Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07200

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07190 and PGA1_c07200 are separated by 57 nucleotidesPGA1_c07200 and PGA1_c07210 are separated by 12 nucleotidesPGA1_c07210 and PGA1_c07220 overlap by 7 nucleotides PGA1_c07190: PGA1_c07190 - transcriptional regulator, IclR family, at 739,275 to 740,348 _c07190 PGA1_c07200: PGA1_c07200 - phytanoyl-CoA dioxygenase-like protein, at 740,406 to 741,590 _c07200 PGA1_c07210: PGA1_c07210 - inositol 2-dehydrogenase IdhA, at 741,603 to 742,589 _c07210 PGA1_c07220: PGA1_c07220 - 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) (from data), at 742,583 to 743,422 _c07220 Position (kb) 740 741 742Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 739.444 kb on + strand, within PGA1_c07190at 739.452 kb on - strand, within PGA1_c07190at 739.466 kb on - strand, within PGA1_c07190at 739.487 kb on - strand, within PGA1_c07190at 739.493 kb on + strand, within PGA1_c07190at 739.501 kb on + strand, within PGA1_c07190at 739.501 kb on + strand, within PGA1_c07190at 739.501 kb on + strand, within PGA1_c07190at 739.501 kb on + strand, within PGA1_c07190at 739.501 kb on - strand, within PGA1_c07190at 739.509 kb on - strand, within PGA1_c07190at 739.509 kb on - strand, within PGA1_c07190at 739.509 kb on - strand, within PGA1_c07190at 739.509 kb on - strand, within PGA1_c07190at 739.511 kb on - strand, within PGA1_c07190at 739.526 kb on + strand, within PGA1_c07190at 739.569 kb on + strand, within PGA1_c07190at 739.577 kb on - strand, within PGA1_c07190at 739.590 kb on - strand, within PGA1_c07190at 739.605 kb on + strand, within PGA1_c07190at 739.613 kb on - strand, within PGA1_c07190at 739.613 kb on - strand, within PGA1_c07190at 739.695 kb on + strand, within PGA1_c07190at 739.695 kb on + strand, within PGA1_c07190at 739.695 kb on + strand, within PGA1_c07190at 739.695 kb on + strand, within PGA1_c07190at 739.695 kb on + strand, within PGA1_c07190at 739.695 kb on + strand, within PGA1_c07190at 739.695 kb on + strand, within PGA1_c07190at 739.703 kb on - strand, within PGA1_c07190at 739.752 kb on + strand, within PGA1_c07190at 739.912 kb on + strand, within PGA1_c07190at 739.941 kb on + strand, within PGA1_c07190at 739.943 kb on + strand, within PGA1_c07190at 739.945 kb on - strand, within PGA1_c07190at 739.957 kb on - strand, within PGA1_c07190at 739.985 kb on + strand, within PGA1_c07190at 739.985 kb on + strand, within PGA1_c07190at 739.985 kb on + strand, within PGA1_c07190at 739.993 kb on - strand, within PGA1_c07190at 740.045 kb on - strand, within PGA1_c07190at 740.048 kb on + strand, within PGA1_c07190at 740.056 kb on - strand, within PGA1_c07190at 740.056 kb on - strand, within