Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07000

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06970 and PGA1_c06980 are separated by 35 nucleotidesPGA1_c06980 and PGA1_c06990 are separated by 187 nucleotidesPGA1_c06990 and PGA1_c07000 are separated by 15 nucleotidesPGA1_c07000 and PGA1_c07010 are separated by 234 nucleotides PGA1_c06970: PGA1_c06970 - pyruvate kinase PykA, at 716,845 to 718,290 _c06970 PGA1_c06980: PGA1_c06980 - hypothetical protein, at 718,326 to 718,547 _c06980 PGA1_c06990: PGA1_c06990 - 50S ribosomal protein L35, at 718,735 to 718,935 _c06990 PGA1_c07000: PGA1_c07000 - 50S ribosomal protein L20, at 718,951 to 719,316 _c07000 PGA1_c07010: PGA1_c07010 - phenylalanyl-tRNA synthetase alpha chain, at 719,551 to 720,624 _c07010 Position (kb) 718 719 720Strain fitness (log2 ratio) -1 0 1at 718.282 kb on - strandat 718.367 kb on - strand, within PGA1_c06980at 718.457 kb on + strand, within PGA1_c06980at 718.460 kb on + strand, within PGA1_c06980at 718.535 kb on - strandat 718.576 kb on + strandat 718.586 kb on + strandat 719.509 kb on + strandat 719.536 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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718,282 - -0.0
718,367 - PGA1_c06980 0.18 +1.3
718,457 + PGA1_c06980 0.59 +0.3
718,460 + PGA1_c06980 0.60 +1.1
718,535 - -0.7
718,576 + +0.8
718,586 + -1.5
719,509 + -0.3
719,536 + -0.5

Or see this region's nucleotide sequence