Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c24940

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c24920 and PGA1_c24930 are separated by 78 nucleotidesPGA1_c24930 and PGA1_c24940 are separated by 169 nucleotidesPGA1_c24940 and PGA1_c24950 are separated by 200 nucleotides PGA1_c24920: PGA1_c24920 - 60 kDa chaperonin, at 2,595,815 to 2,597,467 _c24920 PGA1_c24930: PGA1_c24930 - chaperonin GroS, at 2,597,546 to 2,597,833 _c24930 PGA1_c24940: PGA1_c24940 - Uncharacterized conserved protein, at 2,598,003 to 2,598,713 _c24940 PGA1_c24950: PGA1_c24950 - putative manganese-dependent inorganic pyrophosphatase, at 2,598,914 to 2,599,834 _c24950 Position (kb) 2598 2599Strain fitness (log2 ratio) -3 -2 -1 0 1at 2597.952 kb on + strandat 2597.960 kb on - strandat 2598.009 kb on - strandat 2598.009 kb on - strandat 2598.014 kb on - strandat 2598.014 kb on - strandat 2598.014 kb on - strandat 2598.050 kb on + strandat 2598.057 kb on + strandat 2598.067 kb on + strandat 2598.072 kb on + strandat 2598.077 kb on + strand, within PGA1_c24940at 2598.080 kb on - strand, within PGA1_c24940at 2598.087 kb on + strand, within PGA1_c24940at 2598.127 kb on - strand, within PGA1_c24940at 2598.189 kb on + strand, within PGA1_c24940at 2598.240 kb on + strand, within PGA1_c24940at 2598.248 kb on - strand, within PGA1_c24940at 2598.248 kb on - strand, within PGA1_c24940at 2598.261 kb on + strand, within PGA1_c24940at 2598.261 kb on + strand, within PGA1_c24940at 2598.332 kb on + strand, within PGA1_c24940at 2598.363 kb on - strand, within PGA1_c24940at 2598.365 kb on + strand, within PGA1_c24940at 2598.373 kb on - strand, within PGA1_c24940at 2598.384 kb on + strand, within PGA1_c24940at 2598.387 kb on + strand, within PGA1_c24940at 2598.389 kb on + strand, within PGA1_c24940at 2598.493 kb on + strand, within PGA1_c24940at 2598.508 kb on + strand, within PGA1_c24940at 2598.516 kb on - strand, within PGA1_c24940at 2598.516 kb on - strand, within PGA1_c24940at 2598.516 kb on - strand, within PGA1_c24940at 2598.530 kb on - strand, within PGA1_c24940at 2598.556 kb on - strand, within PGA1_c24940at 2598.620 kb on + strand, within PGA1_c24940at 2598.652 kb on + strandat 2598.652 kb on + strandat 2598.652 kb on + strandat 2598.660 kb on - strandat 2598.660 kb on - strandat 2598.660 kb on - strandat 2598.660 kb on - strandat 2598.660 kb on - strandat 2598.672 kb on - strandat 2598.708 kb on + strandat 2598.777 kb on + strandat 2598.784 kb on - strandat 2598.814 kb on + strandat 2598.814 kb on + strandat 2598.850 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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2,597,952 + -2.5
2,597,960 - -2.6
2,598,009 - -1.6
2,598,009 - -1.0
2,598,014 - -0.7
2,598,014 - +1.2
2,598,014 - -1.5
2,598,050 + -0.3
2,598,057 + +0.4
2,598,067 + -2.0
2,598,072 + -0.5
2,598,077 + PGA1_c24940 0.10 -2.0
2,598,080 - PGA1_c24940 0.11 +0.5
2,598,087 + PGA1_c24940 0.12 -0.6
2,598,127 - PGA1_c24940 0.17 -2.6
2,598,189 + PGA1_c24940 0.26 +0.5
2,598,240 + PGA1_c24940 0.33 -0.6
2,598,248 - PGA1_c24940 0.34 -0.9
2,598,248 - PGA1_c24940 0.34 -2.0
2,598,261 + PGA1_c24940 0.36 -0.3
2,598,261 + PGA1_c24940 0.36 +0.4
2,598,332 + PGA1_c24940 0.46 -2.8
2,598,363 - PGA1_c24940 0.51 -1.5
2,598,365 + PGA1_c24940 0.51 -1.6
2,598,373 - PGA1_c24940 0.52 -0.1
2,598,384 + PGA1_c24940 0.54 +0.5
2,598,387 + PGA1_c24940 0.54 -3.5
2,598,389 + PGA1_c24940 0.54 -0.8
2,598,493 + PGA1_c24940 0.69 -0.3
2,598,508 + PGA1_c24940 0.71 -0.8
2,598,516 - PGA1_c24940 0.72 +0.8
2,598,516 - PGA1_c24940 0.72 -1.5
2,598,516 - PGA1_c24940 0.72 -0.5
2,598,530 - PGA1_c24940 0.74 -0.5
2,598,556 - PGA1_c24940 0.78 +0.0
2,598,620 + PGA1_c24940 0.87 -0.3
2,598,652 + -0.6
2,598,652 + -0.4
2,598,652 + -0.4
2,598,660 - -0.3
2,598,660 - -0.8
2,598,660 - +0.0
2,598,660 - +0.4
2,598,660 - -1.0
2,598,672 - +0.3
2,598,708 + +0.2
2,598,777 + +0.4
2,598,784 - -2.4
2,598,814 + -0.1
2,598,814 + -2.0
2,598,850 + +0.2

Or see this region's nucleotide sequence