Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0699

Experiment: D-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0698 and Psest_0699 are separated by 138 nucleotidesPsest_0699 and Psest_0700 overlap by 13 nucleotides Psest_0698: Psest_0698 - replicative DNA helicase, at 761,911 to 763,305 _0698 Psest_0699: Psest_0699 - alanine racemase, at 763,444 to 764,520 _0699 Psest_0700: Psest_0700 - diguanylate cyclase (GGDEF) domain, at 764,508 to 766,370 _0700 Position (kb) 763 764 765Strain fitness (log2 ratio) -1 0 1 2 3at 763.286 kb on - strandat 763.286 kb on - strandat 763.286 kb on - strandat 763.286 kb on - strandat 763.405 kb on + strandat 763.405 kb on + strandat 763.406 kb on - strandat 763.406 kb on - strandat 763.429 kb on + strandat 764.581 kb on + strandat 764.605 kb on + strandat 764.605 kb on + strandat 764.605 kb on + strandat 764.605 kb on + strandat 764.605 kb on + strandat 764.606 kb on - strandat 764.606 kb on - strandat 764.606 kb on - strandat 764.606 kb on - strandat 765.202 kb on - strand, within Psest_0700at 765.202 kb on - strand, within Psest_0700at 765.361 kb on + strand, within Psest_0700at 765.362 kb on - strand, within Psest_0700at 765.362 kb on - strand, within Psest_0700at 765.380 kb on - strand, within Psest_0700at 765.380 kb on - strand, within Psest_0700at 765.380 kb on - strand, within Psest_0700at 765.505 kb on + strand, within Psest_0700at 765.505 kb on + strand, within Psest_0700at 765.505 kb on + strand, within Psest_0700at 765.505 kb on + strand, within Psest_0700at 765.506 kb on - strand, within Psest_0700at 765.506 kb on - strand, within Psest_0700

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
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763,286 - +0.6
763,286 - +1.8
763,286 - +0.7
763,286 - +0.6
763,405 + -0.2
763,405 + -0.0
763,406 - +0.3
763,406 - +0.5
763,429 + +1.2
764,581 + -0.2
764,605 + +0.1
764,605 + -0.4
764,605 + -1.3
764,605 + -0.6
764,605 + +0.6
764,606 - +0.1
764,606 - +0.5
764,606 - +2.8
764,606 - -0.1
765,202 - Psest_0700 0.37 -0.3
765,202 - Psest_0700 0.37 -0.4
765,361 + Psest_0700 0.46 +0.8
765,362 - Psest_0700 0.46 +0.7
765,362 - Psest_0700 0.46 +0.8
765,380 - Psest_0700 0.47 +0.5
765,380 - Psest_0700 0.47 -0.1
765,380 - Psest_0700 0.47 -0.1
765,505 + Psest_0700 0.54 +0.5
765,505 + Psest_0700 0.54 +1.0
765,505 + Psest_0700 0.54 -0.5
765,505 + Psest_0700 0.54 +1.1
765,506 - Psest_0700 0.54 +0.3
765,506 - Psest_0700 0.54 +1.0

Or see this region's nucleotide sequence