Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c18330

Experiment: m.b. D-Cycloserine 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. D-Cycloserine 0.0625 mg/ml
1,914,235	-		PGA1_c18310	0.59	+0.0
1,914,254	+		PGA1_c18310	0.63	-1.1
1,914,254	+		PGA1_c18310	0.63	+1.4
1,914,254	+		PGA1_c18310	0.63	-0.4
1,914,254	+		PGA1_c18310	0.63	-1.0
1,914,262	-		PGA1_c18310	0.64	+0.3
1,914,262	-		PGA1_c18310	0.64	-2.7
1,914,262	-		PGA1_c18310	0.64	-0.4
1,914,264	+		PGA1_c18310	0.65	-1.8
1,914,264	+		PGA1_c18310	0.65	-0.0
1,914,272	-		PGA1_c18310	0.66	+0.8
1,914,298	+		PGA1_c18310	0.71	+0.5
1,914,391	+		PGA1_c18310	0.87	-2.7
1,914,391	+		PGA1_c18310	0.87	+1.5
1,914,399	-		PGA1_c18310	0.89	-0.8
1,914,409	-				+0.1
1,914,430	-				+1.8
1,914,467	+				+0.7
1,914,475	-				-0.7
1,914,579	+		PGA1_c18320	0.21	+0.8
1,914,587	-		PGA1_c18320	0.22	-0.5
1,914,605	+		PGA1_c18320	0.25	+0.6
1,914,615	+		PGA1_c18320	0.27	-1.9
1,914,623	-		PGA1_c18320	0.28	-3.0
1,914,623	-		PGA1_c18320	0.28	+1.0
1,914,623	-		PGA1_c18320	0.28	-0.8
1,914,685	+		PGA1_c18320	0.38	+1.6
1,914,691	+		PGA1_c18320	0.39	+0.1
1,914,724	+		PGA1_c18320	0.45	+0.5
1,914,725	-		PGA1_c18320	0.45	-0.0
1,914,725	-		PGA1_c18320	0.45	+0.2
1,914,725	-		PGA1_c18320	0.45	-0.5
1,914,738	+		PGA1_c18320	0.47	+1.5
1,914,770	+		PGA1_c18320	0.52	-1.5
1,914,780	-		PGA1_c18320	0.54	+0.7
1,914,780	-		PGA1_c18320	0.54	-0.7
1,914,809	+		PGA1_c18320	0.59	-2.2
1,914,815	+		PGA1_c18320	0.60	+0.5
1,914,823	-		PGA1_c18320	0.61	+0.8
1,914,829	-		PGA1_c18320	0.62	+0.1
1,914,867	+		PGA1_c18320	0.68	-1.8
1,914,867	+		PGA1_c18320	0.68	-0.0
1,914,875	-		PGA1_c18320	0.70	+0.3
1,914,998	+				-1.1
1,915,023	-				-0.3
1,915,023	-				+0.2
1,915,044	-				+0.5
1,915,046	-				+0.5
1,915,060	-				+1.6
1,915,062	+				+1.6
1,915,071	-				-1.0
1,915,102	+				+0.9
1,915,102	+				+1.1
1,915,166	+		PGA1_c18330	0.13	-0.2
1,915,166	+		PGA1_c18330	0.13	-0.7
1,915,232	+		PGA1_c18330	0.20	-0.0
1,915,240	-		PGA1_c18330	0.21	-2.0
1,915,291	-		PGA1_c18330	0.27	-1.4
1,915,300	-		PGA1_c18330	0.28	-0.0
1,915,316	+		PGA1_c18330	0.30	+0.6
1,915,316	+		PGA1_c18330	0.30	+1.3
1,915,324	-		PGA1_c18330	0.31	+0.7
1,915,324	-		PGA1_c18330	0.31	+0.1
1,915,324	-		PGA1_c18330	0.31	-0.4
1,915,324	-		PGA1_c18330	0.31	-0.8
1,915,324	-		PGA1_c18330	0.31	+2.0
1,915,331	+		PGA1_c18330	0.31	-0.5
1,915,331	+		PGA1_c18330	0.31	+0.2
1,915,429	-		PGA1_c18330	0.42	-0.3
1,915,506	+		PGA1_c18330	0.51	-0.5
1,915,525	+		PGA1_c18330	0.53	-0.8
1,915,550	+		PGA1_c18330	0.56	-1.6
1,915,556	-		PGA1_c18330	0.56	-1.3
1,915,596	-		PGA1_c18330	0.61	-0.5
1,915,609	-		PGA1_c18330	0.62	+0.4
1,915,658	+		PGA1_c18330	0.68	-0.1
1,915,666	-		PGA1_c18330	0.69	-2.3
1,915,834	-		PGA1_c18330	0.87	-0.7
1,915,895	-				+1.4
1,915,920	+				+1.5
1,915,930	+				-0.2
1,915,944	+				+1.1
1,915,956	+				+1.8
1,915,956	+				+0.7
1,915,964	-				+0.5
1,915,964	-				-1.7
1,915,964	-				-1.9
1,916,091	+		PGA1_c18340	0.32	+0.9
1,916,091	+		PGA1_c18340	0.32	+0.3
1,916,206	+		PGA1_c18340	0.57	-0.2
1,916,279	+		PGA1_c18340	0.73	-1.3
1,916,279	+		PGA1_c18340	0.73	-0.4
1,916,298	+		PGA1_c18340	0.77	-0.2
1,916,321	-		PGA1_c18340	0.82	-2.5
1,916,402	+				-1.1
1,916,449	+				+0.1
1,916,451	-				+0.5
1,916,457	-				+0.6
1,916,457	-				+0.4
1,916,468	+				+0.5
1,916,512	+				-1.1
1,916,512	+				+1.8
1,916,520	-				+1.0
1,916,520	-				+0.6
1,916,520	-				-0.9
1,916,520	-				+0.7
1,916,629	+				+1.0
1,916,637	-				+0.1
1,916,659	+				-1.7
1,916,674	+		PGA1_c18350	0.11	+0.2
1,916,762	+		PGA1_c18350	0.32	+1.6
1,916,763	-		PGA1_c18350	0.32	+1.5
1,916,777	+		PGA1_c18350	0.35	+2.9
1,916,777	+		PGA1_c18350	0.35	-1.5
1,916,783	+		PGA1_c18350	0.37	-2.7
1,916,783	+		PGA1_c18350	0.37	+0.7
1,916,791	-		PGA1_c18350	0.39	+0.5
1,916,823	+		PGA1_c18350	0.46	+2.2
1,916,859	-		PGA1_c18350	0.55	+1.0