Experiment: L-Glutamic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0259 and Sama_0260 are separated by 80 nucleotides Sama_0260 and Sama_0261 are separated by 62 nucleotides
Sama_0259: Sama_0259 - argininosuccinate synthase (RefSeq), at 296,823 to 298,046
_0259
Sama_0260: Sama_0260 - argininosuccinate lyase (RefSeq), at 298,127 to 299,497
_0260
Sama_0261: Sama_0261 - AMP-dependent synthetase and ligase (RefSeq), at 299,560 to 301,215
_0261
Position (kb) 298
299
300 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 297.137 kb on + strand, within Sama_0259 at 297.137 kb on + strand, within Sama_0259 at 297.138 kb on - strand, within Sama_0259 at 297.138 kb on - strand, within Sama_0259 at 297.138 kb on - strand, within Sama_0259 at 297.157 kb on + strand, within Sama_0259 at 297.157 kb on + strand, within Sama_0259 at 297.158 kb on - strand, within Sama_0259 at 297.158 kb on - strand, within Sama_0259 at 297.158 kb on - strand, within Sama_0259 at 297.324 kb on + strand, within Sama_0259 at 297.325 kb on - strand, within Sama_0259 at 297.325 kb on - strand, within Sama_0259 at 297.325 kb on - strand, within Sama_0259 at 297.373 kb on - strand, within Sama_0259 at 297.454 kb on + strand, within Sama_0259 at 297.454 kb on + strand, within Sama_0259 at 297.454 kb on + strand, within Sama_0259 at 297.455 kb on - strand, within Sama_0259 at 297.455 kb on - strand, within Sama_0259 at 297.455 kb on - strand, within Sama_0259 at 297.501 kb on + strand, within Sama_0259 at 297.501 kb on + strand, within Sama_0259 at 297.501 kb on + strand, within Sama_0259 at 297.501 kb on + strand, within Sama_0259 at 297.502 kb on - strand, within Sama_0259 at 297.502 kb on - strand, within Sama_0259 at 297.502 kb on - strand, within Sama_0259 at 297.502 kb on - strand, within Sama_0259 at 297.564 kb on + strand, within Sama_0259 at 297.584 kb on + strand, within Sama_0259 at 297.626 kb on + strand, within Sama_0259 at 297.627 kb on - strand, within Sama_0259 at 297.786 kb on + strand, within Sama_0259 at 297.786 kb on + strand, within Sama_0259 at 297.786 kb on + strand, within Sama_0259 at 297.787 kb on - strand, within Sama_0259 at 297.868 kb on + strand, within Sama_0259 at 297.869 kb on - strand, within Sama_0259 at 297.869 kb on - strand, within Sama_0259 at 297.876 kb on - strand, within Sama_0259 at 297.876 kb on - strand, within Sama_0259 at 297.882 kb on + strand, within Sama_0259 at 297.882 kb on + strand, within Sama_0259 at 297.882 kb on + strand, within Sama_0259 at 297.882 kb on + strand, within Sama_0259 at 297.882 kb on + strand, within Sama_0259 at 297.883 kb on - strand, within Sama_0259 at 297.883 kb on - strand, within Sama_0259 at 297.883 kb on - strand, within Sama_0259 at 297.883 kb on - strand, within Sama_0259 at 297.883 kb on - strand, within Sama_0259 at 297.883 kb on - strand, within Sama_0259 at 297.884 kb on + strand, within Sama_0259 at 297.885 kb on - strand, within Sama_0259 at 297.930 kb on + strand at 297.930 kb on + strand at 297.930 kb on + strand at 297.969 kb on + strand at 297.969 kb on + strand