Strain Fitness in Shewanella oneidensis MR-1 around SO_A0133

Experiment: Chloride 350 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloride 350 mM
116,302	+		SO_A0131	0.47	-0.3
116,303	+		SO_A0131	0.47	+0.3
116,304	-		SO_A0131	0.48	-0.3
116,310	-		SO_A0131	0.49	+0.4
116,311	-		SO_A0131	0.49	+0.0
116,311	-		SO_A0131	0.49	-0.0
116,316	-		SO_A0131	0.51	-0.3
116,328	+		SO_A0131	0.54	-0.1
116,335	+		SO_A0131	0.55	-0.1
116,335	+		SO_A0131	0.55	-1.5
116,341	+		SO_A0131	0.57	+1.0
116,342	+		SO_A0131	0.57	+0.8
116,342	+		SO_A0131	0.57	-0.2
116,342	+		SO_A0131	0.57	-0.5
116,342	+		SO_A0131	0.57	-0.1
116,350	-		SO_A0131	0.59	+0.5
116,352	-		SO_A0131	0.59	+0.3
116,352	-		SO_A0131	0.59	+0.8
116,357	-		SO_A0131	0.61	+0.2
116,362	-		SO_A0131	0.62	+0.1
116,374	-		SO_A0131	0.65	+0.6
116,376	-		SO_A0131	0.65	+0.1
116,376	-		SO_A0131	0.65	-0.6
116,381	-		SO_A0131	0.66	-0.2
116,418	+		SO_A0131	0.75	-0.1
116,418	+		SO_A0131	0.75	-0.4
116,418	+		SO_A0131	0.75	+0.4
116,426	+		SO_A0131	0.77	+0.2
116,426	-		SO_A0131	0.77	-0.1
116,449	+		SO_A0131	0.83	-1.2
116,455	+		SO_A0131	0.84	+1.5
116,455	+		SO_A0131	0.84	-0.1
116,455	+		SO_A0131	0.84	-0.2
116,455	+		SO_A0131	0.84	-0.1
116,455	+		SO_A0131	0.84	-0.3
116,458	-		SO_A0131	0.85	-1.0
116,462	+		SO_A0131	0.86	-0.0
116,463	+		SO_A0131	0.86	-0.0
116,463	-		SO_A0131	0.86	-0.4
116,463	-		SO_A0131	0.86	-0.2
116,471	-		SO_A0131	0.88	+0.4
116,471	-		SO_A0131	0.88	-0.2
116,486	+				-0.2
116,486	+				+0.4
116,486	+				-0.4
116,494	-				+0.1
116,494	-				-0.8
116,494	-				+0.1
116,494	-				+0.0
116,494	-				+0.2
116,494	-				-0.1
116,541	+				+0.1
116,541	+				-0.4
116,541	+				+0.1
116,541	+				-0.4
116,541	+				-0.6
116,549	-				+0.1
116,549	-				-0.2
116,565	+		SOA0132	0.11	+0.3
116,567	-		SOA0132	0.11	-1.0
116,570	+		SOA0132	0.12	+0.8
116,573	-		SOA0132	0.13	+0.1
116,578	+		SOA0132	0.14	-0.3
116,578	-		SOA0132	0.14	-0.1
116,586	-		SOA0132	0.15	+0.9
116,591	+		SOA0132	0.17	-0.6
116,591	+		SOA0132	0.17	+0.2
116,612	-		SOA0132	0.21	-0.3
116,614	+		SOA0132	0.22	-0.4
116,637	+		SOA0132	0.27	+1.2
116,641	-		SOA0132	0.27	-0.0
116,647	+		SOA0132	0.29	+0.8
116,647	+		SOA0132	0.29	+0.1
116,647	+		SOA0132	0.29	+0.2
116,647	+		SOA0132	0.29	-0.6
116,647	+		SOA0132	0.29	+0.1
116,647	+		SOA0132	0.29	+0.6
116,647	+		SOA0132	0.29	-0.8
116,647	+		SOA0132	0.29	+0.4
116,647	+		SOA0132	0.29	-0.2
116,647	+		SOA0132	0.29	+0.3
116,647	+		SOA0132	0.29	-0.6
116,647	+		SOA0132	0.29	+0.2
116,647	+		SOA0132	0.29	+0.1
116,647	+		SOA0132	0.29	+0.1
116,647	+		SOA0132	0.29	-0.2
116,647	+		SOA0132	0.29	+0.0
116,647	+		SOA0132	0.29	+0.8
116,647	+		SOA0132	0.29	+0.5
116,647	+		SOA0132	0.29	+0.2
116,647	+		SOA0132	0.29	-0.1
116,647	+		SOA0132	0.29	+0.5
