Strain Fitness in Marinobacter adhaerens HP15 around HP15_1746

Experiment: m.b. Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_tRNA33 and HP15_1745 are separated by 75 nucleotidesHP15_1745 and HP15_1746 are separated by 171 nucleotidesHP15_1746 and HP15_1747 are separated by 2 nucleotides HP15_tRNA33: HP15_tRNA33 - tRNA-Leu, at 1,843,336 to 1,843,422 _tRNA33 HP15_1745: HP15_1745 - methyltransferase type 11, at 1,843,498 to 1,844,151 _1745 HP15_1746: HP15_1746 - cytochrome d ubiquinol oxidase subunit I, at 1,844,323 to 1,845,765 _1746 HP15_1747: HP15_1747 - cytochrome d ubiquinol oxidase, subunit II, at 1,845,768 to 1,846,769 _1747 Position (kb) 1844 1845 1846Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1843.511 kb on - strandat 1843.513 kb on + strandat 1843.523 kb on + strandat 1843.576 kb on - strand, within HP15_1745at 1843.576 kb on - strand, within HP15_1745at 1843.634 kb on - strand, within HP15_1745at 1843.634 kb on - strand, within HP15_1745at 1843.787 kb on - strand, within HP15_1745at 1843.813 kb on - strand, within HP15_1745at 1843.815 kb on + strand, within HP15_1745at 1843.815 kb on + strand, within HP15_1745at 1843.815 kb on + strand, within HP15_1745at 1843.815 kb on + strand, within HP15_1745at 1843.815 kb on + strand, within HP15_1745at 1843.823 kb on - strand, within HP15_1745at 1843.823 kb on - strand, within HP15_1745at 1843.823 kb on - strand, within HP15_1745at 1843.823 kb on - strand, within HP15_1745at 1843.823 kb on - strand, within HP15_1745at 1843.835 kb on - strand, within HP15_1745at 1843.835 kb on - strand, within HP15_1745at 1843.919 kb on + strand, within HP15_1745at 1843.921 kb on - strand, within HP15_1745at 1843.941 kb on + strand, within HP15_1745at 1844.123 kb on - strandat 1844.162 kb on + strandat 1844.194 kb on - strandat 1844.317 kb on - strandat 1844.421 kb on - strandat 1844.483 kb on - strand, within HP15_1746at 1844.588 kb on + strand, within HP15_1746at 1844.611 kb on - strand, within HP15_1746at 1844.696 kb on + strand, within HP15_1746at 1844.748 kb on + strand, within HP15_1746at 1844.748 kb on + strand, within HP15_1746at 1844.825 kb on - strand, within HP15_1746at 1844.930 kb on + strand, within HP15_1746at 1844.987 kb on - strand, within HP15_1746at 1845.025 kb on + strand, within HP15_1746at 1845.287 kb on - strand, within HP15_1746at 1845.504 kb on + strand, within HP15_1746at 1845.540 kb on + strand, within HP15_1746at 1845.548 kb on - strand, within HP15_1746at 1845.579 kb on - strand, within HP15_1746at 1845.635 kb on + strandat 1845.706 kb on + strandat 1845.834 kb on - strandat 1845.842 kb on - strandat 1845.892 kb on - strand, within HP15_1747at 1846.212 kb on - strand, within HP15_1747at 1846.239 kb on - strand, within HP15_1747at 1846.441 kb on + strand, within HP15_1747at 1846.481 kb on - strand, within HP15_1747at 1846.557 kb on - strand, within HP15_1747at 1846.581 kb on + strand, within HP15_1747at 1846.617 kb on + strand, within HP15_1747at 1846.703 kb on + strandat 1846.758 kb on + strandat 1846.758 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.16 mM
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1,843,511 - -1.7
1,843,513 + +1.8
1,843,523 + +1.4
1,843,576 - HP15_1745 0.12 -0.2
1,843,576 - HP15_1745 0.12 -1.5
1,843,634 - HP15_1745 0.21 +0.2
1,843,634 - HP15_1745 0.21 -0.8
1,843,787 - HP15_1745 0.44 +1.1
1,843,813 - HP15_1745 0.48 -0.4
1,843,815 + HP15_1745 0.48 +3.1
1,843,815 + HP15_1745 0.48 +0.1
1,843,815 + HP15_1745 0.48 +0.5
1,843,815 + HP15_1745 0.48 +1.2
1,843,815 + HP15_1745 0.48 +0.3
1,843,823 - HP15_1745 0.50 +0.3
1,843,823 - HP15_1745 0.50 -1.5
1,843,823 - HP15_1745 0.50 -0.9
1,843,823 - HP15_1745 0.50 -0.9
1,843,823 - HP15_1745 0.50 +0.5
1,843,835 - HP15_1745 0.52 -0.9
1,843,835 - HP15_1745 0.52 -0.1
1,843,919 + HP15_1745 0.64 +1.5
1,843,921 - HP15_1745 0.65 -0.6
1,843,941 + HP15_1745 0.68 +0.7
1,844,123 - +3.9
1,844,162 + -1.3
1,844,194 - -3.1
1,844,317 - -2.4
1,844,421 - -1.5
1,844,483 - HP15_1746 0.11 -3.0
1,844,588 + HP15_1746 0.18 -2.9
1,844,611 - HP15_1746 0.20 +0.5
1,844,696 + HP15_1746 0.26 -3.5
1,844,748 + HP15_1746 0.29 -5.2
1,844,748 + HP15_1746 0.29 -4.0
1,844,825 - HP15_1746 0.35 -3.2
1,844,930 + HP15_1746 0.42 -2.3
1,844,987 - HP15_1746 0.46 -2.9
1,845,025 + HP15_1746 0.49 -1.8
1,845,287 - HP15_1746 0.67 -1.6
1,845,504 + HP15_1746 0.82 -3.8
1,845,540 + HP15_1746 0.84 -2.6
1,845,548 - HP15_1746 0.85 -2.2
1,845,579 - HP15_1746 0.87 -2.6
1,845,635 + -3.4
1,845,706 + -3.4
1,845,834 - -4.2
1,845,842 - -3.6
1,845,892 - HP15_1747 0.12 -3.2
1,846,212 - HP15_1747 0.44 -3.6
1,846,239 - HP15_1747 0.47 -1.1
1,846,441 + HP15_1747 0.67 -3.3
1,846,481 - HP15_1747 0.71 -2.0
1,846,557 - HP15_1747 0.79 -4.2
1,846,581 + HP15_1747 0.81 -2.3
1,846,617 + HP15_1747 0.85 -4.4
1,846,703 + -3.3
1,846,758 + -4.4
1,846,758 + -3.7

Or see this region's nucleotide sequence