Strain Fitness in Marinobacter adhaerens HP15 around HP15_1344

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1343 and HP15_1344 are separated by 242 nucleotidesHP15_1344 and HP15_1345 are separated by 18 nucleotidesHP15_1345 and HP15_1346 are separated by 3 nucleotides HP15_1343: HP15_1343 - 2-hydroxy-3-oxopropionate reductase, at 1,410,945 to 1,411,817 _1343 HP15_1344: HP15_1344 - thiosulfate transporter subunit, at 1,412,060 to 1,413,094 _1344 HP15_1345: HP15_1345 - sulphate ABC transporter, permease protein CysT, at 1,413,113 to 1,413,985 _1345 HP15_1346: HP15_1346 - sulfate ABC transporter, inner membrane subunit CysW, at 1,413,989 to 1,414,819 _1346 Position (kb) 1412 1413 1414Strain fitness (log2 ratio) -3 -2 -1 0 1at 1411.094 kb on - strand, within HP15_1343at 1411.138 kb on + strand, within HP15_1343at 1411.196 kb on - strand, within HP15_1343at 1411.268 kb on - strand, within HP15_1343at 1411.272 kb on - strand, within HP15_1343at 1411.362 kb on - strand, within HP15_1343at 1411.362 kb on - strand, within HP15_1343at 1411.375 kb on - strand, within HP15_1343at 1411.481 kb on - strand, within HP15_1343at 1411.523 kb on + strand, within HP15_1343at 1411.629 kb on + strand, within HP15_1343at 1411.629 kb on + strand, within HP15_1343at 1411.837 kb on + strandat 1411.883 kb on + strandat 1411.891 kb on - strandat 1411.901 kb on - strandat 1411.969 kb on + strandat 1411.970 kb on + strandat 1411.977 kb on - strandat 1411.977 kb on - strandat 1412.153 kb on + strandat 1412.309 kb on + strand, within HP15_1344at 1412.327 kb on - strand, within HP15_1344at 1412.469 kb on - strand, within HP15_1344at 1412.498 kb on + strand, within HP15_1344at 1412.570 kb on - strand, within HP15_1344at 1412.591 kb on - strand, within HP15_1344at 1412.591 kb on - strand, within HP15_1344at 1412.601 kb on - strand, within HP15_1344at 1412.601 kb on - strand, within HP15_1344at 1412.630 kb on + strand, within HP15_1344at 1412.652 kb on + strand, within HP15_1344at 1412.653 kb on + strand, within HP15_1344at 1412.661 kb on - strand, within HP15_1344at 1412.872 kb on + strand, within HP15_1344at 1412.872 kb on + strand, within HP15_1344at 1412.891 kb on + strand, within HP15_1344at 1413.126 kb on + strandat 1413.149 kb on + strandat 1413.279 kb on + strand, within HP15_1345at 1413.297 kb on - strand, within HP15_1345at 1413.373 kb on - strand, within HP15_1345at 1413.469 kb on + strand, within HP15_1345at 1413.574 kb on + strand, within HP15_1345at 1413.593 kb on + strand, within HP15_1345at 1413.593 kb on + strand, within HP15_1345at 1413.601 kb on - strand, within HP15_1345at 1413.601 kb on - strand, within HP15_1345at 1413.648 kb on - strand, within HP15_1345at 1413.679 kb on + strand, within HP15_1345at 1413.718 kb on + strand, within HP15_1345at 1413.774 kb on + strand, within HP15_1345at 1413.774 kb on + strand, within HP15_1345at 1413.833 kb on - strand, within HP15_1345at 1413.985 kb on + strandat 1413.988 kb on - strandat 1413.988 kb on - strandat 1413.988 kb on - strandat 1413.993 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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1,411,094 - HP15_1343 0.17 +0.1
1,411,138 + HP15_1343 0.22 +0.3
1,411,196 - HP15_1343 0.29 +0.3
1,411,268 - HP15_1343 0.37 +0.6
1,411,272 - HP15_1343 0.37 +0.5
1,411,362 - HP15_1343 0.48 -0.8
1,411,362 - HP15_1343 0.48 +0.3
1,411,375 - HP15_1343 0.49 -0.2
1,411,481 - HP15_1343 0.61 -1.5
1,411,523 + HP15_1343 0.66 +0.3
1,411,629 + HP15_1343 0.78 +0.3
1,411,629 + HP15_1343 0.78 +0.4
1,411,837 + -0.3
1,411,883 + -1.2
1,411,891 - -1.2
1,411,901 - +0.4
1,411,969 + -0.9
1,411,970 + -2.6
1,411,977 - +0.9
1,411,977 - -1.8
1,412,153 + -2.9
1,412,309 + HP15_1344 0.24 -1.9
1,412,327 - HP15_1344 0.26 -1.5
1,412,469 - HP15_1344 0.40 -2.3
1,412,498 + HP15_1344 0.42 -2.7
1,412,570 - HP15_1344 0.49 -1.8
1,412,591 - HP15_1344 0.51 -1.9
1,412,591 - HP15_1344 0.51 -3.5
1,412,601 - HP15_1344 0.52 -0.7
1,412,601 - HP15_1344 0.52 -1.6
1,412,630 + HP15_1344 0.55 +0.3
1,412,652 + HP15_1344 0.57 -1.6
1,412,653 + HP15_1344 0.57 -2.9
1,412,661 - HP15_1344 0.58 -1.2
1,412,872 + HP15_1344 0.78 -3.4
1,412,872 + HP15_1344 0.78 -2.2
1,412,891 + HP15_1344 0.80 -1.3
1,413,126 + -1.8
1,413,149 + -1.9
1,413,279 + HP15_1345 0.19 -1.3
1,413,297 - HP15_1345 0.21 -2.0
1,413,373 - HP15_1345 0.30 -2.5
1,413,469 + HP15_1345 0.41 -1.2
1,413,574 + HP15_1345 0.53 -0.5
1,413,593 + HP15_1345 0.55 -1.2
1,413,593 + HP15_1345 0.55 -2.9
1,413,601 - HP15_1345 0.56 -2.1
1,413,601 - HP15_1345 0.56 -0.5
1,413,648 - HP15_1345 0.61 -2.2
1,413,679 + HP15_1345 0.65 -1.3
1,413,718 + HP15_1345 0.69 -0.7
1,413,774 + HP15_1345 0.76 -2.1
1,413,774 + HP15_1345 0.76 -2.4
1,413,833 - HP15_1345 0.82 -2.0
1,413,985 + -0.8
1,413,988 - -1.5
1,413,988 - -1.8
1,413,988 - -0.8
1,413,993 - -2.1

Or see this region's nucleotide sequence