Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07590 and PGA1_c07600 are separated by 62 nucleotides PGA1_c07600 and PGA1_c07610 are separated by 144 nucleotides PGA1_c07610 and PGA1_c07620 are separated by 114 nucleotides
PGA1_c07590: PGA1_c07590 - aerotaxis receptor-like protein, at 784,790 to 786,010
_c07590
PGA1_c07600: PGA1_c07600 - transcriptional regulator, AsnC / lrp family, at 786,073 to 786,528
_c07600
PGA1_c07610: PGA1_c07610 - 4-hydroxyphenylpyruvate dioxygenase Hpd, at 786,673 to 787,773
_c07610
PGA1_c07620: PGA1_c07620 - Type IV pilus biogenesis., at 787,888 to 790,587
_c07620
Position (kb) 786
787
788 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 785.688 kb on + strand, within PGA1_c07590 at 785.706 kb on + strand, within PGA1_c07590 at 785.714 kb on - strand, within PGA1_c07590 at 785.714 kb on - strand, within PGA1_c07590 at 785.741 kb on + strand, within PGA1_c07590 at 785.757 kb on + strand, within PGA1_c07590 at 785.757 kb on + strand, within PGA1_c07590 at 785.765 kb on - strand, within PGA1_c07590 at 785.805 kb on + strand, within PGA1_c07590 at 785.805 kb on + strand, within PGA1_c07590 at 785.805 kb on + strand, within PGA1_c07590 at 785.805 kb on + strand, within PGA1_c07590 at 785.813 kb on - strand, within PGA1_c07590 at 785.813 kb on - strand, within PGA1_c07590 at 785.813 kb on - strand, within PGA1_c07590 at 785.813 kb on - strand, within PGA1_c07590 at 785.870 kb on + strand, within PGA1_c07590 at 785.911 kb on + strand at 786.025 kb on + strand at 786.025 kb on + strand at 786.025 kb on + strand at 786.038 kb on - strand at 786.041 kb on + strand at 786.049 kb on - strand at 786.051 kb on + strand at 786.051 kb on + strand at 786.059 kb on - strand at 786.061 kb on - strand at 786.078 kb on - strand at 786.189 kb on + strand, within PGA1_c07600 at 786.194 kb on + strand, within PGA1_c07600 at 786.197 kb on - strand, within PGA1_c07600 at 786.202 kb on - strand, within PGA1_c07600 at 786.202 kb on - strand, within PGA1_c07600 at 786.202 kb on - strand, within PGA1_c07600 at 786.231 kb on + strand, within PGA1_c07600 at 786.231 kb on + strand, within PGA1_c07600 at 786.235 kb on + strand, within PGA1_c07600 at 786.241 kb on + strand, within PGA1_c07600 at 786.262 kb on + strand, within PGA1_c07600 at 786.270 kb on - strand, within PGA1_c07600 at 786.270 kb on - strand, within PGA1_c07600 at 786.319 kb on + strand, within PGA1_c07600 at 786.324 kb on + strand, within PGA1_c07600 at 786.324 kb on + strand, within PGA1_c07600 at 786.324 kb on + strand, within PGA1_c07600 at 786.327 kb on - strand, within PGA1_c07600 at 786.327 kb on - strand, within PGA1_c07600 at 786.331 kb on + strand, within PGA1_c07600 at 786.332 kb on - strand, within PGA1_c07600 at 786.339 kb on - strand, within PGA1_c07600 at 786.339 kb on - strand, within PGA1_c07600 at 786.359 kb on + strand, within PGA1_c07600 at 786.379 kb on + strand, within PGA1_c07600 at 786.393 kb on - strand, within PGA1_c07600 at 786.434 kb on + strand, within PGA1_c07600 at 786.442 kb on + strand, within PGA1_c07600 at 786.442 kb on + strand, within PGA1_c07600 at 786.442 kb on + strand, within PGA1_c07600 at 786.442 kb on - strand, within PGA1_c07600 at 786.442 kb on - strand, within PGA1_c07600 at 786.450 kb on - strand, within PGA1_c07600 at 786.450 kb on - strand, within PGA1_c07600 at 786.515 kb on + strand at 786.527 kb on - strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.584 kb on - strand at 786.584 kb on - strand at 786.584 kb on - strand at 786.584 kb on - strand at 786.586 kb on + strand at 786.586 kb on + strand at 786.586 kb on + strand at 786.594 kb on - strand at 786.594 kb on - strand at 786.648 kb on - strand at 786.665 kb on - strand at 786.677 kb on + strand at 786.679 kb on - strand at 786.679 kb on - strand at 786.679 kb on - strand at 786.704 kb on - strand at 786.739 kb on - strand at 786.741 kb on + strand at 786.773 kb on + strand at 786.781 kb on - strand at 786.806 kb on + strand, within PGA1_c07610 at 786.809 kb on - strand, within PGA1_c07610 at 787.037 kb on - strand, within PGA1_c07610 at 787.102 kb on - strand, within PGA1_c07610 at 787.127 kb on + strand, within PGA1_c07610 at 787.127 kb on + strand, within PGA1_c07610 at 787.136 kb on + strand, within PGA1_c07610 at 787.136 kb on + strand, within PGA1_c07610 at 787.136 kb on + strand, within PGA1_c07610 at 787.136 kb on + strand, within PGA1_c07610 at 787.144 kb on - strand, within PGA1_c07610 at 787.144 kb on - strand, within PGA1_c07610 at 787.151 kb on + strand, within PGA1_c07610 at 787.151 kb on + strand, within PGA1_c07610 at 787.151 kb on + strand, within PGA1_c07610 at 787.165 kb on - strand, within PGA1_c07610 at 787.174 kb on + strand, within PGA1_c07610 at 787.182 kb on - strand, within PGA1_c07610 at 787.182 kb on - strand, within PGA1_c07610 at 787.189 kb on - strand, within PGA1_c07610 at 787.293 kb on + strand, within PGA1_c07610 at 787.296 kb on - strand, within PGA1_c07610 at 787.303 kb on - strand, within PGA1_c07610 at 787.303 kb on - strand, within PGA1_c07610 at 787.313 kb on - strand, within PGA1_c07610 at 787.365 kb on + strand, within PGA1_c07610 at 787.400 kb on + strand, within PGA1_c07610 at 787.496 kb on + strand, within PGA1_c07610 at 787.504 kb on - strand, within PGA1_c07610 at 787.507 kb on - strand, within PGA1_c07610 at 787.510 kb on + strand, within PGA1_c07610 at 787.518 kb on - strand, within PGA1_c07610 at 787.578 kb on + strand, within PGA1_c07610 at 787.591 kb on + strand, within PGA1_c07610 at 787.671 kb on + strand at 787.679 kb on - strand at 787.679 kb on - strand at 787.686 kb on - strand at 787.758 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.785 kb on - strand at 787.785 kb on - strand at 787.785 kb on - strand at 787.785 kb on - strand at 787.879 kb on + strand at 787.879 kb on + strand at 787.887 kb on - strand at 787.887 kb on - strand at 787.887 kb on - strand at 787.887 kb on - strand at 787.887 kb on - strand at 787.887 kb on - strand at 787.922 kb on - strand at 787.956 kb on - strand at 787.999 kb on - strand at 788.051 kb on + strand at 788.078 kb on - strand at 788.098 kb on + strand at 788.120 kb on + strand