Strain Fitness in Marinobacter adhaerens HP15 around HP15_1484

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1483 and HP15_1484 are separated by 593 nucleotidesHP15_1484 and HP15_1485 overlap by 8 nucleotidesHP15_1485 and HP15_1486 are separated by 21 nucleotidesHP15_1486 and HP15_1487 overlap by 21 nucleotides HP15_1483: HP15_1483 - 1,6-bisphosphatase and related enzyme of inositol monophosphatase-like protein, at 1,559,720 to 1,560,109 _1483 HP15_1484: HP15_1484 - RNA methyltransferase, TrmH family, group 1, at 1,560,703 to 1,561,566 _1484 HP15_1485: HP15_1485 - serine O-acetyltransferase, at 1,561,559 to 1,562,332 _1485 HP15_1486: HP15_1486 - hypothetical protein, at 1,562,354 to 1,562,470 _1486 HP15_1487: HP15_1487 - transcriptional regulator, BadM/Rrf2 family, at 1,562,450 to 1,562,908 _1487 Position (kb) 1560 1561 1562Strain fitness (log2 ratio) -3 -2 -1 0 1at 1560.619 kb on + strandat 1560.620 kb on + strandat 1560.638 kb on - strandat 1560.761 kb on - strandat 1561.039 kb on + strand, within HP15_1484at 1561.083 kb on - strand, within HP15_1484at 1561.096 kb on + strand, within HP15_1484at 1561.174 kb on - strand, within HP15_1484at 1561.237 kb on - strand, within HP15_1484at 1561.470 kb on + strand, within HP15_1484at 1561.543 kb on + strandat 1561.548 kb on + strandat 1562.313 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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1,560,619 + +1.1
1,560,620 + -1.8
1,560,638 - +0.1
1,560,761 - -3.0
1,561,039 + HP15_1484 0.39 -0.6
1,561,083 - HP15_1484 0.44 -2.4
1,561,096 + HP15_1484 0.45 -1.6
1,561,174 - HP15_1484 0.55 -3.2
1,561,237 - HP15_1484 0.62 -0.6
1,561,470 + HP15_1484 0.89 -0.8
1,561,543 + -2.7
1,561,548 + -3.0
1,562,313 + -0.8

Or see this region's nucleotide sequence