Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01810 and PGA1_262p01820 overlap by 4 nucleotides PGA1_262p01820 and PGA1_262p01830 are separated by 551 nucleotides
PGA1_262p01810: PGA1_262p01810 - hypothetical protein, at 198,551 to 200,254
_262p01810
PGA1_262p01820: PGA1_262p01820 - Protein of unknown function (DUF3726)., at 200,251 to 200,901
_262p01820
PGA1_262p01830: PGA1_262p01830 - putative aminomethyltransferase, at 201,453 to 202,559
_262p01830
Position (kb) 200
201 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 199.280 kb on - strand, within PGA1_262p01810 at 199.280 kb on - strand, within PGA1_262p01810 at 199.280 kb on - strand, within PGA1_262p01810 at 199.440 kb on - strand, within PGA1_262p01810 at 199.475 kb on + strand, within PGA1_262p01810 at 199.478 kb on - strand, within PGA1_262p01810 at 199.484 kb on - strand, within PGA1_262p01810 at 199.488 kb on - strand, within PGA1_262p01810 at 199.541 kb on + strand, within PGA1_262p01810 at 199.541 kb on + strand, within PGA1_262p01810 at 199.544 kb on - strand, within PGA1_262p01810 at 199.586 kb on - strand, within PGA1_262p01810 at 199.791 kb on + strand, within PGA1_262p01810 at 199.962 kb on + strand, within PGA1_262p01810 at 200.067 kb on + strand, within PGA1_262p01810 at 200.067 kb on + strand, within PGA1_262p01810 at 200.075 kb on - strand, within PGA1_262p01810 at 200.075 kb on - strand, within PGA1_262p01810 at 200.075 kb on - strand, within PGA1_262p01810 at 200.075 kb on - strand, within PGA1_262p01810 at 200.075 kb on - strand, within PGA1_262p01810 at 200.075 kb on - strand, within PGA1_262p01810 at 200.081 kb on + strand, within PGA1_262p01810 at 200.185 kb on + strand at 200.308 kb on + strand at 200.313 kb on + strand at 200.321 kb on - strand, within PGA1_262p01820 at 200.418 kb on + strand, within PGA1_262p01820 at 200.433 kb on + strand, within PGA1_262p01820 at 200.737 kb on - strand, within PGA1_262p01820 at 200.761 kb on + strand, within PGA1_262p01820 at 200.761 kb on + strand, within PGA1_262p01820 at 200.773 kb on + strand, within PGA1_262p01820 at 200.786 kb on - strand, within PGA1_262p01820 at 200.872 kb on - strand at 200.905 kb on + strand at 200.905 kb on + strand at 200.905 kb on + strand at 200.913 kb on - strand at 200.918 kb on - strand at 200.923 kb on + strand at 200.977 kb on + strand at 200.977 kb on + strand at 200.977 kb on + strand at 200.985 kb on - strand at 200.985 kb on - strand at 200.985 kb on - strand at 200.992 kb on + strand at 200.999 kb on + strand at 201.073 kb on + strand at 201.074 kb on - strand at 201.074 kb on - strand at 201.081 kb on - strand at 201.082 kb on - strand at 201.112 kb on - strand at 201.135 kb on + strand at 201.181 kb on + strand at 201.254 kb on + strand at 201.257 kb on + strand at 201.320 kb on + strand at 201.320 kb on + strand at 201.455 kb on - strand at 201.465 kb on + strand at 201.478 kb on - strand at 201.483 kb on - strand at 201.494 kb on + strand