at 788.153 kb on - strand at 788.153 kb on - strand at 788.153 kb on - strand at 788.153 kb on - strand at 788.178 kb on + strand, within PGA1_c07620 at 788.218 kb on - strand, within PGA1_c07620 at 788.225 kb on + strand, within PGA1_c07620 at 788.228 kb on - strand, within PGA1_c07620 at 788.228 kb on - strand, within PGA1_c07620 at 788.263 kb on + strand, within PGA1_c07620 at 788.263 kb on + strand, within PGA1_c07620 at 788.271 kb on - strand, within PGA1_c07620 at 788.271 kb on - strand, within PGA1_c07620 at 788.271 kb on - strand, within PGA1_c07620 at 788.271 kb on - strand, within PGA1_c07620 at 788.273 kb on - strand, within PGA1_c07620 at 788.381 kb on + strand, within PGA1_c07620 at 788.505 kb on + strand, within PGA1_c07620 at 788.506 kb on + strand, within PGA1_c07620 at 788.588 kb on + strand, within PGA1_c07620 at 788.596 kb on - strand, within PGA1_c07620 at 788.596 kb on - strand, within PGA1_c07620 at 788.633 kb on + strand, within PGA1_c07620 at 788.634 kb on + strand, within PGA1_c07620 at 788.634 kb on + strand, within PGA1_c07620 at 788.641 kb on - strand, within PGA1_c07620 at 788.642 kb on - strand, within PGA1_c07620 at 788.738 kb on + strand, within PGA1_c07620 at 788.746 kb on - strand, within PGA1_c07620 at 788.762 kb on + strand, within PGA1_c07620
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 785,688 + PGA1_c07590 0.74 +0.2 785,706 + PGA1_c07590 0.75 +0.0 785,714 - PGA1_c07590 0.76 +0.5 785,714 - PGA1_c07590 0.76 +0.1 785,741 + PGA1_c07590 0.78 +0.3 785,757 + PGA1_c07590 0.79 -0.8 785,757 + PGA1_c07590 0.79 +1.0 785,765 - PGA1_c07590 0.80 +0.2 785,805 + PGA1_c07590 0.83 -0.4 785,805 + PGA1_c07590 0.83 +0.8 785,805 + PGA1_c07590 0.83 -0.4 785,805 + PGA1_c07590 0.83 -0.3 785,813 - PGA1_c07590 0.84 +0.3 785,813 - PGA1_c07590 0.84 -0.4 785,813 - PGA1_c07590 0.84 +1.2 785,813 - PGA1_c07590 0.84 +1.4 785,870 + PGA1_c07590 0.88 +0.5 785,911 + -1.1 786,025 + -1.0 786,025 + -0.5 786,025 + +0.3 786,038 - -0.2 786,041 + +0.5 786,049 - -0.3 786,051 + +1.2 786,051 + +1.2 786,059 - +0.1 786,061 - +0.1 786,078 - +1.1 786,189 + PGA1_c07600 0.25 -0.4 786,194 + PGA1_c07600 0.27 +1.3 786,197 - PGA1_c07600 0.27 -1.4 786,202 - PGA1_c07600 0.28 -1.7 786,202 - PGA1_c07600 0.28 -0.5 786,202 - PGA1_c07600 0.28 +0.2 786,231 + PGA1_c07600 0.35 -1.9 786,231 + PGA1_c07600 0.35 +0.7 786,235 + PGA1_c07600 0.36 -0.4 786,241 + PGA1_c07600 0.37 -1.1 786,262 + PGA1_c07600 0.41 -2.0 786,270 - PGA1_c07600 0.43 -2.5 786,270 - PGA1_c07600 0.43 -0.5 786,319 + PGA1_c07600 0.54 -1.1 786,324 + PGA1_c07600 0.55 +1.0 786,324 + PGA1_c07600 0.55 +1.5 786,324 + PGA1_c07600 0.55 +0.7 786,327 - PGA1_c07600 0.56 +0.3 786,327 - PGA1_c07600 0.56 -0.2 786,331 + PGA1_c07600 0.57 -2.9 786,332 - PGA1_c07600 0.57 +0.8 786,339 - PGA1_c07600 0.58 -0.2 786,339 - PGA1_c07600 0.58 +0.3 786,359 + PGA1_c07600 0.63 -1.1 786,379 + PGA1_c07600 0.67 +1.2 786,393 - PGA1_c07600 0.70 +1.5 786,434 + PGA1_c07600 0.79 +0.5 786,442 + PGA1_c07600 0.81 +0.1 786,442 + PGA1_c07600 0.81 +1.5 786,442 + PGA1_c07600 0.81 -0.7 786,442 - PGA1_c07600 0.81 -2.5 786,442 - PGA1_c07600 