PGA1_c07190at 740.058 kb on + strand, within PGA1_c07190at 740.066 kb on - strand, within PGA1_c07190at 740.216 kb on + strand, within PGA1_c07190at 740.247 kb on + strandat 740.247 kb on + strandat 740.341 kb on + strandat 740.341 kb on + strandat 740.349 kb on + strandat 740.349 kb on - strandat 740.349 kb on - strandat 740.389 kb on + strandat 740.389 kb on + strandat 740.389 kb on + strandat 740.389 kb on + strandat 740.389 kb on + strandat 740.397 kb on - strandat 740.402 kb on - strandat 740.435 kb on + strandat 740.443 kb on - strandat 740.443 kb on - strandat 740.506 kb on + strandat 740.514 kb on + strandat 740.567 kb on + strand, within PGA1_c07200at 740.638 kb on + strand, within PGA1_c07200at 740.724 kb on + strand, within PGA1_c07200at 740.726 kb on + strand, within PGA1_c07200at 740.732 kb on - strand, within PGA1_c07200at 740.739 kb on + strand, within PGA1_c07200at 740.773 kb on + strand, within PGA1_c07200at 740.810 kb on + strand, within PGA1_c07200at 740.810 kb on + strand, within PGA1_c07200at 740.818 kb on - strand, within PGA1_c07200at 740.829 kb on - strand, within PGA1_c07200at 740.894 kb on - strand, within PGA1_c07200at 740.912 kb on + strand, within PGA1_c07200at 741.030 kb on + strand, within PGA1_c07200at 741.038 kb on - strand, within PGA1_c07200at 741.089 kb on - strand, within PGA1_c07200at 741.089 kb on - strand, within PGA1_c07200at 741.118 kb on - strand, within PGA1_c07200at 741.124 kb on + strand, within PGA1_c07200at 741.132 kb on + strand, within PGA1_c07200at 741.132 kb on + strand, within PGA1_c07200at 741.132 kb on + strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.149 kb on + strand, within PGA1_c07200at 741.180 kb on + strand, within PGA1_c07200at 741.180 kb on + strand, within PGA1_c07200at 741.180 kb on + strand, within PGA1_c07200at 741.258 kb on - strand, within PGA1_c07200at 741.269 kb on - strand, within PGA1_c07200at 741.297 kb on + strand, within PGA1_c07200at 741.297 kb on + strand, within PGA1_c07200at 741.305 kb on - strand, within PGA1_c07200at 741.315 kb on - strand, within PGA1_c07200at 741.374 kb on + strand, within PGA1_c07200at 741.407 kb on - strand, within PGA1_c07200at 741.432 kb on - strand, within PGA1_c07200at 741.478 kb on + strandat 741.497 kb on + strandat 741.510 kb on + strandat 741.522 kb on + strandat 741.610 kb on - strandat 741.799 kb on + strand, within PGA1_c07210at 741.823 kb on - strand, within PGA1_c07210at 741.849 kb on + strand, within PGA1_c07210at 741.857 kb on + strand, within PGA1_c07210at 741.865 kb on - strand, within PGA1_c07210at 741.865 kb on - strand, within PGA1_c07210at 741.865 kb on - strand, within PGA1_c07210at 741.865 kb on - strand, within PGA1_c07210at 741.865 kb on - strand, within