Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01000

Experiment: m.b. Lomefloxacin 0.00078125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00990 and PGA1_262p01000 are separated by 50 nucleotidesPGA1_262p01000 and PGA1_262p01010 overlap by 4 nucleotidesPGA1_262p01010 and PGA1_262p01020 are separated by 5 nucleotides PGA1_262p00990: PGA1_262p00990 - transcriptional regulator, LysR family, at 108,659 to 109,582 _262p00990 PGA1_262p01000: PGA1_262p01000 - dipeptide transport ATP-binding protein DppF, at 109,633 to 110,667 _262p01000 PGA1_262p01010: PGA1_262p01010 - dipeptide transport ATP-binding protein DppD, at 110,664 to 111,656 _262p01010 PGA1_262p01020: PGA1_262p01020 - dipeptide transport system permease protein DppC, at 111,662 to 112,609 _262p01020 Position (kb) 109 110 111Strain fitness (log2 ratio) -2 -1 0 1 2at 108.638 kb on - strandat 108.650 kb on - strandat 108.712 kb on - strandat 108.722 kb on - strandat 108.803 kb on + strand, within PGA1_262p00990at 108.826 kb on - strand, within PGA1_262p00990at 108.971 kb on + strand, within PGA1_262p00990at 109.078 kb on + strand, within PGA1_262p00990at 109.086 kb on - strand, within PGA1_262p00990at 109.086 kb on - strand, within PGA1_262p00990at 109.086 kb on - strand, within PGA1_262p00990at 109.086 kb on - strand, within PGA1_262p00990at 109.176 kb on - strand, within PGA1_262p00990at 109.340 kb on + strand, within PGA1_262p00990at 109.444 kb on + strand, within PGA1_262p00990at 109.599 kb on - strandat 109.604 kb on - strandat 109.615 kb on + strandat 109.622 kb on - strandat 109.637 kb on - strandat 109.637 kb on - strandat 109.639 kb on - strandat 109.639 kb on - strandat 109.639 kb on - strandat 109.763 kb on + strand, within PGA1_262p01000at 109.857 kb on - strand, within PGA1_262p01000at 109.892 kb on + strand, within PGA1_262p01000at 110.064 kb on - strand, within PGA1_262p01000at 110.268 kb on + strand, within PGA1_262p01000at 110.298 kb on + strand, within PGA1_262p01000at 110.309 kb on + strand, within PGA1_262p01000at 110.309 kb on + strand, within PGA1_262p01000at 110.592 kb on - strandat 110.598 kb on - strandat 110.730 kb on - strandat 110.900 kb on + strand, within PGA1_262p01010at 110.908 kb on + strand, within PGA1_262p01010at 110.908 kb on + strand, within PGA1_262p01010at 110.916 kb on - strand, within PGA1_262p01010at 110.961 kb on - strand, within PGA1_262p01010at 111.017 kb on + strand, within PGA1_262p01010at 111.017 kb on + strand, within PGA1_262p01010at 111.032 kb on + strand, within PGA1_262p01010at 111.101 kb on + strand, within PGA1_262p01010at 111.195 kb on - strand, within PGA1_262p01010at 111.230 kb on - strand, within PGA1_262p01010at 111.237 kb on + strand, within PGA1_262p01010at 111.552 kb on + strand, within PGA1_262p01010at 111.659 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.00078125 mM
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108,638 - -1.4
108,650 - -0.9
108,712 - -0.2
108,722 - +1.5
108,803 + PGA1_262p00990 0.16 -0.1
108,826 - PGA1_262p00990 0.18 +0.2
108,971 + PGA1_262p00990 0.34 -1.3
109,078 + PGA1_262p00990 0.45 +0.4
109,086 - PGA1_262p00990 0.46 -2.5
109,086 - PGA1_262p00990 0.46 +0.6
109,086 - PGA1_262p00990 0.46 -1.2
109,086 - PGA1_262p00990 0.46 -0.4
109,176 - PGA1_262p00990 0.56 -0.4
109,340 + PGA1_262p00990 0.74 -0.4
109,444 + PGA1_262p00990 0.85 -0.1
109,599 - +2.5
109,604 - -0.4
109,615 + -1.7
109,622 - +1.0
109,637 - +0.9
109,637 - +0.9
109,639 - -0.8
109,639 - -0.7
109,639 - +0.9
109,763 + PGA1_262p01000 0.13 -0.3
109,857 - PGA1_262p01000 0.22 -1.7
109,892 + PGA1_262p01000 0.25 -1.1
110,064 - PGA1_262p01000 0.42 -0.2
110,268 + PGA1_262p01000 0.61 -2.6
110,298 + PGA1_262p01000 0.64 -1.5
110,309 + PGA1_262p01000 0.65 +0.1
110,309 + PGA1_262p01000 0.65 -1.7
110,592 - -0.7
110,598 - +0.7
110,730 - +1.1
110,900 + PGA1_262p01010 0.24 -0.4
110,908 + PGA1_262p01010 0.25 -0.0
110,908 + PGA1_262p01010 0.25 +0.1
110,916 - PGA1_262p01010 0.25 +0.3
110,961 - PGA1_262p01010 0.30 +1.1
111,017 + PGA1_262p01010 0.36 -0.7
111,017 + PGA1_262p01010 0.36 -1.1
111,032 + PGA1_262p01010 0.37 +0.1
111,101 + PGA1_262p01010 0.44 -0.3
111,195 - PGA1_262p01010 0.53 +0.7
111,230 - PGA1_262p01010 0.57 +0.8
111,237 + PGA1_262p01010 0.58 -1.6
111,552 + PGA1_262p01010 0.89 -1.8
111,659 + +0.5

Or see this region's nucleotide sequence