Experiment: m.b. Lomefloxacin 0.00078125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00550 and PGA1_262p00560 overlap by 1 nucleotides PGA1_262p00560 and PGA1_262p00570 are separated by 27 nucleotides PGA1_262p00570 and PGA1_262p00580 are separated by 26 nucleotides
PGA1_262p00550: PGA1_262p00550 - putative DNA modification/repair radical SAM protein, at 63,777 to 65,033
_262p00550
PGA1_262p00560: PGA1_262p00560 - uracil DNA glycosylase-like protein, at 65,033 to 66,478
_262p00560
PGA1_262p00570: PGA1_262p00570 - hypothetical protein, at 66,506 to 66,763
_262p00570
PGA1_262p00580: PGA1_262p00580 - putative polysaccharide biosynthesis/export protein, at 66,790 to 68,163
_262p00580
Position (kb) 65
66
67 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 64.240 kb on - strand, within PGA1_262p00550 at 64.342 kb on - strand, within PGA1_262p00550 at 64.376 kb on + strand, within PGA1_262p00550 at 64.475 kb on + strand, within PGA1_262p00550 at 64.592 kb on - strand, within PGA1_262p00550 at 64.654 kb on - strand, within PGA1_262p00550 at 64.793 kb on - strand, within PGA1_262p00550 at 64.793 kb on - strand, within PGA1_262p00550 at 64.856 kb on + strand, within PGA1_262p00550 at 64.986 kb on - strand at 65.069 kb on - strand at 65.074 kb on - strand at 65.087 kb on + strand at 65.173 kb on + strand at 65.175 kb on + strand at 65.486 kb on - strand, within PGA1_262p00560 at 65.527 kb on - strand, within PGA1_262p00560 at 65.596 kb on + strand, within PGA1_262p00560 at 65.619 kb on - strand, within PGA1_262p00560 at 65.681 kb on + strand, within PGA1_262p00560 at 66.019 kb on - strand, within PGA1_262p00560 at 66.035 kb on - strand, within PGA1_262p00560 at 66.311 kb on + strand, within PGA1_262p00560 at 66.365 kb on - strand at 66.532 kb on + strand, within PGA1_262p00570 at 66.540 kb on - strand, within PGA1_262p00570 at 66.540 kb on - strand, within PGA1_262p00570 at 66.542 kb on + strand, within PGA1_262p00570 at 66.542 kb on + strand, within PGA1_262p00570 at 66.661 kb on + strand, within PGA1_262p00570 at 66.692 kb on - strand, within PGA1_262p00570 at 66.751 kb on + strand at 66.754 kb on - strand at 66.761 kb on + strand at 66.844 kb on - strand at 66.924 kb on + strand at 66.932 kb on - strand, within PGA1_262p00580 at 66.932 kb on - strand, within PGA1_262p00580 at 67.007 kb on + strand, within PGA1_262p00580 at 67.007 kb on + strand, within PGA1_262p00580 at 67.055 kb on + strand, within PGA1_262p00580 at 67.063 kb on - strand, within PGA1_262p00580 at 67.135 kb on + strand, within PGA1_262p00580 at 67.137 kb on + strand, within PGA1_262p00580 at 67.197 kb on + strand, within PGA1_262p00580 at 67.205 kb on - strand, within PGA1_262p00580 at 67.234 kb on + strand, within PGA1_262p00580 at 67.240 kb on - strand, within PGA1_262p00580 at 67.368 kb on - strand, within PGA1_262p00580 at 67.368 kb on - strand, within PGA1_262p00580
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.00078125 mM remove 64,240 - PGA1_262p00550 0.37 +0.4 64,342 - PGA1_262p00550 0.45 -1.3 64,376 + PGA1_262p00550 0.48 -1.4 64,475 + PGA1_262p00550 0.56 -1.9 64,592 - PGA1_262p00550 0.65 -3.1 64,654 - PGA1_262p00550 0.70 -0.3 64,793 - PGA1_262p00550 0.81 -0.1 64,793 - PGA1_262p00550 0.81 -0.5 64,856 + PGA1_262p00550 0.86 -0.9 64,986 - -1.1 65,069 - +0.8 65,074 - -0.1 65,087 + +0.6 65,173 + -1.6 65,175 + -0.2 65,486 - PGA1_262p00560 0.31 -1.4 65,527 - PGA1_262p00560 0.34 -0.3 65,596 + PGA1_262p00560 0.39 +0.2 65,619 - PGA1_262p00560 0.41 -1.2 65,681 + PGA1_262p00560 0.45 -1.3 66,019 - PGA1_262p00560 0.68 +0.6 66,035 - PGA1_262p00560 0.69 -1.2 66,311 + PGA1_262p00560 0.88 -1.7 66,365 - +2.6 66,532 + PGA1_262p00570 0.10 -1.7 66,540 - PGA1_262p00570 0.13 -0.2 66,540 - PGA1_262p00570 0.13 -0.6 66,542 + PGA1_262p00570 0.14 -1.4 66,542 + PGA1_262p00570 0.14 -1.0 66,661 + PGA1_262p00570 0.60 -0.9 66,692 - PGA1_262p00570 0.72 +1.1 66,751 + +1.6 66,754 - +1.2 66,761 + -1.2 66,844 - -0.7 66,924 + +0.0 66,932 - PGA1_262p00580 0.10 -1.4 66,932 - PGA1_262p00580 0.10 +0.6 67,007 + PGA1_262p00580 0.16 -0.4 67,007 + PGA1_262p00580 0.16 -0.1 67,055 + PGA1_262p00580 0.19 +0.4 67,063 - PGA1_262p00580 0.20 +0.4 67,135 + PGA1_262p00580 0.25 -0.4 67,137 + PGA1_262p00580 0.25 +0.1 67,197 + PGA1_262p00580 0.30 +0.5 67,205 - PGA1_262p00580 0.30 +0.1 67,234 + PGA1_262p00580 0.32 -1.2 67,240 - PGA1_262p00580 0.33 -1.0 67,368 - PGA1_262p00580 0.42 -1.6 67,368 - PGA1_262p00580 0.42 +0.8
Or see this region's nucleotide sequence