0.29 +1.6 1,957,906 - HP15_1856 0.31 -0.1 1,957,920 - HP15_1856 0.32 +0.9 1,957,920 - HP15_1856 0.32 -0.4 1,957,920 - HP15_1856 0.32 +0.6
Or see this region's nucleotide sequence