Experiment: L-Glutamic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0446 and rpmE are separated by 147 nucleotides rpmE and Sama_0448 are separated by 502 nucleotides Sama_0448 and Sama_0449 are separated by 149 nucleotides
Sama_0446: Sama_0446 - hypothetical protein (RefSeq), at 552,004 to 552,729
_0446
Sama_0447: rpmE - 50S ribosomal protein L31 (RefSeq), at 552,877 to 553,089
rpmE
Sama_0448: Sama_0448 - malate dehydrogenase (RefSeq), at 553,592 to 554,839
_0448
Sama_0449: Sama_0449 - regulatory protein CsrD (RefSeq), at 554,989 to 556,896
_0449
Position (kb) 553
554
555 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 552.603 kb on + strand, within Sama_0446 at 552.603 kb on + strand, within Sama_0446 at 552.603 kb on + strand, within Sama_0446 at 552.603 kb on + strand, within Sama_0446 at 552.639 kb on + strand, within Sama_0446 at 552.639 kb on + strand, within Sama_0446 at 552.639 kb on + strand, within Sama_0446 at 552.639 kb on + strand, within Sama_0446 at 552.639 kb on + strand, within Sama_0446 at 552.640 kb on - strand, within Sama_0446 at 552.640 kb on - strand, within Sama_0446 at 552.640 kb on - strand, within Sama_0446 at 552.801 kb on + strand at 553.197 kb on + strand at 553.197 kb on + strand at 553.197 kb on + strand at 553.197 kb on + strand at 553.198 kb on - strand at 553.198 kb on - strand at 553.198 kb on - strand at 553.198 kb on - strand at 553.303 kb on + strand at 553.307 kb on + strand at 553.307 kb on + strand at 553.307 kb on + strand at 553.307 kb on + strand at 553.308 kb on - strand at 553.308 kb on - strand at 553.308 kb on - strand at 553.330 kb on + strand at 553.353 kb on + strand at 553.354 kb on - strand at 553.354 kb on - strand at 553.354 kb on - strand at 553.406 kb on + strand at 553.407 kb on - strand at 553.488 kb on - strand at 553.511 kb on + strand at 553.511 kb on + strand at 553.515 kb on - strand at 553.515 kb on - strand at 553.515 kb on - strand at 553.568 kb on - strand at 553.623 kb on - strand at 553.623 kb on - strand at 553.703 kb on + strand at 553.744 kb on + strand, within Sama_0448 at 553.745 kb on - strand, within Sama_0448 at 553.766 kb on + strand, within Sama_0448 at 553.767 kb on - strand, within Sama_0448 at 553.857 kb on + strand, within Sama_0448 at 553.946 kb on - strand, within Sama_0448 at 554.091 kb on + strand, within Sama_0448 at 554.091 kb on + strand, within Sama_0448 at 554.091 kb on + strand, within Sama_0448 at 554.092 kb on - strand, within Sama_0448 at 554.107 kb on + strand, within Sama_0448 at 554.107 kb on + strand, within Sama_0448 at 554.108 kb on - strand, within Sama_0448 at 554.108 kb on - strand, within Sama_0448 at 554.113 kb on + strand, within Sama_0448 at 554.113 kb on + strand, within Sama_0448 at 554.113 kb on + strand, within Sama_0448 at 554.114 kb on - strand, within Sama_0448 at 554.114 kb on - strand, within Sama_0448 at 554.134 kb on + strand, within Sama_0448 at 554.135 kb on - strand, within Sama_0448 at 554.135 kb on - strand, within Sama_0448 at 554.146 kb on + strand, within Sama_0448 at 554.146 kb on + strand, within Sama_0448 at 554.194 kb on + strand, within Sama_0448 at 554.194 kb on + strand, within Sama_0448 at 554.194 kb on + strand, within Sama_0448 at 554.195 kb on - strand, within Sama_0448 at 554.195 kb on - strand, within Sama_0448 at 554.237 kb on + strand, within Sama_0448 at 554.237 kb on + strand, within Sama_0448 at 554.237 kb on + strand, within Sama_0448 at 554.238 kb on - strand, within Sama_0448 at 554.238 kb on - strand, within Sama_0448 at 554.238 kb on - strand, within Sama_0448 at 554.238 kb on - strand, within Sama_0448 at 554.238 kb on - strand, within Sama_0448 at 554.291 kb on + strand, within Sama_0448 at 554.291 kb on + strand, within Sama_0448 at 554.291 kb on + strand, within Sama_0448 at 554.291 kb on + strand, within Sama_0448 at 554.292 kb on - strand, within Sama_0448 at 554.292 kb on - strand, within Sama_0448 at 554.385 kb on + strand, within Sama_0448 at 554.385 kb on + strand, within Sama_0448 at 554.385 kb on + strand, within Sama_0448 at 554.385 kb on + strand, within Sama_0448 at 554.385 kb on + strand, within Sama_0448 at 554.385 kb on + strand, within Sama_0448 at 554.386 kb on - strand, within Sama_0448 at 554.386 kb on - strand, within Sama_0448 at 554.386 kb on - strand, within Sama_0448 at 554.535 kb on + strand, within Sama_0448 at 554.535 kb on + strand, within Sama_0448 at 554.536 kb on - strand, within Sama_0448 at 554.717 kb on + strand at 554.717 kb on + strand at 554.717 kb on + strand at 554.717 kb on + strand at 554.717 kb on + strand at 554.717 kb on + strand at 554.717 kb on + strand at 554.717 kb on + strand at 554.718 kb on - strand at 554.718 kb on - strand at 554.718 kb on - strand at 554.718 kb on - strand at 554.718 kb on - strand at 554.718 kb on - strand at 554.828 kb on + strand at 554.828 kb on + strand at 554.828 kb on + strand at 554.829 kb on - strand at 554.829 kb on - strand at 554.842 kb on + strand at 554.842 kb on + strand at 554.843 kb on - strand at 554.851 kb on + strand at 554.851 kb on + strand at 554.852 kb on - strand at 554.852 kb on - strand at 554.857 kb on + strand at 554.858 kb on - strand at 554.904 kb on + strand at 554.905 kb on - strand at 554.957 kb on + strand at 554.957 kb on + strand at 554.957 kb on + strand at 554.957 kb on + strand at 554.957 kb on + strand at 554.957 kb on + strand at 554.957 kb on + strand at 554.957 kb on + strand at 554.957 kb on + strand at 554.958 kb on - strand at 554.958 kb on - strand at 554.958 kb on - strand at 554.958 kb on - strand at 554.958 kb on - strand at 554.958 kb on - strand at 554.958 kb on - strand at 554.958 kb on - strand at 554.958 kb on - strand at 554.964 kb on + strand at 554.964 kb on + strand at 554.964 kb on + strand at 554.965 kb on - strand at 554.965 kb on - strand at 555.092 kb on + strand at 555.093 kb on - strand at 555.103 kb on + strand at 555.158 kb on - strand at 555.158 kb on - strand at 555.158 kb on - strand at 555.187 kb on - strand, within Sama_0449 at 555.214 kb on + strand, within Sama_0449 at 555.214 kb on + strand, within Sama_0449 at 555.215 kb on - strand, within Sama_0449 at 555.215 kb on - strand, within Sama_0449 at 555.215 kb on - strand, within