Experiment: m.b. perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1483 and HP15_1484 are separated by 593 nucleotides HP15_1484 and HP15_1485 overlap by 8 nucleotides HP15_1485 and HP15_1486 are separated by 21 nucleotides HP15_1486 and HP15_1487 overlap by 21 nucleotides
HP15_1483: HP15_1483 - 1,6-bisphosphatase and related enzyme of inositol monophosphatase-like protein, at 1,559,720 to 1,560,109
_1483
HP15_1484: HP15_1484 - RNA methyltransferase, TrmH family, group 1, at 1,560,703 to 1,561,566
_1484
HP15_1485: HP15_1485 - serine O-acetyltransferase, at 1,561,559 to 1,562,332
_1485
HP15_1486: HP15_1486 - hypothetical protein, at 1,562,354 to 1,562,470
_1486
HP15_1487: HP15_1487 - transcriptional regulator, BadM/Rrf2 family, at 1,562,450 to 1,562,908
_1487
Position (kb)
1560
1561
1562 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1560.619 kb on + strand at 1560.620 kb on + strand at 1560.638 kb on - strand at 1560.761 kb on - strand at 1561.039 kb on + strand, within HP15_1484 at 1561.083 kb on - strand, within HP15_1484 at 1561.096 kb on + strand, within HP15_1484 at 1561.174 kb on - strand, within HP15_1484 at 1561.237 kb on - strand, within HP15_1484 at 1561.470 kb on + strand, within HP15_1484 at 1561.543 kb on + strand at 1561.548 kb on + strand at 1562.313 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM remove 1,560,619 + +1.1 1,560,620 + -1.8 1,560,638 - +0.1 1,560,761 - -3.0 1,561,039 + HP15_1484 0.39 -0.6 1,561,083 - HP15_1484 0.44 -2.4 1,561,096 + HP15_1484 0.45 -1.6 1,561,174 - HP15_1484 0.55 -3.2 1,561,237 - HP15_1484 0.62 -0.6 1,561,470 + HP15_1484 0.89 -0.8 1,561,543 + -2.7 1,561,548 + -3.0 1,562,313 + -0.8
Or see this region's nucleotide sequence