at 201.494 kb on + strand at 201.502 kb on - strand at 201.502 kb on - strand at 201.518 kb on - strand at 201.595 kb on + strand, within PGA1_262p01830 at 201.595 kb on + strand, within PGA1_262p01830 at 201.674 kb on - strand, within PGA1_262p01830 at 201.784 kb on + strand, within PGA1_262p01830 at 201.838 kb on + strand, within PGA1_262p01830 at 201.859 kb on - strand, within PGA1_262p01830 at 201.859 kb on - strand, within PGA1_262p01830 at 201.867 kb on + strand, within PGA1_262p01830 at 201.879 kb on - strand, within PGA1_262p01830 at 201.884 kb on + strand, within PGA1_262p01830 at 201.893 kb on - strand, within PGA1_262p01830 at 201.899 kb on + strand, within PGA1_262p01830 at 201.900 kb on + strand, within PGA1_262p01830
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 199,280 - PGA1_262p01810 0.43 -1.1 199,280 - PGA1_262p01810 0.43 +0.4 199,280 - PGA1_262p01810 0.43 +1.2 199,440 - PGA1_262p01810 0.52 +0.3 199,475 + PGA1_262p01810 0.54 -0.9 199,478 - PGA1_262p01810 0.54 +0.2 199,484 - PGA1_262p01810 0.55 +0.6 199,488 - PGA1_262p01810 0.55 +0.4 199,541 + PGA1_262p01810 0.58 -1.4 199,541 + PGA1_262p01810 0.58 +0.3 199,544 - PGA1_262p01810 0.58 -0.4 199,586 - PGA1_262p01810 0.61 +1.6 199,791 + PGA1_262p01810 0.73 -1.6 199,962 + PGA1_262p01810 0.83 -0.8 200,067 + PGA1_262p01810 0.89 -2.4 200,067 + PGA1_262p01810 0.89 -0.5 200,075 - PGA1_262p01810 0.89 +0.5 200,075 - PGA1_262p01810 0.89 -0.3 200,075 - PGA1_262p01810 0.89 +0.1 200,075 - PGA1_262p01810 0.89 -0.2 200,075 - PGA1_262p01810 0.89 +0.5 200,075 - PGA1_262p01810 0.89 +1.4 200,081 + PGA1_262p01810 0.90 -0.3 200,185 + +0.2 200,308 + -1.9 200,313 + +0.2 200,321 - PGA1_262p01820 0.11 +0.9 200,418 + PGA1_262p01820 0.26 +1.2 200,433 + PGA1_262p01820 0.28 +0.8 200,737 - PGA1_262p01820 0.75 +1.9 200,761 + PGA1_262p01820 0.78 -0.4 200,761 + PGA1_262p01820 0.78 +0.3 200,773 + PGA1_262p01820 0.80 +0.7 200,786 - PGA1_262p01820 0.82 +0.3 200,872 - -0.1 200,905 + -4.1 200,905 + +0.5 200,905 + -1.6 200,913 - -0.3 200,918 - +2.5 200,923 + -2.4 200,977 + -0.7 200,977 + -1.1 200,977 + +1.0 200,985 - -1.2 200,985 - -2.4 200,985 - +1.3 200,992 + +0.9 200,999 + -2.1 201,073 + -0.5 201,074 - +1.8 201,074 - +0.1 201,081 - +1.5 201,082 - -1.0 201,112 - +0.4 201,135 + -0.7 201,181 + -1.9 201,254 + -1.5 201,257 + +0.3 201,320 + +0.0 201,320 + -1.4 201,455 - +0.1 201,465 + +0.9 201,478 - -1.0 201,483 - -0.9 201,494 + -0.1 201,494 + -0.5 201,502 - +2.7 201,502 - -2.9 201,518 - +0.3 201,595 + PGA1_262p01830 0.13 +0.9 201,595 + PGA1_262p01830 0.13 +0.8 201,674 - PGA1_262p01830 0.20 +0.5 201,784 + PGA1_262p01830 0.30 +0.6 201,838 + PGA1_262p01830 0.35 -0.4 201,859 - PGA1_262p01830 0.37 +0.2 201,859 - PGA1_262p01830 0.37 -0.6 201,867 + PGA1_262p01830 0.37 +1.0 201,879 - PGA1_262p01830 0.38 -1.1 201,884 + PGA1_262p01830 0.39 +1.4 201,893 - PGA1_262p01830 0.40 -0.3 201,899 + PGA1_262p01830 0.40 +1.1 201,900 + PGA1_262p01830 0.40 +0.4
Or see this region's nucleotide sequence