Experiment: m.b. perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_180 and HP15_181 are separated by 11 nucleotides HP15_181 and HP15_182 are separated by 152 nucleotides HP15_182 and HP15_183 overlap by 4 nucleotides
HP15_180: HP15_180 - amino acid transporter, at 170,395 to 171,747
_180
HP15_181: HP15_181 - conserved hypothetical protein, at 171,759 to 172,112
_181
HP15_182: HP15_182 - copper resistance B precursor, at 172,265 to 173,014
_182
HP15_183: HP15_183 - copper-resistance protein, CopA family, at 173,011 to 174,771
_183
Position (kb)
171
172
173 Strain fitness (log2 ratio)
-1
0
1 at 170.792 kb on - strand, within HP15_180 at 171.008 kb on + strand, within HP15_180 at 171.056 kb on + strand, within HP15_180 at 171.099 kb on - strand, within HP15_180 at 171.381 kb on + strand, within HP15_180 at 171.396 kb on + strand, within HP15_180 at 171.481 kb on + strand, within HP15_180 at 171.488 kb on + strand, within HP15_180 at 171.489 kb on - strand, within HP15_180 at 171.496 kb on - strand, within HP15_180 at 171.519 kb on - strand, within HP15_180 at 171.616 kb on + strand at 171.616 kb on + strand at 171.678 kb on + strand at 171.678 kb on + strand at 171.678 kb on + strand at 171.694 kb on - strand at 171.725 kb on - strand at 171.735 kb on + strand at 171.738 kb on - strand at 171.836 kb on + strand, within HP15_181 at 171.895 kb on + strand, within HP15_181 at 171.933 kb on - strand, within HP15_181 at 171.996 kb on - strand, within HP15_181 at 171.996 kb on - strand, within HP15_181 at 172.026 kb on + strand, within HP15_181 at 172.036 kb on + strand, within HP15_181 at 172.114 kb on + strand at 172.114 kb on + strand at 172.333 kb on + strand at 172.351 kb on + strand, within HP15_182 at 172.468 kb on - strand, within HP15_182 at 172.480 kb on + strand, within HP15_182 at 172.480 kb on + strand, within HP15_182 at 172.488 kb on - strand, within HP15_182 at 172.498 kb on - strand, within HP15_182 at 172.628 kb on + strand, within HP15_182 at 172.636 kb on - strand, within HP15_182 at 172.638 kb on + strand, within HP15_182 at 172.638 kb on + strand, within HP15_182 at 172.666 kb on - strand, within HP15_182 at 172.776 kb on + strand, within HP15_182 at 172.888 kb on + strand, within HP15_182 at 172.898 kb on - strand, within HP15_182 at 173.053 kb on - strand at 173.053 kb on - strand at 173.053 kb on - strand at 173.053 kb on - strand at 173.055 kb on + strand at 173.086 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM remove 170,792 - HP15_180 0.29 +0.4 171,008 + HP15_180 0.45 -0.9 171,056 + HP15_180 0.49 -0.7 171,099 - HP15_180 0.52 +0.2 171,381 + HP15_180 0.73 -0.4 171,396 + HP15_180 0.74 +1.0 171,481 + HP15_180 0.80 +0.2 171,488 + HP15_180 0.81 -0.0 171,489 - HP15_180 0.81 +0.3 171,496 - HP15_180 0.81 +1.7 171,519 - HP15_180 0.83 -0.4 171,616 + -0.5 171,616 + +0.5 171,678 + +0.5 171,678 + -0.6 171,678 + -0.5 171,694 - -0.3 171,725 - +0.2 171,735 + +0.7 171,738 - -0.3 171,836 + HP15_181 0.22 +0.1 171,895 + HP15_181 0.38 -1.3 171,933 - HP15_181 0.49 -1.3 171,996 - HP15_181 0.67 -1.1 171,996 - HP15_181 0.67 -0.4 172,026 + HP15_181 0.75 +0.6 172,036 + HP15_181 0.78 -0.8 172,114 + -0.1 172,114 + -0.7 172,333 + -0.1 172,351 + HP15_182 0.11 -0.3 172,468 - HP15_182 0.27 +0.6 172,480 + HP15_182 0.29 -0.1 172,480 + HP15_182 0.29 +0.0 172,488 - HP15_182 0.30 -0.1 172,498 - HP15_182 0.31 -1.5 172,628 + HP15_182 0.48 +1.4 172,636 - HP15_182 0.49 +0.2 172,638 + HP15_182 0.50 -0.9 172,638 + HP15_182 0.50 +0.2 172,666 - HP15_182 0.53 +0.3 172,776 + HP15_182 0.68 -0.2 172,888 + HP15_182 0.83 +0.7 172,898 - HP15_182 0.84 +1.1 173,053 - +0.4 173,053 - +0.5 173,053 - -0.7 173,053 - -1.3 173,055 + +0.8 173,086 - -0.1
Or see this region's nucleotide sequence