116,647	+		SOA0132	0.29	-0.3
116,647	+		SOA0132	0.29	-0.1
116,647	+		SOA0132	0.29	-0.3
116,647	+		SOA0132	0.29	-0.3
116,647	+		SOA0132	0.29	-0.8
116,647	+		SOA0132	0.29	-0.0
116,647	+		SOA0132	0.29	-0.0
116,647	+		SOA0132	0.29	+0.0
116,647	+		SOA0132	0.29	+0.2
116,647	+		SOA0132	0.29	-0.1
116,647	+		SOA0132	0.29	-0.2
116,647	+		SOA0132	0.29	-0.1
116,647	+		SOA0132	0.29	+0.2
116,647	+		SOA0132	0.29	+0.3
116,647	+		SOA0132	0.29	+0.0
116,647	+		SOA0132	0.29	+0.0
116,647	+		SOA0132	0.29	-0.0
116,647	+		SOA0132	0.29	+0.2
116,647	+		SOA0132	0.29	+0.5
116,647	+		SOA0132	0.29	+0.3
116,647	+		SOA0132	0.29	+0.2
116,655	-		SOA0132	0.31	-1.3
116,655	-		SOA0132	0.31	-0.3
116,655	-		SOA0132	0.31	-0.2
116,655	-		SOA0132	0.31	+0.2
116,655	-		SOA0132	0.31	+0.0
116,655	-		SOA0132	0.31	+0.1
116,655	-		SOA0132	0.31	-0.3
116,655	-		SOA0132	0.31	+0.8
116,655	-		SOA0132	0.31	-0.4
116,655	-		SOA0132	0.31	-1.0
116,655	-		SOA0132	0.31	+0.1
116,655	-		SOA0132	0.31	+0.0
116,655	-		SOA0132	0.31	+1.2
116,655	-		SOA0132	0.31	+0.3
116,655	-		SOA0132	0.31	-0.6
116,655	-		SOA0132	0.31	-0.1
116,655	-		SOA0132	0.31	-0.1
116,655	-		SOA0132	0.31	-0.2
116,655	-		SOA0132	0.31	-0.3
116,655	-		SOA0132	0.31	-0.1
116,655	-		SOA0132	0.31	-0.5
116,655	-		SOA0132	0.31	+0.3
116,655	-		SOA0132	0.31	+0.4
116,655	-		SOA0132	0.31	+0.2
116,655	-		SOA0132	0.31	-0.0
116,655	-		SOA0132	0.31	+0.1
116,655	-		SOA0132	0.31	-0.3
116,655	-		SOA0132	0.31	-0.3
116,655	-		SOA0132	0.31	-1.1
116,655	-		SOA0132	0.31	-0.0
116,655	-		SOA0132	0.31	+0.3
116,655	-		SOA0132	0.31	-0.4
116,655	-		SOA0132	0.31	+2.4
116,655	-		SOA0132	0.31	-1.2
116,655	-		SOA0132	0.31	+0.0
116,655	-		SOA0132	0.31	+0.4
116,655	-		SOA0132	0.31	-0.4
116,697	+		SOA0132	0.40	-0.7
116,697	+		SOA0132	0.40	-0.1
116,697	+		SOA0132	0.40	+0.1
116,697	+		SOA0132	0.40	+0.1
116,704	+		SOA0132	0.41	-0.1
116,704	+		SOA0132	0.41	+0.1
116,704	+		SOA0132	0.41	-0.8
116,704	+		SOA0132	0.41	-0.5
116,704	+		SOA0132	0.41	+1.0
116,705	+		SOA0132	0.41	+1.5
116,705	+		SOA0132	0.41	-0.3
116,705	-		SOA0132	0.41	+0.3
116,705	-		SOA0132	0.41	+0.1
116,706	-		SOA0132	0.42	-0.4
116,711	+		SOA0132	0.43	+0.2
116,711	+		SOA0132	0.43	-0.7
116,711	+		SOA0132	0.43	-0.1
116,711	+		SOA0132	0.43	-0.1
116,711	+		SOA0132	0.43	+0.1
116,711	+		SOA0132	0.43	-0.3
116,711	+		SOA0132	0.43	-0.2
116,711	+		SOA0132	0.43	+0.3
116,711	+		SOA0132	0.43	-0.5
116,711	+		SOA0132	0.43	+0.2
116,711	+		SOA0132	0.43	+0.4
116,711	+		SOA0132	0.43	+0.3
116,711	+		SOA0132	0.43	-0.3
116,711	+		SOA0132	0.43	-0.7
116,711	+		SOA0132	0.43	-0.5
116,711	+		SOA0132	0.43	+0.5
116,711	+		SOA0132	0.43	-0.1
116,711	+		SOA0132	0.43	+0.1
116,711	+		SOA0132	0.43	-0.4
116,711	+		SOA0132	0.43	-0.7
116,711	+		SOA0132	0.43	-0.7
