Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c27540

Experiment: m.b. A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. A22 0.04 mg/ml
2,868,116	+		PGA1_c27520	0.82	+0.1
2,868,116	+		PGA1_c27520	0.82	+0.8
2,868,116	+		PGA1_c27520	0.82	-0.9
2,868,116	+		PGA1_c27520	0.82	+0.6
2,868,116	+		PGA1_c27520	0.82	+0.4
2,868,124	-		PGA1_c27520	0.82	+0.1
2,868,124	-		PGA1_c27520	0.82	-2.6
2,868,124	-		PGA1_c27520	0.82	-0.6
2,868,124	-		PGA1_c27520	0.82	-2.4
2,868,124	-		PGA1_c27520	0.82	+2.2
2,868,134	-		PGA1_c27520	0.83	-0.9
2,868,181	+		PGA1_c27520	0.87	+1.2
2,868,181	+		PGA1_c27520	0.87	+1.3
2,868,181	+		PGA1_c27520	0.87	+1.1
2,868,189	-		PGA1_c27520	0.87	-0.8
2,868,191	+		PGA1_c27520	0.88	-1.4
2,868,191	+		PGA1_c27520	0.88	-1.0
2,868,199	-		PGA1_c27520	0.88	-0.8
2,868,199	-		PGA1_c27520	0.88	+0.1
2,868,199	-		PGA1_c27520	0.88	+0.1
2,868,199	-		PGA1_c27520	0.88	+1.2
2,868,199	-				+0.4
2,868,199	-		PGA1_c27520	0.88	-0.4
2,868,199	-		PGA1_c27520	0.88	-0.6
2,868,199	-		PGA1_c27520	0.88	-2.8
2,868,237	+				+0.3
2,868,237	+				+0.6
2,868,299	+				-0.2
2,868,328	-				-0.4
2,868,335	+				+0.5
2,868,415	+				+0.6
2,868,426	+		PGA1_c27530	0.10	-0.6
2,868,471	+		PGA1_c27530	0.16	+0.5
2,868,549	+		PGA1_c27530	0.27	-2.0
2,868,554	+		PGA1_c27530	0.27	-1.6
2,868,557	-		PGA1_c27530	0.28	+0.9
2,868,557	-		PGA1_c27530	0.28	+0.5
2,868,559	+		PGA1_c27530	0.28	+0.6
2,868,562	-		PGA1_c27530	0.28	-1.4
2,868,562	-		PGA1_c27530	0.28	-0.4
2,868,564	+		PGA1_c27530	0.29	-1.1
2,868,564	+		PGA1_c27530	0.29	+1.0
2,868,567	-		PGA1_c27530	0.29	-2.0
2,868,569	+		PGA1_c27530	0.29	+1.4
2,868,572	-		PGA1_c27530	0.30	+0.4
2,868,585	+		PGA1_c27530	0.31	-1.3
2,868,593	-		PGA1_c27530	0.33	-0.9
2,868,593	-		PGA1_c27530	0.33	+0.4
2,868,687	+		PGA1_c27530	0.45	+0.4
2,868,690	-		PGA1_c27530	0.45	-0.0
2,868,710	+		PGA1_c27530	0.48	+0.2
2,868,737	+		PGA1_c27530	0.52	-0.1
2,868,777	-		PGA1_c27530	0.57	+0.1
2,868,788	+		PGA1_c27530	0.58	-1.1
2,868,820	+		PGA1_c27530	0.63	-3.0
2,868,922	-		PGA1_c27530	0.76	-2.1
2,868,990	+		PGA1_c27530	0.85	-0.8
2,868,993	-		PGA1_c27530	0.86	-0.9
2,869,006	+		PGA1_c27530	0.87	-0.9
2,869,006	+		PGA1_c27530	0.87	-1.1
2,869,072	-				+0.1
2,869,077	-				+1.2
2,869,086	+				-0.4
2,869,086	+				-0.5
2,869,167	+				-0.8
2,869,167	+				-1.2
2,869,177	+				-2.4
2,869,184	+				-0.2
2,869,184	+				+0.7
2,869,280	+		PGA1_c27540	0.16	-0.1
2,869,280	+		PGA1_c27540	0.16	-3.0
