Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04660 and PGA1_c04670 are separated by 235 nucleotides PGA1_c04670 and PGA1_c04680 are separated by 5 nucleotides PGA1_c04680 and PGA1_c04690 are separated by 125 nucleotides PGA1_c04690 and PGA1_c04700 are separated by 39 nucleotides
PGA1_c04660: PGA1_c04660 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase FabA, at 459,031 to 459,540
_c04660
PGA1_c04670: PGA1_c04670 - putative metal ion uptake regulator, at 459,776 to 460,192
_c04670
PGA1_c04680: PGA1_c04680 - transcriptional regulator, LysR family, at 460,198 to 461,106
_c04680
PGA1_c04690: PGA1_c04690 - putative phytanoyl-CoA dioxygenase, at 461,232 to 462,029
_c04690
PGA1_c04700: PGA1_c04700 - hypothetical protein, at 462,069 to 463,013
_c04700
Position (kb) 460
461
462 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 459.615 kb on + strand at 459.615 kb on - strand at 459.623 kb on - strand at 459.624 kb on - strand at 459.648 kb on + strand at 459.654 kb on + strand at 459.671 kb on + strand at 459.687 kb on - strand at 459.728 kb on - strand at 459.736 kb on - strand at 459.760 kb on + strand at 459.760 kb on + strand at 459.763 kb on - strand at 459.768 kb on - strand at 459.768 kb on - strand at 459.768 kb on - strand at 459.768 kb on - strand at 459.781 kb on + strand at 459.786 kb on + strand at 459.839 kb on + strand, within PGA1_c04670 at 459.846 kb on + strand, within PGA1_c04670 at 459.847 kb on - strand, within PGA1_c04670 at 459.925 kb on + strand, within PGA1_c04670 at 459.925 kb on + strand, within PGA1_c04670 at 459.925 kb on + strand, within PGA1_c04670 at 459.933 kb on - strand, within PGA1_c04670 at 459.934 kb on - strand, within PGA1_c04670 at 459.984 kb on + strand, within PGA1_c04670 at 460.041 kb on + strand, within PGA1_c04670 at 460.060 kb on + strand, within PGA1_c04670 at 460.068 kb on - strand, within PGA1_c04670 at 460.081 kb on - strand, within PGA1_c04670 at 460.081 kb on - strand, within PGA1_c04670 at 460.180 kb on + strand at 460.186 kb on + strand at 460.254 kb on + strand at 460.254 kb on + strand at 460.264 kb on + strand at 460.272 kb on - strand at 460.274 kb on + strand at 460.274 kb on + strand at 460.282 kb on - strand at 460.282 kb on - strand at 460.282 kb on - strand at 460.293 kb on + strand, within PGA1_c04680 at 460.293 kb on + strand, within PGA1_c04680 at 460.293 kb on + strand, within PGA1_c04680 at 460.313 kb on + strand, within PGA1_c04680 at 460.316 kb on - strand, within PGA1_c04680 at 460.336 kb on + strand, within PGA1_c04680 at 460.350 kb on - strand, within PGA1_c04680 at 460.386 kb on - strand, within PGA1_c04680 at 460.391 kb on - strand, within PGA1_c04680 at 460.392 kb on - strand, within PGA1_c04680 at 460.428 kb on + strand, within PGA1_c04680 at 460.428 kb on - strand, within PGA1_c04680 at 460.454 kb on + strand, within PGA1_c04680 at 460.474 kb on - strand, within PGA1_c04680 at 460.474 kb on - strand, within PGA1_c04680 at 460.475 kb on + strand, within PGA1_c04680 at 460.475 kb on + strand, within PGA1_c04680 at 460.483 kb on - strand, within PGA1_c04680 at 460.493 kb on - strand, within PGA1_c04680 at 460.564 kb on + strand, within PGA1_c04680 at 460.572 kb on - strand, within PGA1_c04680 at 460.596 kb on + strand, within PGA1_c04680 at 460.599 kb on + strand, within PGA1_c04680 at 460.656 kb on + strand, within PGA1_c04680 at 460.664 kb on - strand, within PGA1_c04680 at 460.745 kb on + strand, within PGA1_c04680 at 460.752 kb on + strand, within PGA1_c04680 at 460.765 kb on + strand, within PGA1_c04680 at 460.773 kb on - strand, within PGA1_c04680 at 460.825 kb on + strand, within PGA1_c04680 at 460.857 kb on - strand, within PGA1_c04680 at 460.874 kb on - strand, within PGA1_c04680 at 460.899 kb on + strand, within PGA1_c04680 at 460.907 kb on - strand, within PGA1_c04680 at 460.922 kb on - strand, within PGA1_c04680 at 460.971 kb on + strand, within PGA1_c04680 at 460.974 kb on - strand, within PGA1_c04680 at 460.976 kb on + strand, within PGA1_c04680 at 460.984 kb on - strand, within PGA1_c04680 at 460.984 kb on - strand, within PGA1_c04680 at 460.994 kb on + strand, within PGA1_c04680 at 460.999 kb on + strand, within PGA1_c04680 at 461.002 kb on - strand, within PGA1_c04680 at 461.002 kb on - strand, within PGA1_c04680 at 461.004 kb on + strand, within PGA1_c04680 at 461.004 kb on + strand, within PGA1_c04680 at 461.039 kb on + strand at 461.039 kb on + strand at 461.047 kb on - strand at 461.048 kb on + strand at 461.048 kb on + strand at 461.056 kb on - strand at 461.056 kb on - strand at 461.058 kb on - strand at 461.066 kb on - strand at 461.071 kb on + strand at 461.091 kb on + strand at 461.151 kb on + strand at 461.152 kb on - strand at 461.164 kb on - strand at 461.236 kb on - strand at 461.289 kb on + strand at 461.289 kb on + strand at 461.289 kb on + strand at 461.297 kb on - strand at 461.348 kb on - strand, within PGA1_c04690 at 461.366 kb on + strand, within PGA1_c04690 at 461.435 kb on - strand, within PGA1_c04690 at 461.437 kb on + strand, within PGA1_c04690 at 461.443 kb on - strand, within PGA1_c04690 at 461.466 kb on + strand, within PGA1_c04690 at 461.478 kb on + strand, within PGA1_c04690 at 461.493 kb on + strand, within PGA1_c04690 at 461.501 kb on - strand, within PGA1_c04690 at 461.543 kb on - strand, within PGA1_c04690 at 461.557 kb on + strand, within PGA1_c04690 at 461.557 kb on + strand, within PGA1_c04690 at 461.615 kb on + strand, within PGA1_c04690 at 461.643 kb on - strand, within PGA1_c04690 at 461.676 kb on - strand, within PGA1_c04690 at 461.687 kb on - strand, within PGA1_c04690 at 461.710 kb on + strand, within PGA1_c04690 at 461.718 kb on - strand, within PGA1_c04690 at 461.722 kb on + strand, within PGA1_c04690 at 461.748 kb on + strand, within PGA1_c04690 at 461.748 kb on + strand, within PGA1_c04690 at 461.748 kb on + strand, within PGA1_c04690 at 461.753 kb on + strand, within PGA1_c04690 at 461.756 kb on - strand, within PGA1_c04690 at 461.756 kb on - strand, within PGA1_c04690 at 461.756 kb on - strand, within PGA1_c04690 at 461.847 kb on - strand, within PGA1_c04690 at 461.900 kb on + strand, within PGA1_c04690 at 461.911 kb on + strand, within PGA1_c04690 at 461.926 kb on + strand, within PGA1_c04690 at 461.926 kb on + strand, within PGA1_c04690 at 461.934 kb on - strand, within PGA1_c04690 at 461.944 kb on - strand, within PGA1_c04690 at 461.944 kb on - strand, within PGA1_c04690 at 461.983 kb on - strand at 461.985 kb on - strand at 462.032 kb on + strand at 462.059 kb on + strand at 462.067 kb on - strand at 462.085 kb on + strand at 462.085 kb on + strand at 462.093 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 459,615 + +0.1 459,615 - -0.8 459,623 - +0.3 459,624 - +0.9 459,648 + +0.7 459,654 + +0.2 459,671 + -1.4 459,687 - -1.5 459,728 - +0.2 459,736 - +0.0 459,760 + -3.5 459,760 + -0.7 459,763 - -1.0 459,768 - -0.2 459,768 - +0.6 459,768 - -0.8 459,768 - +0.2 459,781 + +0.7 459,786 + -2.3 459,839 + PGA1_c04670 0.15 -0.3 459,846 + PGA1_c04670 0.17 +0.6 459,847 - PGA1_c04670 