Sama_0449 at 555.215 kb on - strand, within Sama_0449 at 555.216 kb on + strand, within Sama_0449 at 555.216 kb on + strand, within Sama_0449 at 555.257 kb on + strand, within Sama_0449 at 555.257 kb on + strand, within Sama_0449 at 555.258 kb on - strand, within Sama_0449 at 555.258 kb on - strand, within Sama_0449 at 555.266 kb on - strand, within Sama_0449 at 555.296 kb on + strand, within Sama_0449 at 555.296 kb on + strand, within Sama_0449 at 555.296 kb on + strand, within Sama_0449 at 555.296 kb on + strand, within Sama_0449 at 555.297 kb on - strand, within Sama_0449 at 555.297 kb on - strand, within Sama_0449 at 555.297 kb on - strand, within Sama_0449 at 555.301 kb on + strand, within Sama_0449 at 555.316 kb on + strand, within Sama_0449 at 555.316 kb on + strand, within Sama_0449 at 555.407 kb on + strand, within Sama_0449 at 555.407 kb on + strand, within Sama_0449 at 555.407 kb on + strand, within Sama_0449 at 555.408 kb on - strand, within Sama_0449 at 555.408 kb on - strand, within Sama_0449 at 555.408 kb on - strand, within Sama_0449 at 555.411 kb on + strand, within Sama_0449 at 555.411 kb on + strand, within Sama_0449 at 555.411 kb on + strand, within Sama_0449 at 555.411 kb on + strand, within Sama_0449 at 555.411 kb on + strand, within Sama_0449 at 555.411 kb on + strand, within Sama_0449 at 555.411 kb on + strand, within Sama_0449 at 555.412 kb on - strand, within Sama_0449 at 555.412 kb on - strand, within Sama_0449 at 555.412 kb on - strand, within Sama_0449 at 555.412 kb on - strand, within Sama_0449 at 555.412 kb on - strand, within Sama_0449 at 555.412 kb on - strand, within Sama_0449 at 555.412 kb on - strand, within Sama_0449 at 555.412 kb on - strand, within Sama_0449 at 555.412 kb on - strand, within Sama_0449 at 555.412 kb on - strand, within Sama_0449 at 555.413 kb on + strand, within Sama_0449 at 555.413 kb on + strand, within Sama_0449 at 555.413 kb on + strand, within Sama_0449 at 555.413 kb on + strand, within Sama_0449 at 555.413 kb on + strand, within Sama_0449 at 555.413 kb on + strand, within Sama_0449 at 555.413 kb on + strand, within Sama_0449 at 555.414 kb on - strand, within Sama_0449 at 555.414 kb on - strand, within Sama_0449 at 555.476 kb on + strand, within Sama_0449 at 555.476 kb on + strand, within Sama_0449 at 555.476 kb on + strand, within Sama_0449 at 555.477 kb on - strand, within Sama_0449 at 555.477 kb on - strand, within Sama_0449 at 555.477 kb on - strand, within Sama_0449 at 555.477 kb on - strand, within Sama_0449 at 555.505 kb on - strand, within Sama_0449 at 555.564 kb on - strand, within Sama_0449 at 555.564 kb on - strand, within Sama_0449 at 555.634 kb on - strand, within Sama_0449 at 555.639 kb on + strand, within Sama_0449 at 555.651 kb on + strand, within Sama_0449 at 555.652 kb on - strand, within Sama_0449 at 555.695 kb on + strand, within Sama_0449 at 555.754 kb on + strand, within Sama_0449 at 555.754 kb on + strand, within Sama_0449 at 555.754 kb on + strand, within Sama_0449 at 555.754 kb on + strand, within Sama_0449 at 555.754 kb on + strand, within Sama_0449 at 555.754 kb on + strand, within Sama_0449 at 555.755 kb on - strand, within Sama_0449 at 555.755 kb on - strand, within Sama_0449 at 555.755 kb on - strand, within Sama_0449 at 555.780 kb on + strand, within Sama_0449 at 555.781 kb on - strand, within Sama_0449 at 555.781 kb on - strand, within Sama_0449
