Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c01180

Experiment: m.b. A22 0.04 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c01160 and PGA1_c01170 are separated by 66 nucleotidesPGA1_c01170 and PGA1_c01180 overlap by 8 nucleotidesPGA1_c01180 and PGA1_c01190 are separated by 9 nucleotidesPGA1_c01190 and PGA1_c01200 are separated by 0 nucleotidesPGA1_c01200 and PGA1_c01210 are separated by 34 nucleotides PGA1_c01160: PGA1_c01160 - sensor protein ChvG, at 109,316 to 111,028 _c01160 PGA1_c01170: PGA1_c01170 - HPr kinase/phosphorylase-like protein, at 111,095 to 111,469 _c01170 PGA1_c01180: PGA1_c01180 - Predicted P-loop-containing kinase, at 111,462 to 112,352 _c01180 PGA1_c01190: PGA1_c01190 - putative PTS system fructose subfamily IIA component, at 112,362 to 112,769 _c01190 PGA1_c01200: PGA1_c01200 - putative phosphocarrier, HPr family, at 112,770 to 113,039 _c01200 PGA1_c01210: PGA1_c01210 - Putative hemolysin, at 113,074 to 113,964 _c01210 Position (kb) 111 112 113Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 110.514 kb on + strand, within PGA1_c01160at 110.522 kb on - strand, within PGA1_c01160at 110.522 kb on - strand, within PGA1_c01160at 110.544 kb on - strand, within PGA1_c01160at 110.546 kb on + strand, within PGA1_c01160at 110.564 kb on - strand, within PGA1_c01160at 110.564 kb on - strand, within PGA1_c01160at 110.629 kb on - strand, within PGA1_c01160at 110.700 kb on - strand, within PGA1_c01160at 110.701 kb on - strand, within PGA1_c01160at 110.701 kb on - strand, within PGA1_c01160at 110.734 kb on + strand, within PGA1_c01160at 110.814 kb on + strand, within PGA1_c01160at 110.822 kb on - strand, within PGA1_c01160at 110.837 kb on + strand, within PGA1_c01160at 110.845 kb on - strand, within PGA1_c01160at 110.847 kb on - strand, within PGA1_c01160at 110.881 kb on + strandat 110.886 kb on + strandat 110.894 kb on - strandat 110.899 kb on - strandat 110.935 kb on - strandat 110.936 kb on + strandat 110.936 kb on + strandat 110.936 kb on + strandat 110.936 kb on + strandat 110.936 kb on + strandat 110.941 kb on + strandat 110.941 kb on + strandat 110.944 kb on - strandat 110.944 kb on - strandat 110.944 kb on - strandat 110.944 kb on - strandat 110.949 kb on - strandat 110.949 kb on - strandat 110.949 kb on - strandat 110.980 kb on - strandat 111.041 kb on + strandat 111.048 kb on + strandat 111.048 kb on + strandat 111.049 kb on - strandat 111.051 kb on - strandat 111.056 kb on - strandat 111.094 kb on + strandat 111.094 kb on + strandat 111.169 kb on - strand, within PGA1_c01170at 111.174 kb on - strand, within PGA1_c01170at 111.176 kb on + strand, within PGA1_c01170at 111.179 kb on - strand, within PGA1_c01170at 111.258 kb on + strand, within PGA1_c01170at 111.258 kb on + strand, within PGA1_c01170at 111.258 kb on + strand, within PGA1_c01170at 111.258 kb on + strand, within PGA1_c01170at 111.258 kb on + strand, within PGA1_c01170at 111.266 kb on - strand, within PGA1_c01170at 111.266 kb on - strand, within PGA1_c01170at 111.266 kb on - strand, within PGA1_c01170at 111.266 kb on - strand, within PGA1_c01170at 111.266 kb on - strand, within PGA1_c01170at 111.266 kb on - strand, within PGA1_c01170at 111.266 kb on - strand, within PGA1_c01170at 111.276 kb on - strand, within PGA1_c01170at 111.325 kb on + strand, within PGA1_c01170at 111.325 kb on + strand, within PGA1_c01170at 111.333 kb on - strand, within PGA1_c01170at 111.423 kb on + strand, within PGA1_c01170at 111.423 kb on + strand, within PGA1_c01170at 111.423 kb on + strand, within PGA1_c01170at 111.431 kb on - strand, within PGA1_c01170at 111.431 kb on - strand, within PGA1_c01170at 111.459 kb on - strandat 111.464 kb on - strandat 111.528 kb on + strandat 111.542 kb on - strandat 111.544 kb on - strandat 111.582 kb on + strand, within PGA1_c01180at 111.621 kb on + strand, within PGA1_c01180at 111.703 kb on - strand, within PGA1_c01180at 111.802 kb on + strand, within PGA1_c01180at 111.810 kb on - strand, within PGA1_c01180at 111.861 kb on - strand, within PGA1_c01180at 111.954 kb on + strand, within PGA1_c01180at 111.968 kb on + strand, within PGA1_c01180at 111.968 kb on + strand, within PGA1_c01180at 111.968 kb on + strand, within PGA1_c01180at 111.968 kb on + strand, within PGA1_c01180at 111.968 kb on + strand, within PGA1_c01180at 111.968 kb on + strand, within PGA1_c01180at 111.968 kb on + strand, within PGA1_c01180at 111.968 kb on + strand, within PGA1_c01180at 111.968 kb on + strand, within PGA1_c01180at 111.968 kb on + strand, within PGA1_c01180at 111.975 kb on + strand, within PGA1_c01180at 111.976 kb on - strand, within PGA1_c01180at 111.976 kb on - strand, within PGA1_c01180at 111.976 kb on - strand, within PGA1_c01180at 111.976 kb on - strand, within PGA1_c01180at 111.976 kb on - strand, within PGA1_c01180at 112.058 kb on + strand, within PGA1_c01180at 112.060 kb on - strand, within PGA1_c01180at 112.084 kb on + strand, within PGA1_c01180at 112.084 kb on + strand, within PGA1_c01180at 112.084 kb on + strand, within PGA1_c01180at 112.084 kb on + strand, within PGA1_c01180at 112.084 kb on + strand, within PGA1_c01180at 112.084 kb on + strand, within PGA1_c01180at 112.084 kb on + strand, within PGA1_c01180at 112.084 kb on + strand, within PGA1_c01180at 112.084 kb on + strand, within PGA1_c01180at 112.087 kb on - strand, within PGA1_c01180at 112.092 kb on - strand, within PGA1_c01180at 112.092 kb on - strand, within PGA1_c01180at 112.092 kb on - strand, within PGA1_c01180at 112.104 kb on + strand, within PGA1_c01180at 112.112 kb on + strand, within PGA1_c01180at 112.122 kb on + strand, within PGA1_c01180at 112.242 kb on + strand, within PGA1_c01180at 112.250 kb on - strand, within PGA1_c01180at 112.255 kb on - strand, within PGA1_c01180at 112.263 kb on - strand, within PGA1_c01180at 112.300 kb on + strandat 112.308 kb on - strandat 112.312 kb on + strandat 112.781 kb on - strandat 112.835 kb on + strand, within PGA1_c01200at 112.835 kb on + strand, within PGA1_c01200at 112.872 kb on - strand, within PGA1_c01200at 112.933 kb on + strand, within PGA1_c01200at 112.988 kb on + strand, within PGA1_c01200at 113.035 kb on + strandat 113.063 kb on + strandat 113.063 kb on + strandat 113.063 kb on + strandat 113.071 kb on - strandat 113.071 kb on - strandat 113.105 kb on - strandat 113.117 kb on + strandat 113.117 kb on + strandat 113.217 kb on + strand, within PGA1_c01210at 113.265 kb on + strand, within PGA1_c01210at 113.349 kb on + strand, within PGA1_c01210

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
remove
110,514 + PGA1_c01160 0.70 +0.5
110,522 - PGA1_c01160 0.70 +1.0
110,522 - PGA1_c01160 0.70 +1.7
110,544 - PGA1_c01160 0.72 +0.4
110,546 + PGA1_c01160 0.72 +1.1
110,564 - PGA1_c01160 0.73 -1.6
110,564 - PGA1_c01160 0.73 +0.1
110,629 - PGA1_c01160 0.77 +1.0
110,700 - PGA1_c01160 0.81 +0.6
110,701 - PGA1_c01160 0.81 +1.8