0.17 -1.2 459,925 + PGA1_c04670 0.36 -0.1 459,925 + PGA1_c04670 0.36 -0.2 459,925 + PGA1_c04670 0.36 -2.6 459,933 - PGA1_c04670 0.38 -1.8 459,934 - PGA1_c04670 0.38 +0.9 459,984 + PGA1_c04670 0.50 -0.6 460,041 + PGA1_c04670 0.64 +0.0 460,060 + PGA1_c04670 0.68 -1.4 460,068 - PGA1_c04670 0.70 +0.6 460,081 - PGA1_c04670 0.73 +0.1 460,081 - PGA1_c04670 0.73 +1.4 460,180 + -0.2 460,186 + -1.6 460,254 + -2.7 460,254 + -1.2 460,264 + +0.3 460,272 - +0.4 460,274 + -0.4 460,274 + -0.7 460,282 - -2.0 460,282 - -0.4 460,282 - -0.6 460,293 + PGA1_c04680 0.10 -0.4 460,293 + PGA1_c04680 0.10 +0.5 460,293 + PGA1_c04680 0.10 -1.0 460,313 + PGA1_c04680 0.13 +1.0 460,316 - PGA1_c04680 0.13 +0.2 460,336 + PGA1_c04680 0.15 -0.3 460,350 - PGA1_c04680 0.17 -2.0 460,386 - PGA1_c04680 0.21 -1.1 460,391 - PGA1_c04680 0.21 -1.2 460,392 - PGA1_c04680 0.21 -0.3 460,428 + PGA1_c04680 0.25 +0.6 460,428 - PGA1_c04680 0.25 +1.2 460,454 + PGA1_c04680 0.28 +0.4 460,474 - PGA1_c04680 0.30 -0.6 460,474 - PGA1_c04680 0.30 +0.1 460,475 + PGA1_c04680 0.30 -1.5 460,475 + PGA1_c04680 0.30 -0.1 460,483 - PGA1_c04680 0.31 +0.2 460,493 - PGA1_c04680 0.32 -0.5 460,564 + PGA1_c04680 0.40 -1.1 460,572 - PGA1_c04680 0.41 +0.5 460,596 + PGA1_c04680 0.44 -0.3 460,599 + PGA1_c04680 0.44 -1.8 460,656 + PGA1_c04680 0.50 -2.2 460,664 - PGA1_c04680 0.51 +0.5 460,745 + PGA1_c04680 0.60 +0.8 460,752 + PGA1_c04680 0.61 -2.3 460,765 + PGA1_c04680 0.62 -0.1 460,773 - PGA1_c04680 0.63 +0.4 460,825 + PGA1_c04680 0.69 -0.1 460,857 - PGA1_c04680 0.72 -1.1 460,874 - PGA1_c04680 0.74 -0.7 460,899 + PGA1_c04680 0.77 -2.6 460,907 - PGA1_c04680 0.78 +0.1 460,922 - PGA1_c04680 0.80 -0.3 460,971 + PGA1_c04680 0.85 -1.0 460,974 - PGA1_c04680 0.85 -1.7 460,976 + PGA1_c04680 0.86 +0.7 460,984 - PGA1_c04680 0.86 -0.2 460,984 - PGA1_c04680 0.86 -1.4 460,994 + PGA1_c04680 0.88 +0.3 460,999 + PGA1_c04680 0.88 +0.7 461,002 - PGA1_c04680 0.88 +0.0 461,002 - PGA1_c04680 0.88 -0.6 461,004 + PGA1_c04680 0.89 -2.0 461,004 + PGA1_c04680 0.89 +1.3 461,039 + +2.9 461,039 + -0.6 461,047 - +0.6 461,048 + +2.9 461,048 + -0.3 461,056 - -1.4 461,056 - +0.2 461,058 - -1.1 461,066 - -0.4 461,071 + -1.2 461,091 + +0.1 461,151 + -0.2 461,152 - -1.2 461,164 - +0.7 461,236 - +0.9 461,289 + -1.2 461,289 + +0.0 461,289 + -1.0 461,297 - +0.2 461,348 - PGA1_c04690 0.15 -0.3 461,366 + PGA1_c04690 0.17 +0.0 461,435 - PGA1_c04690 0.25 +0.1 461,437 + PGA1_c04690 0.26 +0.1 461,443 - PGA1_c04690 0.26 -0.8 461,466 + PGA1_c04690 0.29 -1.3 461,478 + PGA1_c04690 0.31 -0.3 461,493 + PGA1_c04690 0.33 -0.3 461,501 - PGA1_c04690 0.34 -0.2 461,543 - PGA1_c04690 0.39 -0.8 461,557 + PGA1_c04690 0.41 -1.1 461,557 + PGA1_c04690 0.41 -0.0 461,615 + PGA1_c04690 0.48 -0.6 461,643 - PGA1_c04690 0.52 -0.6 461,676 - PGA1_c04690 0.56 -1.0 461,687 - PGA1_c04690 0.57 -0.9 461,710 + PGA1_c04690 0.60 +0.4 461,718 - PGA1_c04690 0.61 -2.4 461,722 + PGA1_c04690 0.61 +0.4 461,748 + PGA1_c04690 0.65 +0.4 461,748 + PGA1_c04690 0.65 +0.2 461,748 + PGA1_c04690 0.65 -2.2 461,753 + PGA1_c04690 0.65 -0.6 461,756 - PGA1_c04690 0.66 -0.8 461,756 - PGA1_c04690 0.66 -2.6 461,756 - PGA1_c04690 0.66 -0.3 461,847 - PGA1_c04690 0.77 +0.9 461,900 + PGA1_c04690 0.84 +0.7 461,911 + PGA1_c04690 0.85 +1.4 461,926 + PGA1_c04690 0.87 -0.5 461,926 + PGA1_c04690 0.87 -0.7 461,934 - PGA1_c04690 0.88 -1.6 461,944 - PGA1_c04690 0.89 -2.9 461,944 - PGA1_c04690 0.89 -0.5 461,983 - -1.0 461,985 - -1.7 462,032 + -1.1 462,059 + -0.8 462,067 - -0.0 462,085 + +0.9 462,085 + +0.9 462,093 - -0.6
Or see this region's nucleotide sequence