Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00140 and PGA1_c00150 are separated by 113 nucleotides PGA1_c00150 and PGA1_c00160 are separated by 146 nucleotides PGA1_c00160 and PGA1_c00170 are separated by 249 nucleotides PGA1_c00170 and PGA1_c00180 are separated by 46 nucleotides PGA1_c00180 and PGA1_c00190 are separated by 19 nucleotides
PGA1_c00140: PGA1_c00140 - 23S ribosomal RNA, at 15,383 to 18,208
_c00140
PGA1_c00150: PGA1_c00150 - 5S ribosomal RNA, at 18,322 to 18,435
_c00150
PGA1_c00160: PGA1_c00160 - tRNA-Met, at 18,582 to 18,658
_c00160
PGA1_c00170: PGA1_c00170 - hypothetical protein, at 18,908 to 19,213
_c00170
PGA1_c00180: PGA1_c00180 - lysE type translocator-like protein, at 19,260 to 19,904
_c00180
PGA1_c00190: PGA1_c00190 - lysE type translocator-like protein, at 19,924 to 20,565
_c00190
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 18.747 kb on + strand at 18.781 kb on + strand at 18.784 kb on + strand at 18.789 kb on - strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.842 kb on - strand at 18.842 kb on - strand at 18.852 kb on - strand at 18.855 kb on - strand at 18.866 kb on - strand at 18.894 kb on + strand at 18.894 kb on + strand at 18.894 kb on + strand at 18.902 kb on - strand at 18.902 kb on - strand at 18.902 kb on - strand at 18.902 kb on - strand at 18.924 kb on + strand at 18.929 kb on + strand at 18.932 kb on - strand at 18.932 kb on - strand at 18.937 kb on - strand at 18.955 kb on - strand, within PGA1_c00170 at 18.955 kb on - strand, within PGA1_c00170 at 18.962 kb on + strand, within PGA1_c00170 at 18.970 kb on - strand, within PGA1_c00170 at 18.997 kb on + strand, within PGA1_c00170 at 18.997 kb on + strand, within PGA1_c00170 at 18.997 kb on + strand, within PGA1_c00170 at 18.997 kb on + strand, within PGA1_c00170 at 19.008 kb on + strand, within PGA1_c00170 at 19.051 kb on - strand, within PGA1_c00170 at 19.099 kb on + strand, within PGA1_c00170 at 19.099 kb on + strand, within PGA1_c00170 at 19.163 kb on - strand, within PGA1_c00170 at 19.185 kb on + strand at 19.206 kb on + strand at 19.218 kb on + strand at 19.286 kb on - strand at 19.331 kb on + strand, within PGA1_c00180 at 19.346 kb on + strand, within PGA1_c00180 at 19.346 kb on + strand, within PGA1_c00180 at 19.346 kb on + strand, within PGA1_c00180 at 19.349 kb on + strand, within PGA1_c00180 at 19.349 kb on - strand, within PGA1_c00180 at 19.354 kb on - strand, within PGA1_c00180 at 19.354 kb on - strand, within PGA1_c00180 at 19.359 kb on + strand, within PGA1_c00180 at 19.359 kb on + strand, within PGA1_c00180 at 19.367 kb on - strand, within PGA1_c00180 at 19.367 kb on - strand, within PGA1_c00180 at 19.367 kb