Experiment: L-Glutamic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1527 and Sama_1528 are separated by 90 nucleotides Sama_1528 and Sama_1529 are separated by 113 nucleotides
Sama_1527: Sama_1527 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 1,857,000 to 1,858,064
_1527
Sama_1528: Sama_1528 - GntR family transcriptional regulator (RefSeq), at 1,858,155 to 1,858,826
_1528
Sama_1529: Sama_1529 - fatty aldehyde dehydrogenase (RefSeq), at 1,858,940 to 1,860,487
_1529
Position (kb)
1858
1859 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1857.300 kb on - strand, within Sama_1527 at 1857.300 kb on - strand, within Sama_1527 at 1857.446 kb on - strand, within Sama_1527 at 1857.474 kb on - strand, within Sama_1527 at 1857.607 kb on - strand, within Sama_1527 at 1857.638 kb on - strand, within Sama_1527 at 1857.722 kb on - strand, within Sama_1527 at 1857.748 kb on - strand, within Sama_1527 at 1857.839 kb on + strand, within Sama_1527 at 1857.839 kb on + strand, within Sama_1527 at 1858.057 kb on + strand at 1858.069 kb on - strand at 1858.131 kb on - strand at 1858.131 kb on - strand at 1858.154 kb on - strand at 1858.207 kb on - strand at 1858.207 kb on - strand at 1858.207 kb on - strand at 1858.207 kb on - strand at 1858.207 kb on - strand at 1858.329 kb on - strand, within Sama_1528 at 1858.331 kb on - strand, within Sama_1528 at 1858.331 kb on - strand, within Sama_1528 at 1858.347 kb on - strand, within Sama_1528 at 1858.404 kb on - strand, within Sama_1528 at 1858.404 kb on - strand, within Sama_1528 at 1858.683 kb on - strand, within Sama_1528 at 1858.695 kb on - strand, within Sama_1528 at 1858.771 kb on - strand at 1858.771 kb on - strand at 1858.777 kb on - strand at 1858.791 kb on - strand at 1858.839 kb on - strand at 1858.840 kb on + strand at 1858.884 kb on + strand at 1858.885 kb on - strand at 1858.885 kb on - strand at 1858.972 kb on + strand at 1858.972 kb on + strand at 1858.973 kb on - strand at 1858.973 kb on - strand at 1858.973 kb on - strand at 1859.002 kb on + strand at 1859.003 kb on - strand at 1859.003 kb on - strand at 1859.017 kb on + strand at 1859.018 kb on - strand at 1859.018 kb on - strand at 1859.027 kb on - strand at 1859.161 kb on + strand, within Sama_1529 at 1859.180 kb on + strand, within Sama_1529 at 1859.180 kb on + strand, within Sama_1529 at 1859.181 kb on - strand, within Sama_1529 at 1859.181 kb on - strand, within Sama_1529 at 1859.181 kb on - strand, within Sama_1529 at 1859.285 kb on + strand, within Sama_1529 at 1859.286 kb on - strand, within Sama_1529 at 1859.286 kb on - strand, within Sama_1529 at 1859.423 kb on + strand, within Sama_1529 at 1859.440 kb on + strand, within Sama_1529 at 1859.441 kb on - strand, within Sama_1529 at 1859.468 kb on + strand, within Sama_1529 at 1859.510 kb on + strand, within Sama_1529 at 1859.511 kb on - strand, within Sama_1529 at 1859.511 kb on - strand, within Sama_1529 at 1859.519 