Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07180 and PGA1_c07190 are separated by 226 nucleotides PGA1_c07190 and PGA1_c07200 are separated by 57 nucleotides
PGA1_c07180: PGA1_c07180 - 2-hydroxy-3-oxopropionate reductase-like protein, at 738,083 to 739,048
_c07180
PGA1_c07190: PGA1_c07190 - transcriptional regulator, IclR family, at 739,275 to 740,348
_c07190
PGA1_c07200: PGA1_c07200 - phytanoyl-CoA dioxygenase-like protein, at 740,406 to 741,590
_c07200
Position (kb) 739
740
741 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 738.324 kb on + strand, within PGA1_c07180 at 738.324 kb on + strand, within PGA1_c07180 at 738.324 kb on + strand, within PGA1_c07180 at 738.324 kb on + strand, within PGA1_c07180 at 738.332 kb on - strand, within PGA1_c07180 at 738.332 kb on - strand, within PGA1_c07180 at 738.332 kb on - strand, within PGA1_c07180 at 738.332 kb on - strand, within PGA1_c07180 at 738.332 kb on - strand, within PGA1_c07180 at 738.332 kb on - strand, within PGA1_c07180 at 738.332 kb on - strand, within PGA1_c07180 at 738.332 kb on - strand, within PGA1_c07180 at 738.334 kb on + strand, within PGA1_c07180 at 738.336 kb on + strand, within PGA1_c07180 at 738.355 kb on + strand, within PGA1_c07180 at 738.363 kb on + strand, within PGA1_c07180 at 738.437 kb on + strand, within PGA1_c07180 at 738.466 kb on + strand, within PGA1_c07180 at 738.469 kb on - strand, within PGA1_c07180 at 738.491 kb on + strand, within PGA1_c07180 at 738.491 kb on + strand, within PGA1_c07180 at 738.509 kb on + strand, within PGA1_c07180 at 738.517 kb on - strand, within PGA1_c07180 at 738.517 kb on - strand, within PGA1_c07180 at 738.559 kb on + strand, within PGA1_c07180 at 738.567 kb on - strand, within PGA1_c07180 at 738.594 kb on - strand, within PGA1_c07180 at 738.632 kb on + strand, within PGA1_c07180 at 738.633 kb on - strand, within PGA1_c07180 at 738.633 kb on - strand, within PGA1_c07180 at 738.656 kb on + strand, within PGA1_c07180 at 738.690 kb on + strand, within PGA1_c07180 at 738.707 kb on + strand, within PGA1_c07180 at 738.715 kb on - strand, within PGA1_c07180 at 738.750 kb on + strand, within PGA1_c07180 at 738.766 kb on + strand, within PGA1_c07180 at 738.786 kb on + strand, within PGA1_c07180 at 738.794 kb on - strand, within PGA1_c07180 at 738.856 kb on + strand, within PGA1_c07180 at 738.861 kb on + strand, within PGA1_c07180 at 738.861 kb on + strand, within PGA1_c07180 at 738.863 kb on + strand, within PGA1_c07180 at 738.928 kb on + strand, within PGA1_c07180 at 738.976 kb on - strand at 738.981 kb on - strand at 738.994 kb on + strand at 738.994 kb on + strand at 739.002 kb on - strand at 739.025 kb on - strand at 739.151 kb on + strand at 739.156 kb on + strand at 739.159 kb on - strand at 739.159 kb on - strand at 739.159 kb on - strand at 739.159 kb on - strand at 739.159 kb on - strand at 739.161 kb on + strand at 739.161 kb on + strand at 739.188 kb on + strand at 739.199 kb on + strand at 739.209 kb on + strand at 739.248 kb on + strand at 739.261 kb on - strand at 739.290 kb on + strand at 739.290 kb on + strand at 739.290 kb on + strand at 739.290 kb on + strand at 739.290 kb on + strand at 739.296 kb on + strand at 739.298 kb on - strand at 739.298 kb on - strand at 739.298 kb on - strand at 739.298 kb on - strand at 739.304 kb on - strand