on - strand, within PGA1_c00180 at 19.374 kb on - strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.393 kb on + strand, within PGA1_c00180 at 19.397 kb on - strand, within PGA1_c00180 at 19.412 kb on + strand, within PGA1_c00180 at 19.423 kb on + strand, within PGA1_c00180 at 19.426 kb on + strand, within PGA1_c00180 at 19.434 kb on - strand, within PGA1_c00180 at 19.436 kb on - strand, within PGA1_c00180 at 19.441 kb on - strand, within PGA1_c00180 at 19.454 kb on - strand, within PGA1_c00180 at 19.454 kb on - strand, within PGA1_c00180 at 19.454 kb on - strand, within PGA1_c00180 at 19.455 kb on - strand, within PGA1_c00180 at 19.459 kb on + strand, within PGA1_c00180 at 19.485 kb on + strand, within PGA1_c00180 at 19.517 kb on + strand, within PGA1_c00180 at 19.517 kb on + strand, within PGA1_c00180 at 19.523 kb on + strand, within PGA1_c00180 at 19.523 kb on + strand, within PGA1_c00180 at 19.525 kb on - strand, within PGA1_c00180 at 19.525 kb on - strand, within PGA1_c00180 at 19.525 kb on - strand, within PGA1_c00180 at 19.536 kb on - strand, within PGA1_c00180 at 19.536 kb on - strand, within PGA1_c00180 at 19.536 kb on - strand, within PGA1_c00180 at 19.552 kb on + strand, within PGA1_c00180 at 19.619 kb on + strand, within PGA1_c00180 at 19.621 kb on + strand, within PGA1_c00180 at 19.627 kb on + strand, within PGA1_c00180 at 19.627 kb on - strand, within PGA1_c00180 at 19.699 kb on + strand, within PGA1_c00180 at 19.704 kb on + strand, within PGA1_c00180 at 19.704 kb on + strand, within PGA1_c00180 at 19.704 kb on + strand, within PGA1_c00180 at 19.707 kb on - strand, within PGA1_c00180 at 19.712 kb on - strand, within PGA1_c00180 at 19.741 kb on + strand, within PGA1_c00180 at 19.747 kb on + strand, within PGA1_c00180 at 19.779 kb on + strand, within PGA1_c00180 at 19.779 kb on + strand, within PGA1_c00180 at 19.787 kb on - strand, within PGA1_c00180 at 19.789 kb on + strand, within PGA1_c00180 at 19.825 kb on - strand, within PGA1_c00180 at 19.825 kb on - strand, within PGA1_c00180 at 19.834 kb on + strand, within PGA1_c00180 at 19.834 kb on + strand, within PGA1_c00180 at 19.842 kb on - strand at 19.842 kb on - strand at 19.855 kb on - strand at 19.855 kb on - strand at 19.855 kb on - strand at 19.855 kb on - strand at 19.855 kb on - strand at 19.860 kb on + strand at 19.860 kb on - strand at 19.917 kb on + strand at 19.917 kb on + strand at 19.917 kb on + strand at 19.917 kb on + strand at 19.917 kb on + strand at 19.920 kb on + strand at 19.923 kb on - strand at 19.925 kb on - strand at 19.925 kb on - strand at 19.925 kb on - strand at 19.925 kb on - strand at 19.925 kb on - strand at 19.925 kb on - strand at 