0.81 -1.0 786,450 - PGA1_c07600 0.83 -0.1 786,450 - PGA1_c07600 0.83 -1.2 786,515 + -0.7 786,527 - +0.3 786,576 + -1.0 786,576 + +1.2 786,576 + -2.4 786,576 + +1.2 786,576 + +2.0 786,576 + -1.1 786,576 + -0.1 786,576 + +0.6 786,576 + +0.3 786,576 + +0.6 786,576 + +0.9 786,576 + -0.2 786,576 + +0.1 786,584 - -1.1 786,584 - -0.5 786,584 - -0.8 786,584 - -2.7 786,586 + +0.5 786,586 + -0.1 786,586 + -0.5 786,594 - -1.0 786,594 - +1.3 786,648 - -0.1 786,665 - +0.7 786,677 + -0.2 786,679 - -1.1 786,679 - +1.6 786,679 - +0.2 786,704 - +0.1 786,739 - +0.2 786,741 + -0.9 786,773 + +0.0 786,781 - +0.3 786,806 + PGA1_c07610 0.12 -0.4 786,809 - PGA1_c07610 0.12 -2.0 787,037 - PGA1_c07610 0.33 -0.5 787,102 - PGA1_c07610 0.39 +0.5 787,127 + PGA1_c07610 0.41 -0.4 787,127 + PGA1_c07610 0.41 -0.5 787,136 + PGA1_c07610 0.42 -2.1 787,136 + PGA1_c07610 0.42 -0.5 787,136 + PGA1_c07610 0.42 -1.0 787,136 + PGA1_c07610 0.42 -1.4 787,144 - PGA1_c07610 0.43 +1.5 787,144 - PGA1_c07610 0.43 -0.2 787,151 + PGA1_c07610 0.43 -1.1 787,151 + PGA1_c07610 0.43 -1.0 787,151 + PGA1_c07610 0.43 -2.1 787,165 - PGA1_c07610 0.45 +0.6 787,174 + PGA1_c07610 0.46 +0.5 787,182 - PGA1_c07610 0.46 -0.7 787,182 - PGA1_c07610 0.46 +0.6 787,189 - PGA1_c07610 0.47 -0.6 787,293 + PGA1_c07610 0.56 -0.1 787,296 - PGA1_c07610 0.57 +0.6 787,303 - PGA1_c07610 0.57 -0.5 787,303 - PGA1_c07610 0.57 +0.3 787,313 - PGA1_c07610 0.58 -0.1 787,365 + PGA1_c07610 0.63 -2.9 787,400 + PGA1_c07610 0.66 -1.7 787,496 + PGA1_c07610 0.75 +0.6 787,504 - PGA1_c07610 0.75 +0.5 787,507 - PGA1_c07610 0.76 +0.5 787,510 + PGA1_c07610 0.76 -1.2 787,518 - PGA1_c07610 0.77 +0.0 787,578 + PGA1_c07610 0.82 +1.0 787,591 + PGA1_c07610 0.83 -1.0 787,671 + +0.1 787,679 - +0.7 787,679 - -0.5 787,686 - +2.3 787,758 + +0.5 787,777 + -0.3 787,777 + +0.1 787,777 + -1.0 787,777 + -0.5 787,777 + -0.5 787,777 + -1.2 787,777 + -0.4 787,785 - +0.7 787,785 - -0.1 787,785 - -0.4 787,785 - +1.0 787,879 + +1.0 787,879 + +1.1 787,887 - -0.4 787,887 - -0.4 787,887 - +0.2 787,887 - +0.2 787,887 - -0.2 787,887 - -0.3 787,922 - +0.9 787,956 - -0.1 787,999 - +0.1 788,051 + -0.8 788,078 - +0.7 788,098 + +0.5 788,120 + -0.3 788,153 - +0.3 788,153 - -0.4 788,153 - +0.3 788,153 - -1.1 788,178 + PGA1_c07620 0.11 -3.1 788,218 - PGA1_c07620 0.12 -0.5 788,225 + PGA1_c07620 0.12 -0.8 788,228 - PGA1_c07620 0.13 -0.8 788,228 - PGA1_c07620 0.13 +0.1 788,263 + PGA1_c07620 0.14 -1.0 788,263 + PGA1_c07620 0.14 -0.6 788,271 - PGA1_c07620 0.14 -0.3 788,271 - PGA1_c07620 0.14 +0.2 788,271 - PGA1_c07620 0.14 -0.5 788,271 - PGA1_c07620 0.14 -0.4 788,273 - PGA1_c07620 0.14 -1.7 788,381 + PGA1_c07620 0.18 -0.4 788,505 + PGA1_c07620 0.23 -0.4 788,506 + PGA1_c07620 0.23 -1.2 788,588 + PGA1_c07620 0.26 -2.5 788,596 - PGA1_c07620 0.26 -1.5 788,596 - PGA1_c07620 0.26 +0.5 788,633 + PGA1_c07620 0.28 -0.7 788,634 + PGA1_c07620 0.28 +0.5 788,634 + PGA1_c07620 0.28 +0.1 788,641 - PGA1_c07620 0.28 +0.6 788,642 - PGA1_c07620 0.28 -2.9 788,738 + PGA1_c07620 0.31 +0.2 788,746 - PGA1_c07620 0.32 -1.3 788,762 + PGA1_c07620 0.32 -0.1
Or see this region's nucleotide sequence