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic remove 552,603 + Sama_0446 0.83 -0.5 552,603 + Sama_0446 0.83 +2.0 552,603 + Sama_0446 0.83 +1.8 552,603 + Sama_0446 0.83 -1.1 552,639 + Sama_0446 0.87 -1.3 552,639 + Sama_0446 0.87 +0.1 552,639 + Sama_0446 0.87 +1.4 552,639 + Sama_0446 0.87 -1.4 552,639 + Sama_0446 0.87 +0.5 552,640 - Sama_0446 0.88 +2.3 552,640 - Sama_0446 0.88 -1.2 552,640 - Sama_0446 0.88 +0.4 552,801 + +3.2 553,197 + +0.3 553,197 + -1.0 553,197 + -0.6 553,197 + +0.7 553,198 - -1.5 553,198 - +0.2 553,198 - -0.3 553,198 - -0.4 553,303 + -0.5 553,307 + -0.0 553,307 + -1.6 553,307 + +0.7 553,307 + -1.4 553,308 - -1.0 553,308 - -1.3 553,308 - -0.5 553,330 + -2.4 553,353 + -0.2 553,354 - +0.2 553,354 - -1.8 553,354 - -1.1 553,406 + -0.6 553,407 - -0.8 553,488 - -2.6 553,511 + -1.4 553,511 + +0.0 553,515 - -1.0 553,515 - -1.8 553,515 - -0.5 553,568 - -1.5 553,623 - -3.0 553,623 - -1.3 553,703 + +0.0 553,744 + Sama_0448 0.12 -0.5 553,745 - Sama_0448 0.12 -1.3 553,766 + Sama_0448 0.14 -1.7 553,767 - Sama_0448 0.14 +0.8 553,857 + Sama_0448 0.21 -1.0 553,946 - Sama_0448 0.28 -2.6 554,091 + Sama_0448 0.40 -2.9 554,091 + Sama_0448 0.40 -0.3 554,091 + Sama_0448 0.40 -2.1 554,092 - Sama_0448 0.40 -1.8 554,107 + Sama_0448 0.41 -1.6 554,107 + Sama_0448 0.41 -3.0 554,108 - Sama_0448 0.41 -1.4 554,108 - Sama_0448 0.41 +0.0 554,113 + Sama_0448 0.42 +0.2 554,113 + Sama_0448 0.42 -1.6 554,113 + Sama_0448 0.42 -1.8 554,114 - Sama_0448 0.42 -1.3 554,114 - Sama_0448 0.42 -1.9 554,134 + Sama_0448 0.43 -1.3 554,135 - Sama_0448 0.44 -0.8 554,135 - Sama_0448 0.44 -1.1 554,146 + Sama_0448 0.44 -0.8 554,146 + Sama_0448 0.44 -1.3 554,194 + Sama_0448 0.48 -1.6 554,194 + Sama_0448 0.48 -2.6 554,194 + Sama_0448 0.48 -1.0 554,195 - Sama_0448 0.48 -2.0 554,195 - Sama_0448 0.48 -1.6 554,237 + Sama_0448 0.52 -0.9 554,237 + Sama_0448 0.52 -0.2 554,237 + Sama_0448 0.52 -1.9 554,238 - Sama_0448 0.52 -1.3 554,238 - Sama_0448 0.52 -1.5 554,238 - Sama_0448 0.52 -2.6 554,238 - Sama_0448 0.52 -3.1 554,238 - Sama_0448 0.52 -1.7 554,291 + Sama_0448 0.56 -1.8 554,291 + Sama_0448 0.56 -1.4 554,291 + Sama_0448 0.56 -1.2 554,291 + Sama_0448 0.56 -3.0 554,292 - Sama_0448 0.56 -2.0 554,292 - Sama_0448 0.56 -1.9 554,385 + Sama_0448 0.64 +0.8 554,385 + Sama_0448 0.64 -2.3 554,385 + Sama_0448 0.64 -2.2 554,385 + Sama_0448 0.64 -0.3 554,385 + Sama_0448 0.64 -2.4 554,385 + Sama_0448 0.64 -1.2 554,386 - Sama_0448 0.64 -0.8 554,386 - Sama_0448 0.64 +1.8 554,386 - Sama_0448 0.64 +0.2 554,535 + Sama_0448 0.76 -1.1 554,535 + Sama_0448 0.76 -2.0 554,536 - Sama_0448 0.76 +1.2 554,717 + -2.1 554,717 + +0.2 554,717 + -0.6 554,717 + -1.3 554,717 + -1.3 554,717 + -1.2 554,717 + -2.2 554,717 + -2.2 554,718 - +0.2 554,718 - +0.8 554,718 - -1.9 554,718 - -1.5 554,718 - -1.5 554,718 - -1.3 554,828 + +0.1 554,828 + -0.5 554,828 + -1.0 554,829 - -1.8 554,829 - -0.9 