2,869,312	+		PGA1_c27540	0.18	-1.2
2,869,350	-		PGA1_c27540	0.22	+0.9
2,869,365	-		PGA1_c27540	0.23	-0.0
2,869,370	-		PGA1_c27540	0.23	-1.0
2,869,379	+		PGA1_c27540	0.24	-0.2
2,869,387	-		PGA1_c27540	0.25	-0.6
2,869,387	-		PGA1_c27540	0.25	+0.1
2,869,387	-		PGA1_c27540	0.25	-2.0
2,869,450	+		PGA1_c27540	0.30	+0.0
2,869,458	-		PGA1_c27540	0.31	+0.4
2,869,479	-		PGA1_c27540	0.33	-1.6
2,869,481	+		PGA1_c27540	0.33	-1.1
2,869,539	+		PGA1_c27540	0.38	-0.1
2,869,568	+		PGA1_c27540	0.40	-0.3
2,869,576	-		PGA1_c27540	0.41	-0.2
2,869,576	-		PGA1_c27540	0.41	+0.1
2,869,576	-		PGA1_c27540	0.41	-1.2
2,869,576	-		PGA1_c27540	0.41	-1.3
2,869,611	-		PGA1_c27540	0.44	-0.8
2,869,643	-		PGA1_c27540	0.47	+0.5
2,869,679	+		PGA1_c27540	0.50	-0.7
2,869,687	-		PGA1_c27540	0.51	-2.0
2,869,690	-		PGA1_c27540	0.51	-0.5
2,869,690	-		PGA1_c27540	0.51	-0.3
2,869,703	+		PGA1_c27540	0.52	-0.1
2,869,716	+		PGA1_c27540	0.53	-0.5
2,869,716	+		PGA1_c27540	0.53	-0.2
2,869,734	-		PGA1_c27540	0.55	-0.4
2,869,849	+		PGA1_c27540	0.65	+0.3
2,869,857	-		PGA1_c27540	0.65	-1.9
2,869,857	-		PGA1_c27540	0.65	-0.9
2,869,857	-		PGA1_c27540	0.65	-0.8
2,869,857	-		PGA1_c27540	0.65	-0.4
2,869,857	-		PGA1_c27540	0.65	-0.9
2,869,925	+		PGA1_c27540	0.71	+0.5
2,869,925	+		PGA1_c27540	0.71	+0.8
2,869,933	-		PGA1_c27540	0.72	+0.1
2,869,981	+		PGA1_c27540	0.76	-0.2
2,870,000	+		PGA1_c27540	0.78	+0.4
2,870,037	-		PGA1_c27540	0.81	+0.4
2,870,060	+		PGA1_c27540	0.83	-0.3
2,870,072	+		PGA1_c27540	0.84	-1.5
2,870,085	-		PGA1_c27540	0.85	-1.5
2,870,086	-		PGA1_c27540	0.85	-0.4
2,870,146	+				-1.5
2,870,154	-				+0.1
2,870,154	-				-3.3
2,870,162	+				+1.1
2,870,205	+				-0.5
2,870,205	+				-0.9
2,870,243	-				-0.9
2,870,244	-				-0.2
2,870,246	+				+0.4
2,870,246	+				-1.4
2,870,251	+				-0.3
2,870,252	+				+1.0
2,870,257	+				-0.6
2,870,259	-				-1.1
2,870,262	+				+0.0
2,870,285	+				-1.4
2,870,327	+		PGA1_c27550	0.14	-1.2
2,870,348	-		PGA1_c27550	0.17	-0.5
2,870,422	+		PGA1_c27550	0.30	+0.2
2,870,451	-		PGA1_c27550	0.36	+0.9
2,870,463	+		PGA1_c27550	0.38	-1.2
2,870,529	+		PGA1_c27550	0.49	-0.9
2,870,562	-		PGA1_c27550	0.55	+1.0
2,870,569	+		PGA1_c27550	0.57	+0.5
2,870,589	+		PGA1_c27550	0.60	-1.2
2,870,589	+		PGA1_c27550	0.60	-0.6
2,870,589	+		PGA1_c27550	0.60	-1.8
2,870,597	-		PGA1_c27550	0.62	-0.7
2,870,597	-		PGA1_c27550	0.62	+0.1
2,870,597	-		PGA1_c27550	0.62	+1.7
2,870,597	-		PGA1_c27550	0.62	-1.8