PGA1_c07210at 741.865 kb on - strand, within PGA1_c07210at 741.865 kb on - strand, within PGA1_c07210at 741.901 kb on - strand, within PGA1_c07210at 741.948 kb on - strand, within PGA1_c07210at 741.961 kb on + strand, within PGA1_c07210at 741.994 kb on + strand, within PGA1_c07210at 742.114 kb on + strand, within PGA1_c07210at 742.124 kb on + strand, within PGA1_c07210at 742.127 kb on + strand, within PGA1_c07210at 742.173 kb on + strand, within PGA1_c07210at 742.230 kb on + strand, within PGA1_c07210at 742.230 kb on + strand, within PGA1_c07210at 742.238 kb on - strand, within PGA1_c07210at 742.252 kb on + strand, within PGA1_c07210at 742.253 kb on + strand, within PGA1_c07210at 742.260 kb on - strand, within PGA1_c07210at 742.266 kb on - strand, within PGA1_c07210at 742.332 kb on - strand, within PGA1_c07210at 742.337 kb on - strand, within PGA1_c07210at 742.424 kb on + strand, within PGA1_c07210at 742.427 kb on - strand, within PGA1_c07210at 742.477 kb on + strand, within PGA1_c07210at 742.540 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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739,444 + PGA1_c07190 0.16 +0.8
739,452 - PGA1_c07190 0.16 -0.4
739,466 - PGA1_c07190 0.18 -0.4
739,487 - PGA1_c07190 0.20 +0.8
739,493 + PGA1_c07190 0.20 -0.6
739,501 + PGA1_c07190 0.21 -0.8
739,501 + PGA1_c07190 0.21 -0.9
739,501 + PGA1_c07190 0.21 +1.2
739,501 + PGA1_c07190 0.21 -0.3
739,501 - PGA1_c07190 0.21 -0.5
739,509 - PGA1_c07190 0.22 -1.1
739,509 - PGA1_c07190 0.22 +0.6
739,509 - PGA1_c07190 0.22 -1.3
739,509 - PGA1_c07190 0.22 +0.9
739,511 - PGA1_c07190 0.22 -2.0
739,526 + PGA1_c07190 0.23 +0.5
739,569 + PGA1_c07190 0.27 -0.4
739,577 - PGA1_c07190 0.28 -0.1
739,590 - PGA1_c07190 0.29 +1.5
739,605 + PGA1_c07190 0.31 -0.7
739,613 - PGA1_c07190 0.31 -2.5
739,613 - PGA1_c07190 0.31 -0.2
739,695 + PGA1_c07190 0.39 -0.7
739,695 + PGA1_c07190 0.39 +0.5
739,695 + PGA1_c07190 0.39 -1.2
739,695 + PGA1_c07190 0.39 -1.9
739,695 + PGA1_c07190 0.39 -0.6
739,695 + PGA1_c07190 0.39 -0.5
739,695 + PGA1_c07190 0.39 -0.3
739,703 - PGA1_c07190 0.40 -1.0
739,752 + PGA1_c07190 0.44 +0.0
739,912 + PGA1_c07190 0.59 -0.3
739,941 + PGA1_c07190 0.62 -2.1
739,943 + PGA1_c07190 0.62 -1.5
739,945 - PGA1_c07190 0.62 +0.1
739,957 - PGA1_c07190 0.64 -0.5
739,985 + PGA1_c07190 0.66 +0.1
739,985 + PGA1_c07190 0.66 +0.6
739,985 + PGA1_c07190 0.66 -1.5
739,993 - PGA1_c07190 0.67 +0.8
740,045 - PGA1_c07190 0.72 +0.2
740,048 + PGA1_c07190 0.72 -0.8
740,056 - PGA1_c07190 0.73 +0.0
740,056 - PGA1_c07190 0.73 +0.2
740,058 + PGA1_c07190 0.73 -1.2
740,066 - PGA1_c07190 0.74 -2.6
740,216 + PGA1_c07190 0.88 -0.1
740,247 + +0.5
740,247 + -0.3
740,341 + -0.5
740,341 + -0.2
740,349 + +0.0
740,349 - -3.4
740,349 - -0.3
740,389 + +0.2
