Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05550 and PGA1_c05560 are separated by 623 nucleotides
PGA1_c05550: PGA1_c05550 - glutamine synthase-like protein, at 567,125 to 568,576
_c05550
PGA1_c05560: PGA1_c05560 - glycine cleavage system protein GcvH, at 569,200 to 569,562
_c05560
Position (kb) 569
570 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 568.242 kb on - strand, within PGA1_c05550 at 568.277 kb on + strand, within PGA1_c05550 at 568.321 kb on - strand, within PGA1_c05550 at 568.321 kb on - strand, within PGA1_c05550 at 568.418 kb on + strand, within PGA1_c05550 at 568.440 kb on - strand at 568.446 kb on - strand at 568.464 kb on + strand at 568.466 kb on + strand at 568.474 kb on + strand at 568.487 kb on + strand at 568.496 kb on - strand at 568.501 kb on + strand at 568.504 kb on - strand at 568.507 kb on + strand at 568.515 kb on - strand at 568.515 kb on - strand at 568.533 kb on + strand at 568.541 kb on - strand at 568.776 kb on + strand at 568.783 kb on + strand at 568.790 kb on - strand at 568.808 kb on + strand at 568.829 kb on + strand at 568.837 kb on - strand at 568.845 kb on + strand at 568.874 kb on - strand at 568.892 kb on + strand at 568.892 kb on + strand at 568.900 kb on - strand at 568.931 kb on + strand at 568.999 kb on - strand at 569.044 kb on + strand at 569.044 kb on + strand at 569.044 kb on + strand at 569.044 kb on + strand at 569.049 kb on + strand at 569.049 kb on + strand at 569.052 kb on - strand at 569.054 kb on + strand at 569.057 kb on - strand at 569.068 kb on + strand at 569.073 kb on + strand at 569.076 kb on - strand at 569.081 kb on - strand at 569.147 kb on + strand at 569.324 kb on + strand, within PGA1_c05560 at 569.366 kb on - strand, within PGA1_c05560 at 569.375 kb on - strand, within PGA1_c05560 at 569.469 kb on - strand, within PGA1_c05560 at 569.490 kb on + strand, within PGA1_c05560 at 569.498 kb on - strand, within PGA1_c05560 at 569.506 kb on - strand, within PGA1_c05560 at 569.573 kb on - strand at 569.652 kb on - strand at 569.739 kb on - strand at 569.880 kb on - strand at 569.964 kb on + strand at 569.972 kb on - strand at 570.030 kb on - strand at 570.034 kb on + strand at 570.041 kb on + strand at 570.071 kb on + strand at 570.071 kb on + strand at 570.076 kb on - strand at 570.079 kb on - strand at 570.171 kb on + strand at 570.236 kb on + strand at 570.249 kb on - strand at 570.285 kb on - strand at 570.308 kb on - strand at 570.331 kb on - strand at 570.331 kb on - strand at 570.331 kb on - strand at 570.418 kb on - strand at 570.420 kb on - strand at 570.420 kb on - strand at 570.420 kb on - strand at 570.505 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 568,242 - PGA1_c05550 0.77 +0.3 568,277 + PGA1_c05550 0.79 +0.2 568,321 - PGA1_c05550 0.82 -0.4 568,321 - PGA1_c05550 0.82 +2.7 568,418 + PGA1_c05550 0.89 -1.7 568,440 - +1.8 568,446 - +0.3 568,464 + -0.3 568,466 + +0.2 568,474 + +0.6 568,487 + -0.3 568,496 - +2.6 568,501 + -0.3 568,504 - -2.4 568,507 + -0.4 568,515 - +0.2 568,515 - +1.3 568,533 + -1.4 568,541 - +1.6 568,776 + +1.9 568,783 + +2.9 568,790 - +0.5 568,808 + +0.9 568,829 + +2.0 568,837 - +1.1 568,845 + -1.0 568,874 - +0.6 568,892 + +1.3 568,892 + -1.5 568,900 - +0.6 568,931 + -0.8 568,999 - -0.8 569,044 + -0.0 569,044 + +0.6 569,044 + +0.7 569,044 + +0.1 569,049 + -0.2 569,049 + +2.6 569,052 - +0.8 569,054 + +0.4 569,057 - +0.6 569,068 + +0.3 569,073 + +1.7 569,076 - +0.6 569,081 - +0.7 569,147 + +1.1 569,324 + PGA1_c05560 0.34 +0.3 569,366 - PGA1_c05560 0.46 +1.6 569,375 - PGA1_c05560 0.48 -0.7 569,469 - PGA1_c05560 0.74 +0.9 569,490 + PGA1_c05560 0.80 -0.0 569,498 - PGA1_c05560 0.82 +3.0 569,506 - PGA1_c05560 0.84 +1.1 569,573 - -1.4 569,652 - +0.9 569,739 - +0.6 569,880 - -2.1 569,964 + -0.0 569,972 - +0.3 570,030 - +0.5 570,034 + +1.0 570,041 + -1.4 570,071 + -2.0 570,071 + -0.1 570,076 - +2.8 570,079 - +1.4 570,171 + +0.1 570,236 + +0.7 570,249 - +0.8 570,285 - +1.0 570,308 - +2.8 570,331 - +1.2 570,331 - +1.2 570,331 - -1.0 570,418 - +1.2 570,420 - -1.4 570,420 - +0.8 570,420 - -0.3 570,505 + -0.4
Or see this region's nucleotide sequence