Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0633 and Psest_0634 overlap by 11 nucleotides Psest_0634 and Psest_0635 are separated by 84 nucleotides
Psest_0633: Psest_0633 - Phage integrase family., at 685,034 to 687,130
_0633
Psest_0634: Psest_0634 - hypothetical protein, at 687,120 to 689,402
_0634
Psest_0635: Psest_0635 - ATP-dependent helicase HrpB, at 689,487 to 691,637
_0635
Position (kb) 687
688
689
690 Strain fitness (log2 ratio) -2
-1
0
1 at 686.180 kb on + strand, within Psest_0633 at 686.180 kb on + strand, within Psest_0633 at 686.181 kb on - strand, within Psest_0633 at 686.198 kb on + strand, within Psest_0633 at 686.244 kb on + strand, within Psest_0633 at 686.244 kb on + strand, within Psest_0633 at 686.245 kb on - strand, within Psest_0633 at 686.245 kb on - strand, within Psest_0633 at 686.366 kb on + strand, within Psest_0633 at 686.484 kb on + strand, within Psest_0633 at 686.514 kb on + strand, within Psest_0633 at 686.556 kb on - strand, within Psest_0633 at 686.556 kb on - strand, within Psest_0633 at 686.597 kb on + strand, within Psest_0633 at 686.598 kb on - strand, within Psest_0633 at 686.856 kb on - strand, within Psest_0633 at 686.856 kb on - strand, within Psest_0633 at 687.085 kb on - strand at 687.130 kb on + strand at 687.131 kb on - strand at 687.133 kb on - strand at 687.261 kb on + strand at 687.315 kb on + strand at 687.315 kb on + strand at 687.352 kb on + strand, within Psest_0634 at 687.353 kb on - strand, within Psest_0634 at 687.531 kb on + strand, within Psest_0634 at 687.673 kb on + strand, within Psest_0634 at 687.675 kb on + strand, within Psest_0634 at 687.676 kb on - strand, within Psest_0634 at 687.676 kb on - strand, within Psest_0634 at 687.676 kb on - strand, within Psest_0634 at 687.758 kb on + strand, within Psest_0634 at 687.882 kb on + strand, within Psest_0634 at 687.982 kb on - strand, within Psest_0634 at 688.076 kb on + strand, within Psest_0634 at 688.212 kb on + strand, within Psest_0634 at 688.212 kb on + strand, within Psest_0634 at 688.216 kb on - strand, within Psest_0634 at 688.755 kb on + strand, within Psest_0634 at 688.782 kb on - strand at 688.889 kb on - strand, within Psest_0634 at 688.889 kb on - strand, within Psest_0634 at 688.923 kb on + strand, within Psest_0634 at 688.924 kb on - strand, within Psest_0634 at 689.065 kb on + strand, within Psest_0634 at 689.065 kb on + strand, within Psest_0634 at 689.108 kb on + strand, within Psest_0634 at 689.108 kb on + strand, within Psest_0634 at 689.108 kb on + strand, within Psest_0634 at 689.108 kb on + strand, within Psest_0634 at 689.109 kb on - strand, within Psest_0634 at 689.239 kb on + strand at 689.239 kb on + strand at 689.240 kb on - strand at 689.270 kb on - strand at 689.270 kb on - strand at 689.270 kb on - strand at 689.270 kb on - strand at 689.366 kb on - strand at 689.439 kb on + strand at 689.452 kb on + strand at 689.452 kb on + strand at 689.452 kb on + strand at 689.460 kb on + strand at 689.460 kb on + strand at 689.461 kb on - strand at 689.461 kb on - strand at 689.461 kb on - strand at 689.461 kb on - strand at 689.466 kb on + strand at 690.059 kb on + strand, within Psest_0635 at 690.279 kb on + strand, within Psest_0635
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 686,180 + Psest_0633 0.55 -0.1 686,180 + Psest_0633 0.55 +0.3 686,181 - Psest_0633 0.55 +0.9 686,198 + Psest_0633 0.56 +0.3 686,244 + Psest_0633 0.58 +1.3 686,244 + Psest_0633 0.58 -1.3 686,245 - Psest_0633 0.58 -0.3 686,245 - Psest_0633 0.58 +0.3 686,366 + Psest_0633 0.64 -0.3 686,484 + Psest_0633 0.69 -0.6 686,514 + Psest_0633 0.71 -0.3 686,556 - Psest_0633 0.73 -0.6 686,556 - Psest_0633 0.73 -0.7 686,597 + Psest_0633 0.75 -0.7 686,598 - Psest_0633 0.75 -1.6 686,856 - Psest_0633 0.87 -0.7 686,856 - Psest_0633 0.87 -1.7 687,085 - -1.9 687,130 + -0.7 687,131 - +0.3 687,133 - -0.5 687,261 + +1.6 687,315 + -0.3 687,315 + +0.5 687,352 + Psest_0634 0.10 -1.2 687,353 - Psest_0634 0.10 -1.5 687,531 + Psest_0634 0.18 -1.4 687,673 + Psest_0634 0.24 +0.0 687,675 + Psest_0634 0.24 -0.4 687,676 - Psest_0634 0.24 -0.0 687,676 - Psest_0634 0.24 -0.4 687,676 - Psest_0634 0.24 +0.5 687,758 + Psest_0634 0.28 +0.7 687,882 + Psest_0634 0.33 -1.2 687,982 - Psest_0634 0.38 -1.2 688,076 + Psest_0634 0.42 +1.3 688,212 + Psest_0634 0.48 +0.3 688,212 + Psest_0634 0.48 +0.8 688,216 - Psest_0634 0.48 -0.1 688,755 + Psest_0634 0.72 +0.8 688,782 - +0.7 688,889 - Psest_0634 0.77 -0.3 688,889 - Psest_0634 0.77 -1.6 688,923 + Psest_0634 0.79 -1.7 688,924 - Psest_0634 0.79 -0.5 689,065 + Psest_0634 0.85 +0.5 689,065 + Psest_0634 0.85 -1.2 689,108 + Psest_0634 0.87 -0.6 689,108 + Psest_0634 0.87 -1.6 689,108 + Psest_0634 0.87 -2.1 689,108 + Psest_0634 0.87 +0.7 689,109 - Psest_0634 0.87 -0.6 689,239 + -1.3 689,239 + +0.7 689,240 - -1.6 689,270 - +0.5 689,270 - -2.3 689,270 - -0.7 689,270 - +0.4 689,366 - -0.1 689,439 + +0.4 689,452 + -1.2 689,452 + -0.7 689,452 + +1.3 689,460 + +0.7 689,460 + +1.3 689,461 - +0.2 689,461 - +1.3 689,461 - +0.1 689,461 - +0.3 689,466 + +1.3 690,059 + Psest_0635 0.27 +0.3 690,279 + Psest_0635 0.37 +1.2
Or see this region's nucleotide sequence