at 297.969 kb on + strand at 297.970 kb on - strand at 298.032 kb on + strand at 298.032 kb on + strand at 298.032 kb on + strand at 298.044 kb on + strand at 298.091 kb on + strand at 298.092 kb on - strand at 298.126 kb on + strand at 298.126 kb on + strand at 298.127 kb on - strand at 298.205 kb on + strand at 298.427 kb on - strand, within Sama_0260 at 298.482 kb on + strand, within Sama_0260 at 298.482 kb on + strand, within Sama_0260 at 298.482 kb on + strand, within Sama_0260 at 298.483 kb on - strand, within Sama_0260 at 298.483 kb on - strand, within Sama_0260 at 298.483 kb on - strand, within Sama_0260 at 298.483 kb on - strand, within Sama_0260 at 298.483 kb on - strand, within Sama_0260 at 298.522 kb on + strand, within Sama_0260 at 298.522 kb on + strand, within Sama_0260 at 298.523 kb on - strand, within Sama_0260 at 298.523 kb on - strand, within Sama_0260 at 298.587 kb on - strand, within Sama_0260 at 298.640 kb on + strand, within Sama_0260 at 298.640 kb on + strand, within Sama_0260 at 298.640 kb on + strand, within Sama_0260 at 298.640 kb on + strand, within Sama_0260 at 298.640 kb on + strand, within Sama_0260 at 298.641 kb on - strand, within Sama_0260 at 298.641 kb on - strand, within Sama_0260 at 298.641 kb on - strand, within Sama_0260 at 298.641 kb on - strand, within Sama_0260 at 298.641 kb on - strand, within Sama_0260 at 298.641 kb on - strand, within Sama_0260 at 298.739 kb on + strand, within Sama_0260 at 298.739 kb on + strand, within Sama_0260 at 298.739 kb on + strand, within Sama_0260 at 298.739 kb on + strand, within Sama_0260 at 298.739 kb on + strand, within Sama_0260 at 298.739 kb on + strand, within Sama_0260 at 298.739 kb on + strand, within Sama_0260 at 298.739 kb on + strand, within Sama_0260 at 298.740 kb on - strand, within Sama_0260 at 298.740 kb on - strand, within Sama_0260 at 298.740 kb on - strand, within Sama_0260 at 298.740 kb on - strand, within Sama_0260 at 298.740 kb on - strand, within Sama_0260 at 298.740 kb on - strand, within Sama_0260 at 298.740 kb on - strand, within Sama_0260 at 298.740 kb on - strand, within Sama_0260 at 298.740 kb on - strand, within Sama_0260 at 298.740 kb on - strand, within Sama_0260 at 298.861 kb on + strand, within Sama_0260 at 298.862 kb on - strand, within Sama_0260 at 298.862 kb on - strand, within Sama_0260 at 298.862 kb on - strand, within Sama_0260 at 298.862 kb on - strand, within Sama_0260 at 299.025 kb on - strand, within Sama_0260 at 299.075 kb on + strand, within Sama_0260 at 299.147 kb on - strand, within Sama_0260 at 299.147 kb on - strand, within Sama_0260 at 299.178 kb on + strand, within Sama_0260 at 299.178 kb on + strand, within Sama_0260 at 299.243 kb on + strand, within Sama_0260 at 299.243 kb on + strand, within Sama_0260 at 299.244 kb on - strand, within Sama_0260 at 299.561 kb on + strand at 299.561 kb on + strand at 299.562 kb on + strand at 299.605 kb on + strand at 299.605 kb on + strand at 299.605 kb on + strand at 299.605 kb on + strand at 299.605 kb on + strand at 299.605 kb on + strand at 299.605 kb on + strand at 299.605 kb on + strand at 299.605 kb on + strand at 299.605 kb on + strand at 299.605 kb on + strand at 299.606 kb on - strand at 299.606 kb on - strand at 299.618 kb on + strand at 299.618 kb on + strand at 299.618 kb on + strand at 299.618 kb on + strand at 299.619 kb on - strand at 299.619 kb on - strand at 299.619 kb on - strand at 299.698 kb on + strand at 299.699 kb on - strand at 299.902 kb on - strand, within Sama_0261 at 299.918 kb on + strand, within Sama_0261 at 299.918 kb on + strand, within Sama_0261 at 299.918 kb on + strand, within Sama_0261 at 299.918 kb on + strand, within Sama_0261 at 299.918 kb on + strand, within Sama_0261 at 299.918 kb on + strand, within Sama_0261 at 299.919 kb on - strand, within Sama_0261 at 299.919 kb on - strand, within Sama_0261 at 299.919 kb on - strand, within Sama_0261 at 299.919 kb on - strand, within Sama_0261 at 299.919 kb on - strand, within Sama_0261 at 299.919 kb on - strand, within Sama_0261 at 299.919 kb on - strand, within Sama_0261 at 299.919 kb on - strand, within Sama_0261 at 299.919 kb on - strand, within Sama_0261 at 299.937 kb on + strand, within Sama_0261 at 299.937 kb on + strand, within Sama_0261 at 299.938 kb on - strand, within Sama_0261 at 300.059 kb on + strand, within Sama_0261 at 300.059 kb on + strand, within Sama_0261 at 300.060 kb on - strand, within Sama_0261 at 300.060 kb on - strand, within Sama_0261 at 300.062 kb on + strand, within Sama_0261 at 300.176 kb on + strand, within Sama_0261 at 300.176 kb on + strand, within Sama_0261 at 300.191 kb on + strand, within Sama_0261 at 300.192 kb on - strand, within Sama_0261 at 300.228 kb on + strand, within Sama_0261 at 300.228 kb on + strand, within Sama_0261 at 300.229 kb on - strand, within Sama_0261 at 300.238 kb on + strand, within Sama_0261 at 300.238 kb on + strand, within Sama_0261 at 300.239 kb on - strand, within Sama_0261 at 300.306 kb on + strand, within Sama_0261 at 300.306 kb on + strand, within Sama_0261 at 300.307 kb on - strand, within Sama_0261 at 300.307 kb on - strand, within Sama_0261 at 300.340 kb on + strand, within Sama_0261 at 300.341 kb on - strand, within Sama_0261 at 300.347 kb on + strand, within Sama_0261 at 300.347 kb on + strand, within Sama_0261 at 300.347 kb on + strand, within Sama_0261 at 300.347 kb on + strand, within Sama_0261 at 300.347 kb on + strand, within Sama_0261 at 300.347 kb on + strand, within Sama_0261 at 300.348 kb on - strand, within Sama_0261 at 300.348 kb on - strand, within Sama_0261 at 300.348 kb on - strand, within Sama_0261 at 300.348 kb on - strand, within Sama_0261 at 300.348 kb on - strand, within Sama_0261 at 300.405 kb on + strand, within Sama_0261 at 300.451 kb on + strand, within Sama_0261 at 300.451 kb on + strand, within Sama_0261 at 300.451 kb on + strand, within Sama_0261 at 300.451 kb on + strand, within Sama_0261 at 300.451 kb on + strand, within Sama_0261 at 300.451 kb on + strand, within Sama_0261 at 300.452 kb on - strand, within Sama_0261 at 300.452 kb on - strand, within Sama_0261 at 300.452 kb on - strand, within Sama_0261 at 300.452 kb on - strand, within Sama_0261 at 300.489 kb on + strand, within Sama_0261 at 300.490 kb on - strand, within Sama_0261
