Experiment: m.b. Lomefloxacin 0.00078125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01670 and PGA1_262p01680 are separated by 57 nucleotides PGA1_262p01680 and PGA1_262p01690 are separated by 107 nucleotides PGA1_262p01690 and PGA1_262p01700 are separated by 22 nucleotides
PGA1_262p01670: PGA1_262p01670 - putative transcriptional regulator, LysR family, at 182,605 to 183,483
_262p01670
PGA1_262p01680: PGA1_262p01680 - hypothetical protein, at 183,541 to 184,329
_262p01680
PGA1_262p01690: PGA1_262p01690 - peptidase S15, at 184,437 to 186,416
_262p01690
PGA1_262p01700: PGA1_262p01700 - putative ABC transporter, solute-binding protein, at 186,439 to 187,989
_262p01700
Position (kb) 184
185
186
187 Strain fitness (log2 ratio) -2
-1
0
1 at 183.609 kb on + strand at 183.617 kb on - strand at 183.734 kb on - strand, within PGA1_262p01680 at 183.734 kb on - strand, within PGA1_262p01680 at 183.762 kb on + strand, within PGA1_262p01680 at 183.775 kb on - strand, within PGA1_262p01680 at 183.775 kb on - strand, within PGA1_262p01680 at 183.803 kb on - strand, within PGA1_262p01680 at 183.960 kb on + strand, within PGA1_262p01680 at 183.960 kb on + strand, within PGA1_262p01680 at 183.968 kb on - strand, within PGA1_262p01680 at 184.074 kb on + strand, within PGA1_262p01680 at 184.270 kb on + strand at 184.570 kb on - strand at 184.722 kb on + strand, within PGA1_262p01690 at 184.832 kb on + strand, within PGA1_262p01690 at 184.840 kb on - strand, within PGA1_262p01690 at 184.840 kb on - strand, within PGA1_262p01690 at 184.933 kb on + strand, within PGA1_262p01690 at 184.940 kb on - strand, within PGA1_262p01690 at 184.940 kb on - strand, within PGA1_262p01690 at 184.945 kb on - strand, within PGA1_262p01690 at 185.003 kb on - strand, within PGA1_262p01690 at 185.016 kb on + strand, within PGA1_262p01690 at 185.032 kb on - strand, within PGA1_262p01690 at 185.041 kb on + strand, within PGA1_262p01690 at 185.158 kb on + strand, within PGA1_262p01690 at 185.201 kb on - strand, within PGA1_262p01690 at 185.201 kb on - strand, within PGA1_262p01690 at 185.219 kb on + strand, within PGA1_262p01690 at 185.238 kb on - strand, within PGA1_262p01690 at 185.256 kb on - strand, within PGA1_262p01690 at 185.284 kb on - strand, within PGA1_262p01690 at 185.309 kb on + strand, within PGA1_262p01690 at 185.309 kb on + strand, within PGA1_262p01690 at 185.398 kb on + strand, within PGA1_262p01690 at 185.406 kb on - strand, within PGA1_262p01690 at 185.501 kb on + strand, within PGA1_262p01690 at 185.528 kb on - strand, within PGA1_262p01690 at 185.663 kb on - strand, within PGA1_262p01690 at 185.687 kb on - strand, within PGA1_262p01690 at 185.708 kb on + strand, within PGA1_262p01690 at 185.791 kb on + strand, within PGA1_262p01690 at 185.799 kb on - strand, within PGA1_262p01690 at 185.838 kb on - strand, within PGA1_262p01690 at 185.840 kb on + strand, within PGA1_262p01690 at 185.899 kb on - strand, within PGA1_262p01690 at 