at 739.339 kb on + strand at 739.357 kb on + strand at 739.365 kb on - strand at 739.365 kb on - strand at 739.376 kb on + strand at 739.378 kb on + strand at 739.389 kb on + strand, within PGA1_c07190 at 739.444 kb on + strand, within PGA1_c07190 at 739.452 kb on - strand, within PGA1_c07190 at 739.466 kb on - strand, within PGA1_c07190 at 739.487 kb on - strand, within PGA1_c07190 at 739.493 kb on + strand, within PGA1_c07190 at 739.501 kb on + strand, within PGA1_c07190 at 739.501 kb on + strand, within PGA1_c07190 at 739.501 kb on + strand, within PGA1_c07190 at 739.501 kb on + strand, within PGA1_c07190 at 739.501 kb on - strand, within PGA1_c07190 at 739.509 kb on - strand, within PGA1_c07190 at 739.509 kb on - strand, within PGA1_c07190 at 739.509 kb on - strand, within PGA1_c07190 at 739.509 kb on - strand, within PGA1_c07190 at 739.511 kb on - strand, within PGA1_c07190 at 739.526 kb on + strand, within PGA1_c07190 at 739.569 kb on + strand, within PGA1_c07190 at 739.577 kb on - strand, within PGA1_c07190 at 739.590 kb on - strand, within PGA1_c07190 at 739.605 kb on + strand, within PGA1_c07190 at 739.613 kb on - strand, within PGA1_c07190 at 739.613 kb on - strand, within PGA1_c07190 at 739.695 kb on + strand, within PGA1_c07190 at 739.695 kb on + strand, within PGA1_c07190 at 739.695 kb on + strand, within PGA1_c07190 at 739.695 kb on + strand, within PGA1_c07190 at 739.695 kb on + strand, within PGA1_c07190 at 739.695 kb on + strand, within PGA1_c07190 at 739.695 kb on + strand, within PGA1_c07190 at 739.703 kb on - strand, within PGA1_c07190 at 739.752 kb on + strand, within PGA1_c07190 at 739.912 kb on + strand, within PGA1_c07190 at 739.941 kb on + strand, within PGA1_c07190 at 739.943 kb on + strand, within PGA1_c07190 at 739.945 kb on - strand, within PGA1_c07190 at 739.957 kb on - strand, within PGA1_c07190 at 739.985 kb on + strand, within PGA1_c07190 at 739.985 kb on + strand, within PGA1_c07190 at 739.985 kb on + strand, within PGA1_c07190 at 739.993 kb on - strand, within PGA1_c07190 at 740.045 kb on - strand, within PGA1_c07190 at 740.048 kb on + strand, within PGA1_c07190 at 740.056 kb on - strand, within PGA1_c07190 at 740.056 kb on - strand, within PGA1_c07190 at 740.058 kb on + strand, within PGA1_c07190 at 740.066 kb on - strand, within PGA1_c07190 at 740.216 kb on + strand, within PGA1_c07190 at 740.247 kb on + strand at 740.247 kb on + strand at 740.341 kb on + strand at 740.341 kb on + strand at 740.349 kb on + strand at 740.349 kb on - strand at 740.349 kb on - strand at 740.389 kb on + strand at 740.389 kb on + strand at 740.389 kb on + strand at 740.389 kb on + strand at 740.389 kb on + strand at 740.397 kb on - strand at 740.402 kb on - strand at 740.435 kb on + strand at 740.443 kb on - strand at 740.443 kb on - strand at 740.506 kb on + strand at 740.514 kb on + strand at 740.567 kb on + strand, within PGA1_c07200 at 740.638 kb on + strand, within PGA1_c07200 at 740.724 kb on + strand, within PGA1_c07200 at 740.726 kb on + strand, within PGA1_c07200 at 740.732 kb on - strand, within PGA1_c07200 at 740.739 kb on + strand, within PGA1_c07200 at 740.773 kb on + strand, within PGA1_c07200 at 740.810 kb on + strand, within PGA1_c07200 at 740.810 kb on + strand, within PGA1_c07200 at 740.818 kb on - strand, within PGA1_c07200 at 