554,842 + +0.1 554,842 + +0.5 554,843 - -0.6 554,851 + -0.5 554,851 + -0.6 554,852 - -0.0 554,852 - -0.8 554,857 + +0.8 554,858 - -0.4 554,904 + +3.1 554,905 - -0.4 554,957 + +2.2 554,957 + +0.5 554,957 + +0.4 554,957 + +0.3 554,957 + +0.8 554,957 + -0.5 554,957 + -0.3 554,957 + -0.2 554,957 + -1.3 554,958 - +1.2 554,958 - +0.7 554,958 - +0.2 554,958 - -0.8 554,958 - +1.4 554,958 - +0.8 554,958 - +0.7 554,958 - +0.8 554,958 - +0.9 554,964 + -0.8 554,964 + +2.6 554,964 + +0.1 554,965 - -0.2 554,965 - -0.9 555,092 + -0.1 555,093 - +0.1 555,103 + +1.4 555,158 - +2.8 555,158 - +0.9 555,158 - +0.8 555,187 - Sama_0449 0.10 +0.7 555,214 + Sama_0449 0.12 -1.0 555,214 + Sama_0449 0.12 +0.5 555,215 - Sama_0449 0.12 +0.4 555,215 - Sama_0449 0.12 +0.5 555,215 - Sama_0449 0.12 +0.2 555,215 - Sama_0449 0.12 -0.5 555,216 + Sama_0449 0.12 +1.7 555,216 + Sama_0449 0.12 +0.4 555,257 + Sama_0449 0.14 +1.1 555,257 + Sama_0449 0.14 +1.8 555,258 - Sama_0449 0.14 +0.2 555,258 - Sama_0449 0.14 +0.8 555,266 - Sama_0449 0.15 -0.5 555,296 + Sama_0449 0.16 +1.8 555,296 + Sama_0449 0.16 -1.2 555,296 + Sama_0449 0.16 +1.5 555,296 + Sama_0449 0.16 +1.4 555,297 - Sama_0449 0.16 +1.1 555,297 - Sama_0449 0.16 -1.6 555,297 - Sama_0449 0.16 -1.2 555,301 + Sama_0449 0.16 +0.9 555,316 + Sama_0449 0.17 +0.7 555,316 + Sama_0449 0.17 -0.8 555,407 + Sama_0449 0.22 +2.3 555,407 + Sama_0449 0.22 +0.6 555,407 + Sama_0449 0.22 +0.8 555,408 - Sama_0449 0.22 -0.6 555,408 - Sama_0449 0.22 +2.5 555,408 - Sama_0449 0.22 -0.8 555,411 + Sama_0449 0.22 +0.0 555,411 + Sama_0449 0.22 -1.5 555,411 + Sama_0449 0.22 -1.0 555,411 + Sama_0449 0.22 +0.6 555,411 + Sama_0449 0.22 -1.2 555,411 + Sama_0449 0.22 -0.1 555,411 + Sama_0449 0.22 +0.0 555,412 - Sama_0449 0.22 +0.2 555,412 - Sama_0449 0.22 +1.8 555,412 - Sama_0449 0.22 +2.0 555,412 - Sama_0449 0.22 +0.2 555,412 - Sama_0449 0.22 -0.6 555,412 - Sama_0449 0.22 +1.8 555,412 - Sama_0449 0.22 +0.2 555,412 - Sama_0449 0.22 +1.5 555,412 - Sama_0449 0.22 +0.2 555,412 - Sama_0449 0.22 +0.6 555,413 + Sama_0449 0.22 +0.4 555,413 + Sama_0449 0.22 -0.1 555,413 + Sama_0449 0.22 +1.7 555,413 + Sama_0449 0.22 +0.7 555,413 + Sama_0449 0.22 +1.1 555,413 + Sama_0449 0.22 +1.8 555,413 + Sama_0449 0.22 -0.0 555,414 - Sama_0449 0.22 -0.8 555,414 - Sama_0449 0.22 +2.6 555,476 + Sama_0449 0.26 -0.5 555,476 + Sama_0449 0.26 +0.8 555,476 + Sama_0449 0.26 -0.8 555,477 - Sama_0449 0.26 -0.2 555,477 - Sama_0449 0.26 -0.5 555,477 - Sama_0449 0.26 +0.2 555,477 - Sama_0449 0.26 +1.8 555,505 - Sama_0449 0.27 +0.7 555,564 - Sama_0449 0.30 -1.0 555,564 - Sama_0449 0.30 +1.3 555,634 - Sama_0449 0.34 -0.2 555,639 + Sama_0449 0.34 -0.1 555,651 + Sama_0449 0.35 +2.0 555,652 - Sama_0449 0.35 +0.5 555,695 + Sama_0449 0.37 +0.9 555,754 + Sama_0449 0.40 +0.5 555,754 + Sama_0449 0.40 -0.6 555,754 + Sama_0449 0.40 +0.0 555,754 + Sama_0449 0.40 +1.5 555,754 + Sama_0449 0.40 +0.7 555,754 + Sama_0449 0.40 +1.1 555,755 - Sama_0449 0.40 +0.8 555,755 - Sama_0449 0.40 +0.6 555,755 - Sama_0449 0.40 +1.6 555,780 + Sama_0449 0.41 +0.1 555,781 - Sama_0449 0.42 +1.2 555,781 - Sama_0449 0.42 +2.6
Or see this region's nucleotide sequence