Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c14200

Experiment: m.b. Lomefloxacin 0.00078125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c14190 and PGA1_c14200 are separated by 273 nucleotidesPGA1_c14200 and PGA1_c14210 are separated by 147 nucleotides PGA1_c14190: PGA1_c14190 - putative transcriptional regulator, AraC family, at 1,473,948 to 1,474,772 _c14190 PGA1_c14200: PGA1_c14200 - tRNA delta(2)-isopentenylpyrophosphate transferase MiaA, at 1,475,046 to 1,475,918 _c14200 PGA1_c14210: PGA1_c14210 - uridylate kinase PyrH, at 1,476,066 to 1,476,815 _c14210 Position (kb) 1475 1476Strain fitness (log2 ratio) -1 0 1 2 3at 1474.055 kb on - strand, within PGA1_c14190at 1474.085 kb on + strand, within PGA1_c14190at 1474.093 kb on - strand, within PGA1_c14190at 1474.093 kb on - strand, within PGA1_c14190at 1474.114 kb on + strand, within PGA1_c14190at 1474.150 kb on + strand, within PGA1_c14190at 1474.199 kb on + strand, within PGA1_c14190at 1474.220 kb on + strand, within PGA1_c14190at 1474.264 kb on + strand, within PGA1_c14190at 1474.264 kb on + strand, within PGA1_c14190at 1474.272 kb on - strand, within PGA1_c14190at 1474.272 kb on - strandat 1474.309 kb on + strand, within PGA1_c14190at 1474.317 kb on - strand, within PGA1_c14190at 1474.360 kb on + strand, within PGA1_c14190at 1474.401 kb on - strand, within PGA1_c14190at 1474.420 kb on + strand, within PGA1_c14190at 1474.452 kb on - strand, within PGA1_c14190at 1474.502 kb on + strand, within PGA1_c14190at 1474.510 kb on - strand, within PGA1_c14190at 1474.519 kb on + strand, within PGA1_c14190at 1474.519 kb on + strand, within PGA1_c14190at 1474.593 kb on + strand, within PGA1_c14190at 1474.601 kb on - strand, within PGA1_c14190at 1474.601 kb on - strand, within PGA1_c14190at 1474.634 kb on + strand, within PGA1_c14190at 1474.635 kb on + strand, within PGA1_c14190at 1474.697 kb on + strandat 1474.743 kb on - strandat 1474.778 kb on + strandat 1474.784 kb on + strandat 1474.792 kb on - strandat 1474.797 kb on - strandat 1474.896 kb on - strandat 1474.896 kb on - strandat 1474.974 kb on - strandat 1474.974 kb on - strandat 1475.006 kb on - strandat 1475.020 kb on + strandat 1475.042 kb on + strandat 1475.957 kb on + strandat 1475.957 kb on + strandat 1475.957 kb on + strandat 1475.960 kb on - strandat 1475.965 kb on - strandat 1475.997 kb on + strandat 1476.812 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.00078125 mM
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1,474,055 - PGA1_c14190 0.13 +1.7
1,474,085 + PGA1_c14190 0.17 +0.9
1,474,093 - PGA1_c14190 0.18 -0.6
1,474,093 - PGA1_c14190 0.18 +1.4
1,474,114 + PGA1_c14190 0.20 +0.3
1,474,150 + PGA1_c14190 0.24 +1.8
1,474,199 + PGA1_c14190 0.30 +1.8
1,474,220 + PGA1_c14190 0.33 +3.0
1,474,264 + PGA1_c14190 0.38 +2.0
1,474,264 + PGA1_c14190 0.38 +0.1
1,474,272 - PGA1_c14190 0.39 -0.0
1,474,272 - -0.3
1,474,309 + PGA1_c14190 0.44 +1.2
1,474,317 - PGA1_c14190 0.45 +2.6
1,474,360 + PGA1_c14190 0.50 +3.6
1,474,401 - PGA1_c14190 0.55 +0.0
1,474,420 + PGA1_c14190 0.57 +1.1
1,474,452 - PGA1_c14190 0.61 +1.2
1,474,502 + PGA1_c14190 0.67 -0.4
1,474,510 - PGA1_c14190 0.68 +3.2
1,474,519 + PGA1_c14190 0.69 +0.8
1,474,519 + PGA1_c14190 0.69 +1.8
1,474,593 + PGA1_c14190 0.78 -1.5
1,474,601 - PGA1_c14190 0.79 +2.6
1,474,601 - PGA1_c14190 0.79 +3.6
1,474,634 + PGA1_c14190 0.83 +0.4
1,474,635 + PGA1_c14190 0.83 +0.4
1,474,697 + +1.4
1,474,743 - +2.3
1,474,778 + +1.9
1,474,784 + +1.6
1,474,792 - -0.1
1,474,797 - -1.0
1,474,896 - -0.3
1,474,896 - +1.6
1,474,974 - +1.1
1,474,974 - -0.2
1,475,006 - -0.4
1,475,020 + +1.0
1,475,042 + -0.1
1,475,957 + +2.2
1,475,957 + +0.7
1,475,957 + +1.2
1,475,960 - +1.4
1,475,965 - +0.6
1,475,997 + +1.0
1,476,812 - +0.2

Or see this region's nucleotide sequence