740.829 kb on - strand, within PGA1_c07200 at 740.894 kb on - strand, within PGA1_c07200 at 740.912 kb on + strand, within PGA1_c07200 at 741.030 kb on + strand, within PGA1_c07200 at 741.038 kb on - strand, within PGA1_c07200 at 741.089 kb on - strand, within PGA1_c07200 at 741.089 kb on - strand, within PGA1_c07200 at 741.118 kb on - strand, within PGA1_c07200 at 741.124 kb on + strand, within PGA1_c07200 at 741.132 kb on + strand, within PGA1_c07200 at 741.132 kb on + strand, within PGA1_c07200 at 741.132 kb on + strand, within PGA1_c07200 at 741.140 kb on - strand, within PGA1_c07200 at 741.140 kb on - strand, within PGA1_c07200 at 741.140 kb on - strand, within PGA1_c07200 at 741.140 kb on - strand, within PGA1_c07200 at 741.140 kb on - strand, within PGA1_c07200 at 741.140 kb on - strand, within PGA1_c07200 at 741.140 kb on - strand, within PGA1_c07200 at 741.140 kb on - strand, within PGA1_c07200 at 741.140 kb on - strand, within PGA1_c07200 at 741.140 kb on - strand, within PGA1_c07200 at 741.149 kb on + strand, within PGA1_c07200 at 741.180 kb on + strand, within PGA1_c07200 at 741.180 kb on + strand, within PGA1_c07200 at 741.180 kb on + strand, within PGA1_c07200 at 741.258 kb on - strand, within PGA1_c07200 at 741.269 kb on - strand, within PGA1_c07200 at 741.297 kb on + strand, within PGA1_c07200 at 741.297 kb on + strand, within PGA1_c07200 at 741.305 kb on - strand, within PGA1_c07200 at 741.315 kb on - strand, within PGA1_c07200
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 738,324 + PGA1_c07180 0.25 +1.1 738,324 + PGA1_c07180 0.25 +0.0 738,324 + PGA1_c07180 0.25 -0.5 738,324 + PGA1_c07180 0.25 -0.0 738,332 - PGA1_c07180 0.26 -1.9 738,332 - PGA1_c07180 0.26 +0.1 738,332 - PGA1_c07180 0.26 -0.5 738,332 - PGA1_c07180 0.26 -0.2 738,332 - PGA1_c07180 0.26 +0.2 738,332 - PGA1_c07180 0.26 -0.1 738,332 - PGA1_c07180 0.26 +0.1 738,332 - PGA1_c07180 0.26 +0.7 738,334 + PGA1_c07180 0.26 +0.2 738,336 + PGA1_c07180 0.26 -0.8 738,355 + PGA1_c07180 0.28 +1.2 738,363 + PGA1_c07180 0.29 -1.0 738,437 + PGA1_c07180 0.37 -1.3 738,466 + PGA1_c07180 0.40 +1.1 738,469 - PGA1_c07180 0.40 -1.3 738,491 + PGA1_c07180 0.42 +1.2 738,491 + PGA1_c07180 0.42 -0.2 738,509 + PGA1_c07180 0.44 -0.6 738,517 - PGA1_c07180 0.45 -0.1 738,517 - PGA1_c07180 0.45 +0.2 738,559 + PGA1_c07180 0.49 +0.5 738,567 - PGA1_c07180 0.50 +0.8 738,594 - PGA1_c07180 0.53 +0.0 738,632 + PGA1_c07180 0.57 +0.1 738,633 - PGA1_c07180 0.57 -0.9 738,633 - PGA1_c07180 0.57 +0.5 738,656 + PGA1_c07180 0.59 -2.1 738,690 + PGA1_c07180 0.63 -1.8 738,707 + PGA1_c07180 0.65 -0.2 738,715 - PGA1_c07180 0.65 +0.8 738,750 + PGA1_c07180 0.69 +0.1 738,766 + PGA1_c07180 0.71 +0.7 738,786 + PGA1_c07180 0.73 -0.8 738,794 - PGA1_c07180 0.74 +0.2 738,856 + PGA1_c07180 0.80 -0.4 738,861 + PGA1_c07180 0.81 +1.2 738,861 + PGA1_c07180 0.81 -0.9 738,863 + PGA1_c07180 0.81 +0.4 738,928 + PGA1_c07180 0.87 +0.1 738,976 - -0.5 738,981 - -0.2 738,994 + -2.1 738,994 + -0.1 739,002 - +1.7 739,025 - -0.1 739,151 + -0.7 739,156 + +0.7 739,159 - +0.1 739,159 - -0.4 739,159 - +0.5 739,159 - +0.8 739,159 - -3.3 739,161 + -0.5 739,161 + -1.0 739,188 + +0.3 739,199 + -0.8 739,209 + +0.4 739,248 + +0.0 739,261 - +0.5 739,290 + -0.9 739,290 + -1.7 739,290 + -2.0 739,290 + +0.6 739,290 + -0.8 739,296 + +0.4 739,298 - +2.6 739,298 - -2.6 739,298 - -0.5 