Experiment: m.b. Lomefloxacin 0.00078125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c19850 and PGA1_c19860 are separated by 123 nucleotides PGA1_c19860 and PGA1_c19870 are separated by 141 nucleotides
PGA1_c19850: PGA1_c19850 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 2,060,758 to 2,061,735
_c19850
PGA1_c19860: PGA1_c19860 - dimethyladenosine transferase KsgA, at 2,061,859 to 2,062,704
_c19860
PGA1_c19870: PGA1_c19870 - hypothetical protein, at 2,062,846 to 2,063,565
_c19870
Position (kb)
2061
2062
2063 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2061.717 kb on + strand at 2061.724 kb on - strand at 2061.725 kb on - strand at 2061.739 kb on + strand at 2061.814 kb on - strand at 2061.814 kb on - strand at 2061.880 kb on - strand at 2061.886 kb on - strand at 2061.888 kb on + strand at 2062.043 kb on + strand, within PGA1_c19860 at 2062.064 kb on - strand, within PGA1_c19860 at 2062.064 kb on - strand, within PGA1_c19860 at 2062.095 kb on - strand, within PGA1_c19860 at 2062.139 kb on - strand, within PGA1_c19860 at 2062.169 kb on + strand, within PGA1_c19860 at 2062.174 kb on + strand, within PGA1_c19860 at 2062.192 kb on - strand, within PGA1_c19860 at 2062.292 kb on + strand, within PGA1_c19860 at 2062.343 kb on - strand, within PGA1_c19860 at 2062.368 kb on - strand, within PGA1_c19860 at 2062.406 kb on + strand, within PGA1_c19860 at 2062.549 kb on - strand, within PGA1_c19860 at 2062.573 kb on + strand, within PGA1_c19860 at 2062.616 kb on - strand, within PGA1_c19860 at 2062.650 kb on + strand at 2062.650 kb on + strand at 2062.663 kb on - strand at 2062.672 kb on + strand at 2062.698 kb on + strand at 2062.701 kb on - strand at 2062.726 kb on - strand at 2062.918 kb on - strand, within PGA1_c19870 at 2063.023 kb on - strand, within PGA1_c19870 at 2063.044 kb on - strand, within PGA1_c19870 at 2063.582 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.00078125 mM remove 2,061,717 + +0.8 2,061,724 - +1.3 2,061,725 - +0.5 2,061,739 + +1.0 2,061,814 - +0.4 2,061,814 - +0.3 2,061,880 - -0.6 2,061,886 - -0.3 2,061,888 + -2.3 2,062,043 + PGA1_c19860 0.22 -1.2 2,062,064 - PGA1_c19860 0.24 +0.5 2,062,064 - PGA1_c19860 0.24 -0.7 2,062,095 - PGA1_c19860 0.28 +0.8 2,062,139 - PGA1_c19860 0.33 -2.5 2,062,169 + PGA1_c19860 0.37 -1.0 2,062,174 + PGA1_c19860 0.37 -0.4 2,062,192 - PGA1_c19860 0.39 -0.7 2,062,292 + PGA1_c19860 0.51 -1.5 2,062,343 - PGA1_c19860 0.57 -1.2 2,062,368 - PGA1_c19860 0.60 +1.6 2,062,406 + PGA1_c19860 0.65 +0.1 2,062,549 - PGA1_c19860 0.82 +0.8 2,062,573 + PGA1_c19860 0.84 +0.8 2,062,616 - PGA1_c19860 0.89 -1.5 2,062,650 + +0.4 2,062,650 + +0.1 2,062,663 - +1.8 2,062,672 + +2.4 2,062,698 + +0.4 2,062,701 - +0.3 2,062,726 - -0.1 2,062,918 - PGA1_c19870 0.10 -2.6 2,063,023 - PGA1_c19870 0.25 +0.2 2,063,044 - PGA1_c19870 0.28 -0.3 2,063,582 - -0.7
Or see this region's nucleotide sequence