740,389 + +0.4
740,389 + -0.4
740,389 + -2.3
740,389 + -2.7
740,397 - -2.3
740,402 - +0.9
740,435 + -0.3
740,443 - -1.5
740,443 - -0.6
740,506 + -0.4
740,514 + -0.9
740,567 + PGA1_c07200 0.14 -0.0
740,638 + PGA1_c07200 0.20 +0.9
740,724 + PGA1_c07200 0.27 -1.7
740,726 + PGA1_c07200 0.27 +0.3
740,732 - PGA1_c07200 0.28 -0.9
740,739 + PGA1_c07200 0.28 -0.2
740,773 + PGA1_c07200 0.31 -0.3
740,810 + PGA1_c07200 0.34 +0.3
740,810 + PGA1_c07200 0.34 -0.3
740,818 - PGA1_c07200 0.35 -0.5
740,829 - PGA1_c07200 0.36 -0.6
740,894 - PGA1_c07200 0.41 -0.7
740,912 + PGA1_c07200 0.43 -1.9
741,030 + PGA1_c07200 0.53 -1.3
741,038 - PGA1_c07200 0.53 -2.3
741,089 - PGA1_c07200 0.58 +0.7
741,089 - PGA1_c07200 0.58 +0.9
741,118 - PGA1_c07200 0.60 +2.0
741,124 + PGA1_c07200 0.61 -1.3
741,132 + PGA1_c07200 0.61 +0.1
741,132 + PGA1_c07200 0.61 -1.5
741,132 + PGA1_c07200 0.61 -1.1
741,140 - PGA1_c07200 0.62 -2.0
741,140 - PGA1_c07200 0.62 -0.7
741,140 - PGA1_c07200 0.62 +0.4
741,140 - PGA1_c07200 0.62 -0.4
741,140 - PGA1_c07200 0.62 +0.1
741,140 - PGA1_c07200 0.62 +0.2
741,140 - PGA1_c07200 0.62 +0.6
741,140 - PGA1_c07200 0.62 -0.2
741,140 - PGA1_c07200 0.62 -0.8
741,140 - PGA1_c07200 0.62 -0.0
741,149 + PGA1_c07200 0.63 -0.9
741,180 + PGA1_c07200 0.65 -0.5
741,180 + PGA1_c07200 0.65 -1.9
741,180 + PGA1_c07200 0.65 -0.8
741,258 - PGA1_c07200 0.72 +0.5
741,269 - PGA1_c07200 0.73 -0.1
741,297 + PGA1_c07200 0.75 +0.1
741,297 + PGA1_c07200 0.75 -2.5
741,305 - PGA1_c07200 0.76 +0.5
741,315 - PGA1_c07200 0.77 +0.0
741,374 + PGA1_c07200 0.82 +0.1
741,407 - PGA1_c07200 0.84 -0.2
741,432 - PGA1_c07200 0.87 +0.4
741,478 + +0.0
741,497 + -1.3
741,510 + -0.4
741,522 + +0.8
741,610 - -0.2
741,799 + PGA1_c07210 0.20 -0.0
741,823 - PGA1_c07210 0.22 -0.1
741,849 + PGA1_c07210 0.25 -0.4
741,857 + PGA1_c07210 0.26 +2.3
741,865 - PGA1_c07210 0.27 -0.7
741,865 - PGA1_c07210 0.27 -0.4
741,865 - PGA1_c07210 0.27 +0.2
741,865 - PGA1_c07210 0.27 +1.5
741,865 - PGA1_c07210 0.27 -1.2
741,865 - PGA1_c07210 0.27 -0.2
741,865 - PGA1_c07210 0.27 -0.8
741,901 - PGA1_c07210 0.30 -0.4
741,948 - PGA1_c07210 0.35 -1.3
741,961 + PGA1_c07210 0.36 +0.1
741,994 + PGA1_c07210 0.40 -0.2
742,114 + PGA1_c07210 0.52 -2.3
742,124 + PGA1_c07210 0.53 -1.9
742,127 + PGA1_c07210 0.53 +0.5
742,173 + PGA1_c07210 0.58 +0.6
742,230 + PGA1_c07210 0.64 +0.5
742,230 + PGA1_c07210 0.64 +0.3
742,238 - PGA1_c07210 0.64 -1.6
742,252 + PGA1_c07210 0.66 +0.4
742,253 + PGA1_c07210 0.66 -0.4
742,260 - PGA1_c07210 0.67 -0.8
742,266 - PGA1_c07210 0.67 +0.5
742,332 - PGA1_c07210 0.74 -1.8
742,337 - PGA1_c07210 0.74 +0.2
742,424 + PGA1_c07210 0.83 +0.1
742,427 - PGA1_c07210 0.83 -0.0
742,477 + PGA1_c07210 0.89 +1.0
742,540 + +0.3

Or see this region's nucleotide sequence