739,298 - -0.0 739,304 - +0.7 739,339 + -1.9 739,357 + +0.3 739,365 - +0.0 739,365 - -1.1 739,376 + +0.5 739,378 + -0.6 739,389 + PGA1_c07190 0.11 -1.7 739,444 + PGA1_c07190 0.16 +0.8 739,452 - PGA1_c07190 0.16 -0.4 739,466 - PGA1_c07190 0.18 -0.4 739,487 - PGA1_c07190 0.20 +0.8 739,493 + PGA1_c07190 0.20 -0.6 739,501 + PGA1_c07190 0.21 -0.8 739,501 + PGA1_c07190 0.21 -0.9 739,501 + PGA1_c07190 0.21 +1.2 739,501 + PGA1_c07190 0.21 -0.3 739,501 - PGA1_c07190 0.21 -0.5 739,509 - PGA1_c07190 0.22 -1.1 739,509 - PGA1_c07190 0.22 +0.6 739,509 - PGA1_c07190 0.22 -1.3 739,509 - PGA1_c07190 0.22 +0.9 739,511 - PGA1_c07190 0.22 -2.0 739,526 + PGA1_c07190 0.23 +0.5 739,569 + PGA1_c07190 0.27 -0.4 739,577 - PGA1_c07190 0.28 -0.1 739,590 - PGA1_c07190 0.29 +1.5 739,605 + PGA1_c07190 0.31 -0.7 739,613 - PGA1_c07190 0.31 -2.5 739,613 - PGA1_c07190 0.31 -0.2 739,695 + PGA1_c07190 0.39 -0.7 739,695 + PGA1_c07190 0.39 +0.5 739,695 + PGA1_c07190 0.39 -1.2 739,695 + PGA1_c07190 0.39 -1.9 739,695 + PGA1_c07190 0.39 -0.6 739,695 + PGA1_c07190 0.39 -0.5 739,695 + PGA1_c07190 0.39 -0.3 739,703 - PGA1_c07190 0.40 -1.0 739,752 + PGA1_c07190 0.44 +0.0 739,912 + PGA1_c07190 0.59 -0.3 739,941 + PGA1_c07190 0.62 -2.1 739,943 + PGA1_c07190 0.62 -1.5 739,945 - PGA1_c07190 0.62 +0.1 739,957 - PGA1_c07190 0.64 -0.5 739,985 + PGA1_c07190 0.66 +0.1 739,985 + PGA1_c07190 0.66 +0.6 739,985 + PGA1_c07190 0.66 -1.5 739,993 - PGA1_c07190 0.67 +0.8 740,045 - PGA1_c07190 0.72 +0.2 740,048 + PGA1_c07190 0.72 -0.8 740,056 - PGA1_c07190 0.73 +0.0 740,056 - PGA1_c07190 0.73 +0.2 740,058 + PGA1_c07190 0.73 -1.2 740,066 - PGA1_c07190 0.74 -2.6 740,216 + PGA1_c07190 0.88 -0.1 740,247 + +0.5 740,247 + -0.3 740,341 + -0.5 740,341 + -0.2 740,349 + +0.0 740,349 - -3.4 740,349 - -0.3 740,389 + +0.2 740,389 + +0.4 740,389 + -0.4 740,389 + -2.3 740,389 + -2.7 740,397 - -2.3 740,402 - +0.9 740,435 + -0.3 740,443 - -1.5 740,443 - -0.6 740,506 + -0.4 740,514 + -0.9 740,567 + PGA1_c07200 0.14 -0.0 740,638 + PGA1_c07200 0.20 +0.9 740,724 + PGA1_c07200 0.27 -1.7 740,726 + PGA1_c07200 0.27 +0.3 740,732 - PGA1_c07200 0.28 -0.9 740,739 + PGA1_c07200 0.28 -0.2 740,773 + PGA1_c07200 0.31 -0.3 740,810 + PGA1_c07200 0.34 +0.3 740,810 + PGA1_c07200 0.34 -0.3 740,818 - PGA1_c07200 0.35 -0.5 740,829 - PGA1_c07200 0.36 -0.6 740,894 - PGA1_c07200 0.41 -0.7 740,912 + PGA1_c07200 0.43 -1.9 741,030 + PGA1_c07200 0.53 -1.3 741,038 - PGA1_c07200 0.53 -2.3 741,089 - PGA1_c07200 0.58 +0.7 741,089 - PGA1_c07200 0.58 +0.9 741,118 - PGA1_c07200 0.60 +2.0 741,124 + PGA1_c07200 0.61 -1.3 741,132 + PGA1_c07200 0.61 +0.1 741,132 + PGA1_c07200 0.61 -1.5 741,132 + PGA1_c07200 0.61 -1.1 741,140 - PGA1_c07200 0.62 -2.0 741,140 - PGA1_c07200 0.62 -0.7 741,140 - PGA1_c07200 0.62 +0.4 741,140 - PGA1_c07200 0.62 -0.4 741,140 - PGA1_c07200 0.62 +0.1 741,140 - PGA1_c07200 0.62 +0.2 741,140 - PGA1_c07200 0.62 +0.6 741,140 - PGA1_c07200 0.62 -0.2 741,140 - PGA1_c07200 0.62 -0.8 741,140 - PGA1_c07200 0.62 -0.0 741,149 + PGA1_c07200 0.63 -0.9 741,180 + PGA1_c07200 0.65 -0.5 741,180 + PGA1_c07200 0.65 -1.9 741,180 + PGA1_c07200 0.65 -0.8 741,258 - PGA1_c07200 0.72 +0.5 741,269 - PGA1_c07200 0.73 -0.1 741,297 + PGA1_c07200 0.75 +0.1 741,297 + PGA1_c07200 0.75 -2.5 741,305 - PGA1_c07200 0.76 +0.5 741,315 - PGA1_c07200 0.77 +0.0
Or see this region's nucleotide sequence