110,701 - PGA1_c01160 0.81 +0.8
110,734 + PGA1_c01160 0.83 +1.5
110,814 + PGA1_c01160 0.87 +0.0
110,822 - PGA1_c01160 0.88 +1.3
110,837 + PGA1_c01160 0.89 +0.0
110,845 - PGA1_c01160 0.89 +0.1
110,847 - PGA1_c01160 0.89 -1.3
110,881 + -0.3
110,886 + +0.1
110,894 - +1.2
110,899 - +0.9
110,935 - +1.4
110,936 + -1.1
110,936 + +0.5
110,936 + +0.2
110,936 + -0.6
110,936 + +0.4
110,941 + -0.5
110,941 + +1.4
110,944 - +1.2
110,944 - +0.6
110,944 - -0.5
110,944 - -1.1
110,949 - +0.4
110,949 - -0.3
110,949 - +1.2
110,980 - +0.6
111,041 + -0.5
111,048 + -0.5
111,048 + -0.4
111,049 - -0.2
111,051 - -1.2
111,056 - +0.2
111,094 + -2.3
111,094 + -0.4
111,169 - PGA1_c01170 0.20 -0.1
111,174 - PGA1_c01170 0.21 -1.1
111,176 + PGA1_c01170 0.22 -0.2
111,179 - PGA1_c01170 0.22 +0.4
111,258 + PGA1_c01170 0.43 +0.7
111,258 + PGA1_c01170 0.43 -0.3
111,258 + PGA1_c01170 0.43 +0.6
111,258 + PGA1_c01170 0.43 -0.3
111,258 + PGA1_c01170 0.43 -0.2
111,266 - PGA1_c01170 0.46 -0.7
111,266 - PGA1_c01170 0.46 -0.1
111,266 - PGA1_c01170 0.46 +0.8
111,266 - PGA1_c01170 0.46 -0.8
111,266 - PGA1_c01170 0.46 -0.3
111,266 - PGA1_c01170 0.46 +1.2
111,266 - PGA1_c01170 0.46 -1.0
111,276 - PGA1_c01170 0.48 -1.3
111,325 + PGA1_c01170 0.61 -1.2
111,325 + PGA1_c01170 0.61 +0.0
111,333 - PGA1_c01170 0.63 -0.7
111,423 + PGA1_c01170 0.87 -0.2
111,423 + PGA1_c01170 0.87 -2.2
111,423 + PGA1_c01170 0.87 +0.0
111,431 - PGA1_c01170 0.90 -3.5
111,431 - PGA1_c01170 0.90 +1.0
111,459 - -1.3
111,464 - -1.1
111,528 + -1.0
111,542 - +1.3
111,544 - -0.7
111,582 + PGA1_c01180 0.13 -0.9
111,621 + PGA1_c01180 0.18 -0.6
111,703 - PGA1_c01180 0.27 -0.6
111,802 + PGA1_c01180 0.38 +0.1
111,810 - PGA1_c01180 0.39 +0.1
111,861 - PGA1_c01180 0.45 +0.5
111,954 + PGA1_c01180 0.55 -1.2
111,968 + PGA1_c01180 0.57 -1.9
111,968 + PGA1_c01180 0.57 -1.6
111,968 + PGA1_c01180 0.57 -0.1
111,968 + PGA1_c01180 0.57 -0.2
111,968 + PGA1_c01180 0.57 +0.2
111,968 + PGA1_c01180 0.57 -0.8
111,968 + PGA1_c01180 0.57 -0.1
111,968 + PGA1_c01180 0.57 -0.4
111,968 + PGA1_c01180 0.57 +0.6
111,968 + PGA1_c01180 0.57 -0.5
111,975 + PGA1_c01180 0.58 -0.6
111,976 - PGA1_c01180 0.58 +0.4
111,976 - PGA1_c01180 0.58 -0.4
111,976 - PGA1_c01180 0.58 +0.4
111,976 - PGA1_c01180 0.58 +1.0
111,976 - PGA1_c01180 0.58 -1.2
112,058 + PGA1_c01180 0.67 -0.6
112,060 - PGA1_c01180 0.67 +0.0
112,084 + PGA1_c01180 0.70 +0.1
112,084 + PGA1_c01180 0.70 +0.3
112,084 + PGA1_c01180 0.70 -1.2
112,084 + PGA1_c01180 0.70 +0.3
112,084 + PGA1_c01180 0.70 +0.7
112,084 + PGA1_c01180 0.70 -0.7
112,084 + PGA1_c01180 0.70 -0.8
112,084 + PGA1_c01180 0.70 -0.6
112,084 + PGA1_c01180 0.70 +0.5
112,087 - PGA1_c01180 0.70 +0.1
112,092 - PGA1_c01180 0.71 -1.4
112,092 - PGA1_c01180 0.71 +0.1
112,092 - PGA1_c01180 0.71 +0.9
112,104 + PGA1_c01180 0.72 -1.9
112,112 + PGA1_c01180 0.73 +0.1
112,122 + PGA1_c01180 0.74 -0.7
112,242 + PGA1_c01180 0.88 -0.5
112,250 - PGA1_c01180 0.88 -0.4
112,255 - PGA1_c01180 0.89 -1.3
112,263 - PGA1_c01180 0.90 -0.6
112,300 + -3.2
112,308 - -0.7
112,312 + -0.9
112,781 - +0.5
112,835 + PGA1_c01200 0.24 +0.4
112,835 + PGA1_c01200 0.24 -0.7
112,872 - PGA1_c01200 0.38 -0.8
112,933 + PGA1_c01200 0.60 -1.8
112,988 + PGA1_c01200 0.81 +0.3
113,035 + -0.4
113,063 + -1.1
113,063 + -3.4
113,063 + +0.5
113,071 - -1.6
113,071 - -0.6
113,105 - -0.5
113,117 + -0.3
113,117 + -1.2
113,217 + PGA1_c01210 0.16 -3.5
113,265 + PGA1_c01210 0.21 +0.7
113,349 + PGA1_c01210 0.31 +0.4

Or see this region's nucleotide sequence