116,711	+		SOA0132	0.43	+0.0
116,711	+		SOA0132	0.43	-0.5
116,711	+		SOA0132	0.43	-0.1
116,711	+		SOA0132	0.43	-0.2
116,711	+		SOA0132	0.43	-0.1
116,711	+		SOA0132	0.43	+0.3
116,711	+		SOA0132	0.43	-0.6
116,711	+		SOA0132	0.43	-0.7
116,711	+		SOA0132	0.43	+0.1
116,711	+		SOA0132	0.43	-0.6
116,711	+		SOA0132	0.43	-0.3
116,711	+		SOA0132	0.43	-0.1
116,711	+		SOA0132	0.43	-1.0
116,711	+		SOA0132	0.43	+1.5
116,711	+		SOA0132	0.43	+0.1
116,711	+		SOA0132	0.43	-0.7
116,711	+		SOA0132	0.43	-0.5
116,711	+		SOA0132	0.43	+0.4
116,711	+		SOA0132	0.43	-0.0
116,711	+		SOA0132	0.43	-1.2
116,711	+		SOA0132	0.43	+0.1
116,711	+		SOA0132	0.43	-0.1
116,711	+		SOA0132	0.43	+0.1
116,711	+		SOA0132	0.43	-0.2
116,711	+		SOA0132	0.43	-0.9
116,711	+		SOA0132	0.43	+0.8
116,711	+		SOA0132	0.43	-0.1
116,711	+		SOA0132	0.43	-0.2
116,711	+		SOA0132	0.43	-0.5
116,711	+		SOA0132	0.43	+0.4
116,711	+		SOA0132	0.43	+0.0
116,711	+		SOA0132	0.43	-0.1
116,711	+		SOA0132	0.43	+1.0
116,711	+		SOA0132	0.43	+0.8
116,711	+		SOA0132	0.43	+0.1
116,711	+		SOA0132	0.43	+0.3
116,711	+		SOA0132	0.43	-0.0
116,711	+		SOA0132	0.43	-0.3
116,711	+		SOA0132	0.43	+0.1
116,711	+		SOA0132	0.43	-0.7
116,711	+		SOA0132	0.43	-1.1
116,711	+		SOA0132	0.43	-1.0
116,711	+		SOA0132	0.43	+0.1
116,711	+		SOA0132	0.43	+0.6
116,711	+		SOA0132	0.43	+0.0
116,711	+		SOA0132	0.43	+0.3
116,711	+		SOA0132	0.43	-0.5
116,711	+		SOA0132	0.43	-0.5
116,711	+		SOA0132	0.43	-0.2
116,711	+		SOA0132	0.43	+0.1
116,711	+		SOA0132	0.43	+0.3
116,711	+		SOA0132	0.43	-0.5
116,711	+		SOA0132	0.43	-0.8
116,711	+		SOA0132	0.43	+0.1
116,711	+		SOA0132	0.43	+0.3
116,711	+		SOA0132	0.43	-0.1
116,711	+		SOA0132	0.43	-0.3
116,711	+		SOA0132	0.43	+0.0
116,711	+		SOA0132	0.43	+0.3
116,711	+		SOA0132	0.43	-0.5
116,711	+		SOA0132	0.43	+0.1
116,711	+		SOA0132	0.43	-2.9
116,711	+		SOA0132	0.43	-0.3
116,711	+		SOA0132	0.43	+0.1
116,711	+		SOA0132	0.43	+0.1
116,711	+		SOA0132	0.43	-0.5
116,711	+		SOA0132	0.43	-0.0
116,711	+		SOA0132	0.43	+0.4
116,711	+		SOA0132	0.43	+0.3
116,711	+		SOA0132	0.43	-0.4
116,711	+		SOA0132	0.43	+0.0
116,711	+		SOA0132	0.43	+0.9
116,711	+		SOA0132	0.43	+0.2
116,712	+		SOA0132	0.43	+0.2
116,712	+		SOA0132	0.43	-0.6
116,712	+		SOA0132	0.43	+0.2
116,712	+		SOA0132	0.43	+0.3
116,712	+		SOA0132	0.43	-0.9
116,712	+		SOA0132	0.43	+0.1
116,712	+		SOA0132	0.43	-0.2
116,712	-		SOA0132	0.43	-0.1
116,712	-		SOA0132	0.43	-0.1
116,712	-		SOA0132	0.43	-0.2
116,712	-		SOA0132	0.43	-0.2
116,712	-		SOA0132	0.43	+0.0
116,712	-		SOA0132	0.43	-0.3
116,712	-		SOA0132	0.43	-0.3
116,712	-		SOA0132	0.43	-1.1
116,712	-		SOA0132	0.43	-0.1
116,712	-		SOA0132	0.43	-0.4
116,712	-		SOA0132	0.43	-0.5
116,712	-		SOA0132	0.43	-0.9