2,870,694	-		PGA1_c27550	0.79	+0.2
2,870,710	+		PGA1_c27550	0.82	-0.2
2,870,710	+		PGA1_c27550	0.82	+0.4
2,870,710	+		PGA1_c27550	0.82	-1.8
2,870,710	+		PGA1_c27550	0.82	+0.6
2,870,710	+		PGA1_c27550	0.82	+1.1
2,870,710	+		PGA1_c27550	0.82	-1.1
2,870,710	+		PGA1_c27550	0.82	-2.0
2,870,716	-		PGA1_c27550	0.83	-1.6
2,870,716	-		PGA1_c27550	0.83	-1.2
2,870,716	-		PGA1_c27550	0.83	+0.8
2,870,718	-		PGA1_c27550	0.83	+0.7
2,870,718	-		PGA1_c27550	0.83	+0.1
2,870,718	-		PGA1_c27550	0.83	-0.0
2,870,718	-		PGA1_c27550	0.83	+0.4
2,870,718	-		PGA1_c27550	0.83	-1.1
2,870,718	-		PGA1_c27550	0.83	+0.8
2,870,718	-		PGA1_c27550	0.83	+0.1
2,870,718	-		PGA1_c27550	0.83	-0.2
2,870,718	-		PGA1_c27550	0.83	-1.1
2,870,718	-		PGA1_c27550	0.83	-0.6
2,870,718	-		PGA1_c27550	0.83	-0.3
2,870,718	-		PGA1_c27550	0.83	+0.9
2,870,718	-		PGA1_c27550	0.83	+0.9
2,870,720	+		PGA1_c27550	0.83	+1.3
2,870,733	-		PGA1_c27550	0.86	-0.2
2,870,733	-		PGA1_c27550	0.86	+0.9
2,870,733	-		PGA1_c27550	0.86	-0.1
2,870,788	+				-0.9
2,870,798	+				-0.1
2,870,803	+				+0.7
2,870,806	-				+0.4
2,870,806	-				-1.9
2,870,806	-				-1.0
2,870,910	+				-0.2
2,870,946	+		PGA1_c27560	0.11	+0.8
2,870,946	+		PGA1_c27560	0.11	-2.3
2,870,954	-		PGA1_c27560	0.12	-0.1
2,870,954	-		PGA1_c27560	0.12	-0.1
2,870,954	-		PGA1_c27560	0.12	-1.6
2,870,988	-		PGA1_c27560	0.14	-0.6
2,871,050	+		PGA1_c27560	0.19	+0.2
2,871,050	+		PGA1_c27560	0.19	-0.1
2,871,050	+		PGA1_c27560	0.19	-0.1
2,871,058	-		PGA1_c27560	0.20	-2.6
2,871,058	-		PGA1_c27560	0.20	+0.0
2,871,058	-		PGA1_c27560	0.20	-0.1
2,871,058	-		PGA1_c27560	0.20	-0.1
2,871,058	-		PGA1_c27560	0.20	+0.4
2,871,075	-		PGA1_c27560	0.21	-0.4
2,871,075	-		PGA1_c27560	0.21	-3.3
2,871,086	+		PGA1_c27560	0.22	-0.1
2,871,111	-		PGA1_c27560	0.24	+0.4
2,871,131	-		PGA1_c27560	0.26	+0.1
2,871,133	+		PGA1_c27560	0.26	-0.2
2,871,140	+		PGA1_c27560	0.27	+0.8
2,871,140	+		PGA1_c27560	0.27	-0.3
2,871,141	-		PGA1_c27560	0.27	-0.3
2,871,148	-		PGA1_c27560	0.27	+0.4
2,871,148	-		PGA1_c27560	0.27	-2.7
2,871,148	-		PGA1_c27560	0.27	-2.0
2,871,148	-		PGA1_c27560	0.27	-0.4
2,871,148	-		PGA1_c27560	0.27	+0.4
2,871,148	-		PGA1_c27560	0.27	-0.0
2,871,153	+		PGA1_c27560	0.28	-0.1
2,871,163	+		PGA1_c27560	0.29	-0.1
2,871,195	+		PGA1_c27560	0.31	-0.1
2,871,195	+		PGA1_c27560	0.31	+0.7
2,871,203	-		PGA1_c27560	0.32	-1.1
2,871,203	-		PGA1_c27560	0.32	-0.1
2,871,211	-		PGA1_c27560	0.33	-2.0