kb on + strand, within Sama_1529 at 1859.532 kb on + strand, within Sama_1529 at 1859.532 kb on + strand, within Sama_1529 at 1859.532 kb on + strand, within Sama_1529 at 1859.533 kb on - strand, within Sama_1529 at 1859.533 kb on - strand, within Sama_1529 at 1859.533 kb on - strand, within Sama_1529 at 1859.533 kb on - strand, within Sama_1529 at 1859.533 kb on - strand, within Sama_1529 at 1859.581 kb on + strand, within Sama_1529 at 1859.700 kb on + strand, within Sama_1529 at 1859.700 kb on + strand, within Sama_1529 at 1859.701 kb on - strand, within Sama_1529 at 1859.701 kb on - strand, within Sama_1529 at 1859.759 kb on - strand, within Sama_1529 at 1859.759 kb on - strand, within Sama_1529
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic remove 1,857,300 - Sama_1527 0.28 -1.8 1,857,300 - Sama_1527 0.28 -0.9 1,857,446 - Sama_1527 0.42 -0.4 1,857,474 - Sama_1527 0.45 +0.0 1,857,607 - Sama_1527 0.57 -1.6 1,857,638 - Sama_1527 0.60 -1.0 1,857,722 - Sama_1527 0.68 -1.9 1,857,748 - Sama_1527 0.70 +0.5 1,857,839 + Sama_1527 0.79 -1.1 1,857,839 + Sama_1527 0.79 +1.2 1,858,057 + -1.6 1,858,069 - -1.0 1,858,131 - -0.1 1,858,131 - -1.5 1,858,154 - +0.5 1,858,207 - +0.1 1,858,207 - -0.8 1,858,207 - -1.1 1,858,207 - -0.4 1,858,207 - +0.1 1,858,329 - Sama_1528 0.26 -2.8 1,858,331 - Sama_1528 0.26 -0.9 1,858,331 - Sama_1528 0.26 +0.2 1,858,347 - Sama_1528 0.29 -1.9 1,858,404 - Sama_1528 0.37 +0.2 1,858,404 - Sama_1528 0.37 +0.2 1,858,683 - Sama_1528 0.79 -0.9 1,858,695 - Sama_1528 0.80 -0.4 1,858,771 - -0.8 1,858,771 - -1.1 1,858,777 - -0.4 1,858,791 - -1.1 1,858,839 - -0.7 1,858,840 + -0.8 1,858,884 + -0.1 1,858,885 - -1.2 1,858,885 - +0.1 1,858,972 + -0.4 1,858,972 + -2.2 1,858,973 - -0.2 1,858,973 - -1.0 1,858,973 - -0.4 1,859,002 + -1.2 1,859,003 - -0.8 1,859,003 - +0.2 1,859,017 + -0.4 1,859,018 - +1.0 1,859,018 - +1.2 1,859,027 - +0.1 1,859,161 + Sama_1529 0.14 +0.2 1,859,180 + Sama_1529 0.16 -1.6 1,859,180 + Sama_1529 0.16 -0.5 1,859,181 - Sama_1529 0.16 -0.1 1,859,181 - Sama_1529 0.16 -0.2 1,859,181 - Sama_1529 0.16 -0.6 1,859,285 + Sama_1529 0.22 +0.3 1,859,286 - Sama_1529 0.22 -0.1 1,859,286 - Sama_1529 0.22 -0.2 1,859,423 + Sama_1529 0.31 +0.8 1,859,440 + Sama_1529 0.32 -0.4 1,859,441 - Sama_1529 0.32 +0.6 1,859,468 + Sama_1529 0.34 +0.2 1,859,510 + Sama_1529 0.37 +0.5 1,859,511 - Sama_1529 0.37 +1.2 1,859,511 - Sama_1529 0.37 -1.4 1,859,519 + Sama_1529 0.37 +0.1 1,859,532 + Sama_1529 0.38 +0.1 1,859,532 + Sama_1529 0.38 -0.4 1,859,532 + Sama_1529 0.38 -0.6 1,859,533 - Sama_1529 0.38 +0.4 1,859,533 - Sama_1529 0.38 +0.1 1,859,533 - Sama_1529 0.38 -0.8 1,859,533 - Sama_1529 0.38 -1.1 1,859,533 - Sama_1529 0.38 +0.2 1,859,581 + Sama_1529 0.41 +0.4 1,859,700 + Sama_1529 0.49 +1.2 1,859,700 + Sama_1529 0.49 +0.2 1,859,701 - Sama_1529 0.49 -1.6 1,859,701 - Sama_1529 0.49 +1.2 1,859,759 - Sama_1529 0.53 +0.2 1,859,759 - Sama_1529 0.53 -0.4
Or see this region's nucleotide sequence