186.073 kb on - strand, within PGA1_262p01690 at 186.168 kb on - strand, within PGA1_262p01690 at 186.168 kb on - strand, within PGA1_262p01690 at 186.168 kb on - strand, within PGA1_262p01690 at 186.210 kb on - strand, within PGA1_262p01690 at 186.220 kb on - strand at 186.220 kb on - strand at 186.436 kb on - strand at 186.513 kb on - strand at 186.536 kb on - strand at 186.606 kb on - strand, within PGA1_262p01700 at 186.725 kb on - strand, within PGA1_262p01700 at 186.754 kb on + strand, within PGA1_262p01700 at 186.774 kb on - strand, within PGA1_262p01700 at 186.883 kb on - strand, within PGA1_262p01700 at 186.902 kb on + strand, within PGA1_262p01700 at 186.941 kb on + strand, within PGA1_262p01700 at 187.195 kb on - strand, within PGA1_262p01700
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.00078125 mM remove 183,609 + -1.6 183,617 - -1.1 183,734 - PGA1_262p01680 0.24 +0.6 183,734 - PGA1_262p01680 0.24 +0.8 183,762 + PGA1_262p01680 0.28 +0.8 183,775 - PGA1_262p01680 0.30 +0.8 183,775 - PGA1_262p01680 0.30 -2.1 183,803 - PGA1_262p01680 0.33 -0.9 183,960 + PGA1_262p01680 0.53 -0.4 183,960 + PGA1_262p01680 0.53 -1.0 183,968 - PGA1_262p01680 0.54 +1.5 184,074 + PGA1_262p01680 0.68 -2.5 184,270 + +0.2 184,570 - +1.4 184,722 + PGA1_262p01690 0.14 -0.5 184,832 + PGA1_262p01690 0.20 -0.3 184,840 - PGA1_262p01690 0.20 +1.6 184,840 - PGA1_262p01690 0.20 -0.8 184,933 + PGA1_262p01690 0.25 -0.8 184,940 - PGA1_262p01690 0.25 -0.0 184,940 - PGA1_262p01690 0.25 -0.1 184,945 - PGA1_262p01690 0.26 -1.0 185,003 - PGA1_262p01690 0.29 -0.7 185,016 + PGA1_262p01690 0.29 +0.1 185,032 - PGA1_262p01690 0.30 +1.0 185,041 + PGA1_262p01690 0.31 +0.1 185,158 + PGA1_262p01690 0.36 +1.1 185,201 - PGA1_262p01690 0.39 +0.2 185,201 - PGA1_262p01690 0.39 -0.6 185,219 + PGA1_262p01690 0.39 +1.1 185,238 - PGA1_262p01690 0.40 -0.4 185,256 - PGA1_262p01690 0.41 -0.4 185,284 - PGA1_262p01690 0.43 -0.8 185,309 + PGA1_262p01690 0.44 +0.3 185,309 + PGA1_262p01690 0.44 +1.5 185,398 + PGA1_262p01690 0.49 -0.3 185,406 - PGA1_262p01690 0.49 -0.3 185,501 + PGA1_262p01690 0.54 -2.7 185,528 - PGA1_262p01690 0.55 +0.9 185,663 - PGA1_262p01690 0.62 -0.9 185,687 - PGA1_262p01690 0.63 -2.4 185,708 + PGA1_262p01690 0.64 -1.1 185,791 + PGA1_262p01690 0.68 -0.7 185,799 - PGA1_262p01690 0.69 -2.7 185,838 - PGA1_262p01690 0.71 -0.5 185,840 + PGA1_262p01690 0.71 -1.9 185,899 - PGA1_262p01690 0.74 -0.9 186,073 - PGA1_262p01690 0.83 -0.9 186,168 - PGA1_262p01690 0.87 +0.9 186,168 - PGA1_262p01690 0.87 -0.9 186,168 - PGA1_262p01690 0.87 -0.3 186,210 - PGA1_262p01690 0.90 +0.3 186,220 - -0.2 186,220 - +1.1 186,436 - +0.2 186,513 - +0.7 186,536 - -0.1 186,606 - PGA1_262p01700 0.11 +0.3 186,725 - PGA1_262p01700 0.18 -2.1 186,754 + PGA1_262p01700 0.20 +1.4 186,774 - PGA1_262p01700 0.22 +1.2 186,883 - PGA1_262p01700 0.29 -0.2 186,902 + PGA1_262p01700 0.30 -0.2 186,941 + PGA1_262p01700 0.32 +0.7 187,195 - PGA1_262p01700 0.49 -1.3
Or see this region's nucleotide sequence