19.925 kb on - strand at 19.925 kb on - strand at 19.925 kb on - strand at 19.925 kb on - strand at 19.925 kb on - strand at 19.926 kb on + strand at 19.927 kb on + strand at 19.928 kb on - strand at 19.928 kb on - strand at 19.928 kb on - strand at 19.935 kb on - strand at 19.936 kb on + strand at 19.936 kb on + strand at 19.952 kb on - strand at 19.984 kb on - strand at 19.986 kb on + strand at 19.986 kb on + strand at 19.986 kb on + strand at 19.986 kb on + strand at 19.994 kb on - strand, within PGA1_c00190 at 19.994 kb on - strand, within PGA1_c00190 at 19.994 kb on - strand, within PGA1_c00190 at 19.994 kb on - strand, within PGA1_c00190 at 20.004 kb on - strand, within PGA1_c00190 at 20.019 kb on - strand, within PGA1_c00190 at 20.020 kb on + strand, within PGA1_c00190 at 20.038 kb on + strand, within PGA1_c00190 at 20.045 kb on + strand, within PGA1_c00190 at 20.046 kb on - strand, within PGA1_c00190 at 20.053 kb on - strand, within PGA1_c00190 at 20.053 kb on - strand, within PGA1_c00190 at 20.066 kb on + strand, within PGA1_c00190 at 20.110 kb on + strand, within PGA1_c00190 at 20.113 kb on - strand, within PGA1_c00190 at 20.113 kb on - strand, within PGA1_c00190 at 20.122 kb on + strand, within PGA1_c00190 at 20.122 kb on + strand, within PGA1_c00190 at 20.130 kb on + strand, within PGA1_c00190 at 20.130 kb on + strand, within PGA1_c00190 at 20.130 kb on + strand, within PGA1_c00190 at 20.130 kb on - strand, within PGA1_c00190 at 20.130 kb on - strand, within PGA1_c00190 at 20.138 kb on - strand, within PGA1_c00190 at 20.138 kb on - strand, within PGA1_c00190 at 20.150 kb on + strand, within PGA1_c00190 at 20.150 kb on + strand, within PGA1_c00190 at 20.163 kb on - strand, within PGA1_c00190
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 18,747 + +1.1 18,781 + +0.4 18,784 + +0.2 18,789 - -0.5 18,829 + -0.5 18,829 + -1.3 18,829 + -0.6 18,829 + +0.8 18,829 + -0.3 18,829 + +0.7 18,829 + +1.1 18,829 + -0.2 18,829 + -0.2 18,829 + +1.2 18,829 + -0.7 18,829 + +1.1 18,829 + -0.2 18,829 + -0.9 18,829 + +0.2 18,829 + +0.1 18,829 + -0.5 18,829 + -0.5 18,829 + +1.1 18,829 + -0.8 18,829 + +1.1 18,829 + +0.0 18,837 - +0.9 18,837 - -2.7 18,837 - -0.0 18,837 - -0.6 18,837 - +0.1 18,837 - +0.5 18,837 - +0.3 18,837 - -0.8 18,837 - +0.1 18,837 - +0.7 18,837 - +0.1 18,837 - -0.2 18,837 - +0.3 18,837 - -0.9 18,837 - +0.9 18,837 - -1.3 18,837 - +1.1 18,837 - -0.9 18,837 - +0.7 18,837 - -1.8 18,837 - +0.5 18,837 - -0.8 18,837 - +1.2 18,837 - -0.5 18,842 - -2.5 18,842 - +0.4 18,852 - -1.9 18,855 - -0.4 18,866 - -0.0 18,894 + -0.1 18,894 + -0.9 18,894 + -1.6 18,902 - -0.1 18,902 - +1.0 18,902 - -0.2 18,902 - -0.8 18,924 + -1.0 18,929 + +1.5 