116,712	-		SOA0132	0.43	-0.1
116,712	-		SOA0132	0.43	-0.1
116,712	-		SOA0132	0.43	+0.4
116,713	-		SOA0132	0.43	+0.4
116,713	-		SOA0132	0.43	-0.1
116,713	-		SOA0132	0.43	+0.5
116,713	-		SOA0132	0.43	-0.1
116,714	+		SOA0132	0.43	+0.0
116,719	-		SOA0132	0.44	+0.5
116,719	-		SOA0132	0.44	+0.4
116,719	-		SOA0132	0.44	+0.9
116,719	-		SOA0132	0.44	+0.4
116,719	-		SOA0132	0.44	+0.0
116,719	-		SOA0132	0.44	+0.3
116,719	-		SOA0132	0.44	+0.8
116,719	-		SOA0132	0.44	-0.1
116,719	-		SOA0132	0.44	-0.3
116,719	-		SOA0132	0.44	-0.2
116,719	-		SOA0132	0.44	+0.4
116,719	-		SOA0132	0.44	+0.4
116,719	-		SOA0132	0.44	-0.1
116,719	-		SOA0132	0.44	+1.1
116,719	-		SOA0132	0.44	-0.1
116,719	-		SOA0132	0.44	-0.3
116,719	-		SOA0132	0.44	-0.3
116,719	-		SOA0132	0.44	-0.3
116,719	-		SOA0132	0.44	-0.1
116,719	-		SOA0132	0.44	-0.7
116,719	-		SOA0132	0.44	+0.1
116,719	-		SOA0132	0.44	-0.1
116,719	-		SOA0132	0.44	+0.4
116,719	-		SOA0132	0.44	-0.0
116,719	-		SOA0132	0.44	-0.7
116,719	-		SOA0132	0.44	-0.0
116,719	-		SOA0132	0.44	+0.3
116,719	-		SOA0132	0.44	-0.2
116,719	-		SOA0132	0.44	-0.2
116,719	-		SOA0132	0.44	-0.3
116,719	-		SOA0132	0.44	-0.3
116,719	-		SOA0132	0.44	-0.4
116,719	-		SOA0132	0.44	-0.1
116,719	-		SOA0132	0.44	-0.4
116,719	-		SOA0132	0.44	+0.1
116,719	-		SOA0132	0.44	+1.1
116,719	-		SOA0132	0.44	-0.0
116,719	-		SOA0132	0.44	+0.2
116,719	-		SOA0132	0.44	+0.6
116,719	-		SOA0132	0.44	+0.5
116,719	-		SOA0132	0.44	+0.2
116,719	-		SOA0132	0.44	-0.1
116,719	-		SOA0132	0.44	+0.4
116,720	-		SOA0132	0.45	-0.1
116,720	-		SOA0132	0.45	-0.5
116,720	-		SOA0132	0.45	-0.4
116,720	-		SOA0132	0.45	-0.1
116,720	-		SOA0132	0.45	-0.5
116,720	-		SOA0132	0.45	-0.2
116,720	-		SOA0132	0.45	-1.1
116,720	-		SOA0132	0.45	+0.1
116,720	-		SOA0132	0.45	+0.4
116,720	-		SOA0132	0.45	-0.7
116,726	-		SOA0132	0.46	+0.2
116,802	+		SOA0132	0.63	-0.0
116,803	+		SOA0132	0.63	+0.1
116,835	+		SOA0132	0.70	+0.3
116,863	-		SOA0132	0.76	-0.1
116,900	+		SOA0132	0.84	+0.1
116,900	+		SOA0132	0.84	-0.0
116,908	-		SOA0132	0.86	-0.4
116,908	-		SOA0132	0.86	-0.3
116,908	-		SOA0132	0.86	+0.2
116,908	-		SOA0132	0.86	+0.0
116,908	-		SOA0132	0.86	+0.1
116,969	+				+0.0
116,969	-				+1.4
116,970	-				+0.1
116,971	-				+0.5
116,995	+				+0.2
116,995	+				-0.1
116,995	+				+0.4
117,003	-				+0.1
117,003	-				+0.1
117,003	-				-0.1
117,016	+				+0.1
117,029	-				+0.4
117,033	+				-0.6
117,033	+				+0.0
117,033	+				-0.3
117,033	+				+0.1
117,038	+				+0.5
117,039	-				-1.4
117,040	+				-0.5
117,040	+				+0.6
117,040	+				-0.6
117,040	+				-0.1
117,040	+				+0.1
117,040	+				-0.5
117,040	+				+0.6
117,041	-				+0.5
117,041	-				+0.4
117,041	-				+0.1
117,045	+				+0.3
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