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic remove 297,137 + Sama_0259 0.26 -3.3 297,137 + Sama_0259 0.26 -2.6 297,138 - Sama_0259 0.26 +0.4 297,138 - Sama_0259 0.26 -3.3 297,138 - Sama_0259 0.26 -1.2 297,157 + Sama_0259 0.27 -1.5 297,157 + Sama_0259 0.27 -0.2 297,158 - Sama_0259 0.27 -1.0 297,158 - Sama_0259 0.27 -0.4 297,158 - Sama_0259 0.27 -2.6 297,324 + Sama_0259 0.41 -1.4 297,325 - Sama_0259 0.41 -2.3 297,325 - Sama_0259 0.41 -3.3 297,325 - Sama_0259 0.41 -1.5 297,373 - Sama_0259 0.45 -2.0 297,454 + Sama_0259 0.52 -2.9 297,454 + Sama_0259 0.52 -2.4 297,454 + Sama_0259 0.52 -0.6 297,455 - Sama_0259 0.52 -2.1 297,455 - Sama_0259 0.52 -2.0 297,455 - Sama_0259 0.52 -3.2 297,501 + Sama_0259 0.55 -2.7 297,501 + Sama_0259 0.55 -1.2 297,501 + Sama_0259 0.55 -1.0 297,501 + Sama_0259 0.55 -1.2 297,502 - Sama_0259 0.55 -3.6 297,502 - Sama_0259 0.55 -3.7 297,502 - Sama_0259 0.55 -0.9 297,502 - Sama_0259 0.55 -2.1 297,564 + Sama_0259 0.61 -0.7 297,584 + Sama_0259 0.62 -0.9 297,626 + Sama_0259 0.66 -2.1 297,627 - Sama_0259 0.66 -1.4 297,786 + Sama_0259 0.79 -0.9 297,786 + Sama_0259 0.79 -0.9 297,786 + Sama_0259 0.79 -2.6 297,787 - Sama_0259 0.79 -3.5 297,868 + Sama_0259 0.85 -1.0 297,869 - Sama_0259 0.85 -0.6 297,869 - Sama_0259 0.85 -3.1 297,876 - Sama_0259 0.86 -1.7 297,876 - Sama_0259 0.86 -1.9 297,882 + Sama_0259 0.87 -2.4 297,882 + Sama_0259 0.87 -0.9 297,882 + Sama_0259 0.87 -3.0 297,882 + Sama_0259 0.87 -2.1 297,882 + Sama_0259 0.87 -0.6 297,883 - Sama_0259 0.87 -3.8 297,883 - Sama_0259 0.87 -2.6 297,883 - Sama_0259 0.87 -2.2 297,883 - Sama_0259 0.87 -1.0 297,883 - Sama_0259 0.87 -2.4 297,883 - Sama_0259 0.87 -3.2 297,884 + Sama_0259 0.87 -2.5 297,885 - Sama_0259 0.87 -1.2 297,930 + +2.0 297,930 + -1.7 297,930 + +0.4 297,969 + -1.2 297,969 + -3.8 297,969 + +0.1 297,970 - -1.6 298,032 + -1.3 298,032 + -1.0 298,032 + -0.9 298,044 + -1.2 298,091 + -0.8 298,092 - -0.9 298,126 + -1.4 298,126 + -3.4 298,127 - -3.7 298,205 + -3.1 298,427 - Sama_0260 0.22 -2.6 298,482 + Sama_0260 0.26 -2.3 298,482 + Sama_0260 0.26 -2.6 298,482 + Sama_0260 0.26 +0.9 298,483 - Sama_0260 0.26 -1.6 298,483 - Sama_0260 0.26 +0.4 298,483 - Sama_0260 0.26 -2.5 298,483 - Sama_0260 0.26 -2.4 298,483 - Sama_0260 0.26 -0.1 298,522 + Sama_0260 0.29 -2.3 298,522 + Sama_0260 0.29 +0.5 298,523 - Sama_0260 0.29 -0.9 298,523 - Sama_0260 0.29 -3.7 298,587 - Sama_0260 0.34 -2.3 298,640 + Sama_0260 0.37 -2.8 298,640 + Sama_0260 0.37 -2.4 298,640 + Sama_0260 0.37 -2.1 298,640 + Sama_0260 0.37 -2.1 298,640 + Sama_0260 0.37 -2.8 298,641 - Sama_0260 0.37 -1.5 298,641 - Sama_0260 0.37 -0.8 298,641 - Sama_0260 0.37 -1.1 298,641 - Sama_0260 0.37 -1.2 298,641 - Sama_0260 0.37 -1.1 298,641 - Sama_0260 0.37 -0.6 298,739 + Sama_0260 0.45 -0.4 298,739 + Sama_0260 0.45 -1.4 298,739 + Sama_0260 0.45 -2.4 298,739 + Sama_0260 0.45 -3.2 298,739 + Sama_0260 0.45 -2.1 298,739 + Sama_0260 0.45 -2.4 298,739 + Sama_0260 0.45 -2.0 298,739 + Sama_0260 0.45 -2.6 298,740 - Sama_0260 0.45 -3.1 298,740 - Sama_0260 0.45 -0.9 298,740 - Sama_0260 0.45 -0.9 298,740 - Sama_0260 0.45 -1.4 298,740 - Sama_0260 0.45 +0.9 298,740 - Sama_0260 0.45 -2.2 298,740 - Sama_0260 0.45 -2.9 298,740 - Sama_0260 0.45 -1.4 298,740 - Sama_0260 0.45 -1.8 298,740 - Sama_0260 0.45 -3.1 298,861 + Sama_0260 0.54 -3.6 298,862 - Sama_0260 0.54 -0.6 298,862 - Sama_0260 0.54 -2.8 298,862 - Sama_0260 0.54 -0.1 298,862 - Sama_0260 0.54 -1.8 299,025 - Sama_0260 0.65 -3.0 299,075 + Sama_0260 0.69 -2.4 299,147 - Sama_0260 0.74 -1.1 299,147 - Sama_0260 0.74 -0.6 299,178 + Sama_0260 0.77 -1.4 299,178 + Sama_0260 0.77 +0.9 299,243 + Sama_0260 0.81 -1.5 299,243 + Sama_0260 0.81 -0.6 299,244 - Sama_0260 0.81 +0.9 299,561 + +0.2 299,561 + -0.1 299,562 + -0.2 299,605 + +1.1 299,605 + +1.0 299,605 + +0.8 299,605 + -0.3 299,605 + -0.6 299,605 + +0.0 299,605 + +1.4 299,605 + -0.6 299,605 + +0.1 299,605 + -0.5 299,605 + +0.4 299,606 - +1.0 299,606 - +0.1 299,618 + -0.8 299,618 + -0.4 299,618 + +0.1 299,618 + -1.1 299,619 - -0.2 299,619 - -0.7 299,619 - +0.9 299,698 + +0.5 299,699 - +0.5 299,902 - Sama_0261 0.21 +1.9 299,918 + Sama_0261 0.22 -0.1 299,918 + Sama_0261 0.22 +0.3 299,918 + Sama_0261 0.22 +0.6 299,918 + Sama_0261 0.22 +0.8 299,918 + Sama_0261 0.22 -0.8 299,918 + Sama_0261 0.22 -0.6 299,919 - Sama_0261 0.22 -0.8 299,919 - Sama_0261 0.22 -0.4 299,919 - Sama_0261 0.22 +1.5 299,919 - Sama_0261 0.22 +0.8 299,919 - Sama_0261 0.22 -1.8 299,919 - Sama_0261 0.22 +0.2 299,919 - Sama_0261 0.22 +0.7 299,919 - Sama_0261 0.22 +1.4 299,919 - Sama_0261 0.22 -0.0 299,937 + Sama_0261 0.23 +1.4 299,937 + Sama_0261 0.23 +1.3 299,938 - Sama_0261 0.23 +1.4 300,059 + Sama_0261 0.30 -0.8 300,059 + Sama_0261 0.30 -1.0 300,060 - Sama_0261 0.30 -0.1 300,060 - Sama_0261 0.30 -0.3 300,062 + Sama_0261 0.30 +0.0 300,176 + Sama_0261 0.37 +1.9 300,176 + Sama_0261 0.37 +0.6 300,191 + Sama_0261 0.38 +0.4 300,192 - Sama_0261 0.38 +0.2 300,228 + Sama_0261 0.40 -0.1 300,228 + Sama_0261 0.40 -1.1 300,229 - Sama_0261 0.40 -0.4 300,238 + Sama_0261 0.41 +0.4 300,238 + Sama_0261 0.41 -0.3 300,239 - Sama_0261 0.41 +1.4 300,306 + Sama_0261 0.45 -0.9 300,306 + Sama_0261 0.45 +0.4 300,307 - Sama_0261 0.45 -1.4 300,307 - Sama_0261 0.45 -0.1 300,340 + Sama_0261 0.47 -0.6 300,341 - Sama_0261 0.47 -2.5 300,347 + Sama_0261 0.48 -0.6 300,347 + Sama_0261 0.48 +0.4 300,347 + Sama_0261 0.48 +0.4 300,347 + Sama_0261 0.48 +0.5 300,347 + Sama_0261 0.48 +0.5 300,347 + Sama_0261 0.48 +2.4 300,348 - Sama_0261 0.48 -1.5 300,348 - Sama_0261 0.48 +0.2 300,348 - Sama_0261 0.48 +0.9 300,348 - Sama_0261 0.48 +1.4 300,348 - Sama_0261 0.48 -1.1 300,405 + Sama_0261 0.51 +0.8 300,451 + Sama_0261 0.54 -1.1 300,451 + Sama_0261 0.54 -1.9 300,451 + Sama_0261 0.54 +1.4 300,451 + Sama_0261 0.54 +3.5 300,451 + Sama_0261 0.54 +1.5 300,451 + Sama_0261 0.54 +0.0 300,452 - Sama_0261 0.54 -0.2 300,452 - Sama_0261 0.54 -1.4 300,452 - Sama_0261 0.54 -0.1 300,452 - Sama_0261 0.54 +0.1 300,489 + Sama_0261 0.56 -1.4 300,490 - Sama_0261 0.56 -1.6
Or see this region's nucleotide sequence