18,932 - +2.3 18,932 - -0.5 18,937 - +0.3 18,955 - PGA1_c00170 0.15 -0.7 18,955 - PGA1_c00170 0.15 -0.6 18,962 + PGA1_c00170 0.18 -0.3 18,970 - PGA1_c00170 0.20 -1.2 18,997 + PGA1_c00170 0.29 +1.5 18,997 + PGA1_c00170 0.29 -0.0 18,997 + PGA1_c00170 0.29 -1.0 18,997 + PGA1_c00170 0.29 +0.0 19,008 + PGA1_c00170 0.33 -0.7 19,051 - PGA1_c00170 0.47 +0.0 19,099 + PGA1_c00170 0.62 -0.7 19,099 + PGA1_c00170 0.62 -1.9 19,163 - PGA1_c00170 0.83 -0.3 19,185 + -1.0 19,206 + +1.0 19,218 + +0.1 19,286 - -1.7 19,331 + PGA1_c00180 0.11 -0.3 19,346 + PGA1_c00180 0.13 +0.5 19,346 + PGA1_c00180 0.13 -2.1 19,346 + PGA1_c00180 0.13 +1.3 19,349 + PGA1_c00180 0.14 +0.5 19,349 - PGA1_c00180 0.14 -1.0 19,354 - PGA1_c00180 0.15 +0.3 19,354 - PGA1_c00180 0.15 -1.2 19,359 + PGA1_c00180 0.15 +0.7 19,359 + PGA1_c00180 0.15 -0.6 19,367 - PGA1_c00180 0.17 -0.7 19,367 - PGA1_c00180 0.17 +1.2 19,367 - PGA1_c00180 0.17 -0.1 19,374 - PGA1_c00180 0.18 +1.1 19,376 + PGA1_c00180 0.18 -0.1 19,376 + PGA1_c00180 0.18 -0.9 19,376 + PGA1_c00180 0.18 -0.3 19,376 + PGA1_c00180 0.18 +0.0 19,376 + PGA1_c00180 0.18 +1.3 19,376 + PGA1_c00180 0.18 +0.4 19,376 + PGA1_c00180 0.18 +0.7 19,376 + PGA1_c00180 0.18 -0.5 19,376 + PGA1_c00180 0.18 -0.3 19,376 + PGA1_c00180 0.18 -1.3 19,376 + PGA1_c00180 0.18 +0.3 19,376 + PGA1_c00180 0.18 +0.7 19,376 + PGA1_c00180 0.18 -0.9 19,376 + PGA1_c00180 0.18 +0.2 19,376 + PGA1_c00180 0.18 -1.6 19,376 + PGA1_c00180 0.18 -0.3 19,376 + PGA1_c00180 0.18 +0.1 19,376 + PGA1_c00180 0.18 -0.1 19,376 + PGA1_c00180 0.18 -1.2 19,376 + PGA1_c00180 0.18 +0.0 19,376 + PGA1_c00180 0.18 -3.2 19,376 + PGA1_c00180 0.18 -1.9 19,376 + PGA1_c00180 0.18 -0.1 19,376 + PGA1_c00180 0.18 -1.2 19,376 + PGA1_c00180 0.18 +0.8 19,376 + PGA1_c00180 0.18 -0.1 19,376 + PGA1_c00180 0.18 +0.6 19,376 + PGA1_c00180 0.18 +0.8 19,376 + PGA1_c00180 0.18 +0.1 19,376 + PGA1_c00180 0.18 +0.3 19,384 - PGA1_c00180 0.19 -0.3 19,384 - PGA1_c00180 0.19 +1.1 19,384 - PGA1_c00180 0.19 -0.8 19,384 - PGA1_c00180 0.19 -0.0 19,384 - PGA1_c00180 0.19 +0.7 19,384 - PGA1_c00180 0.19 -0.6 19,384 - PGA1_c00180 0.19 +0.7 19,384 - PGA1_c00180 0.19 +0.4 19,384 - PGA1_c00180 0.19 -0.3 19,384 - PGA1_c00180 0.19 -2.3 19,384 - PGA1_c00180 0.19 -0.2 19,384 - PGA1_c00180 0.19 -0.2 19,384 - PGA1_c00180 0.19 -1.5 19,384 - PGA1_c00180 0.19 -0.8 19,384 - PGA1_c00180 0.19 +0.1 19,384 - PGA1_c00180 0.19 -0.5 19,384 - PGA1_c00180 0.19 -0.3 19,384 - PGA1_c00180 0.19 +0.1 19,384 - PGA1_c00180 0.19 -1.3 19,384 - PGA1_c00180 0.19 -2.1 19,393 + PGA1_c00180 0.21 -0.8 19,397 - PGA1_c00180 0.21 -0.1 19,412 + PGA1_c00180 0.24 -0.6 19,423 + PGA1_c00180 0.25 -0.1 19,426 + PGA1_c00180 0.26 -0.1 19,434 - PGA1_c00180 0.27 +0.1 19,436 - PGA1_c00180 0.27 +2.3 19,441 - PGA1_c00180 0.28 -1.3 19,454 - PGA1_c00180 0.30 -0.5 19,454 - PGA1_c00180 0.30 +0.7 19,454 - PGA1_c00180 0.30 +0.3 19,455 - PGA1_c00180 0.30 -0.9 19,459 + PGA1_c00180 0.31 -0.6 19,485 + PGA1_c00180 0.35 +0.1 19,517 + PGA1_c00180 0.40 -0.4 19,517 + PGA1_c00180 0.40 +0.0 19,523 + PGA1_c00180 0.41 +0.0 19,523 + PGA1_c00180 0.41 +1.0 19,525 - PGA1_c00180 0.41 +2.3 19,525 - PGA1_c00180 0.41 -0.5 19,525 - PGA1_c00180 0.41 -0.0 19,536 - PGA1_c00180 0.43 -0.3 19,536 - PGA1_c00180 0.43 -2.1 19,536 - PGA1_c00180 0.43 -0.3 19,552 + PGA1_c00180 0.45 -0.9 19,619 + PGA1_c00180 0.56 -0.8 19,621 + PGA1_c00180 0.56 +0.1 19,627 + PGA1_c00180 0.57 -0.2 19,627 - PGA1_c00180 0.57 -2.0 19,699 + PGA1_c00180 0.68 +0.2 19,704 + PGA1_c00180 0.69 -0.1 19,704 + PGA1_c00180 0.69 -0.6 19,704 + PGA1_c00180 0.69 -0.0 19,707 - PGA1_c00180 0.69 -0.1 19,712 - PGA1_c00180 0.70 -0.5 19,741 + PGA1_c00180 0.75 +0.8 19,747 + PGA1_c00180 0.76 -2.2 19,779 + PGA1_c00180 0.80 -2.3 19,779 + PGA1_c00180 0.80 +0.5 19,787 - PGA1_c00180 0.82 -0.3 19,789 + PGA1_c00180 0.82 -0.5 19,825 - PGA1_c00180 0.88 +0.6 19,825 - PGA1_c00180 0.88 +0.8 19,834 + PGA1_c00180 0.89 -0.5 19,834 + PGA1_c00180 0.89 -0.2 19,842 - +0.4 19,842 - +0.1 19,855 - +0.5 19,855 - -0.6 19,855 - -0.3 19,855 - -0.1 19,855 - -2.0 19,860 + -0.1 19,860 - +1.5 19,917 + -0.9 19,917 + -0.1 19,917 + -0.4 19,917 + +0.0 19,917 + -0.5 19,920 + +0.2 19,923 - -2.1 19,925 - +0.7 19,925 - -0.2 19,925 - -3.0 19,925 - -0.3 19,925 - +0.5 19,925 - +1.4 19,925 - +0.3 19,925 - -1.0 19,925 - -0.0 19,925 - +1.5 19,925 - +0.9 19,926 + -0.0 19,927 + -0.1 19,928 - -0.5 19,928 - -0.9 19,928 - -1.1 19,935 - -0.3 19,936 + +0.4 19,936 + +0.8 19,952 - -0.2 19,984 - +2.7 19,986 + -1.3 19,986 + +0.7 19,986 + -0.4 19,986 + -1.3 19,994 - PGA1_c00190 0.11 -0.2 19,994 - PGA1_c00190 0.11 -0.3 19,994 - PGA1_c00190 0.11 +0.2 19,994 - PGA1_c00190 0.11 +1.3 20,004 - PGA1_c00190 0.12 -0.3 20,019 - PGA1_c00190 0.15 +0.1 20,020 + PGA1_c00190 0.15 -0.8 20,038 + PGA1_c00190 0.18 +0.0 20,045 + PGA1_c00190 0.19 -0.4 20,046 - PGA1_c00190 0.19 -2.0 20,053 - PGA1_c00190 0.20 +0.1 20,053 - PGA1_c00190 0.20 +0.0 20,066 + PGA1_c00190 0.22 +2.4 20,110 + PGA1_c00190 0.29 +1.1 20,113 - PGA1_c00190 0.29 +0.4 20,113 - PGA1_c00190 0.29 -0.6 20,122 + PGA1_c00190 0.31 -0.6 20,122 + PGA1_c00190 0.31 +0.0 20,130 + PGA1_c00190 0.32 -0.9 20,130 + PGA1_c00190 0.32 +0.4 20,130 + PGA1_c00190 0.32 +1.0 20,130 - PGA1_c00190 0.32 +0.5 20,130 - PGA1_c00190 0.32 -0.4 20,138 - PGA1_c00190 0.33 -0.3 20,138 - PGA1_c00190 0.33 +1.3 20,150 + PGA1_c00190 0.35 -0.4 20,150 + PGA1_c00190 0.35 +0.8 20,163 - PGA1_c00190 0.37 -1.9
Or see this region's nucleotide sequence