Strain Fitness in Shewanella amazonensis SB2B around Sama_2839

Experiment: Tween 20

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_2838 and Sama_2839 overlap by 1 nucleotidesSama_2839 and pntA are separated by 346 nucleotides Sama_2838: Sama_2838 - sulfite reductase subunit beta (RefSeq), at 3,375,438 to 3,377,153 _2838 Sama_2839: Sama_2839 - sulfite reductase subunit alpha (RefSeq), at 3,377,153 to 3,378,961 _2839 Sama_2840: pntA - NAD(P) transhydrogenase subunit alpha (RefSeq), at 3,379,308 to 3,380,834 pntA Position (kb) 3377 3378 3379Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 3376.225 kb on + strand, within Sama_2838at 3376.225 kb on + strand, within Sama_2838at 3376.225 kb on + strand, within Sama_2838at 3376.226 kb on - strand, within Sama_2838at 3376.226 kb on - strand, within Sama_2838at 3376.226 kb on - strand, within Sama_2838at 3376.226 kb on - strand, within Sama_2838at 3376.265 kb on - strand, within Sama_2838at 3376.265 kb on - strand, within Sama_2838at 3376.265 kb on - strand, within Sama_2838at 3376.276 kb on - strand, within Sama_2838at 3376.361 kb on + strand, within Sama_2838at 3376.404 kb on - strand, within Sama_2838at 3376.404 kb on - strand, within Sama_2838at 3376.503 kb on - strand, within Sama_2838at 3376.519 kb on + strand, within Sama_2838at 3376.519 kb on + strand, within Sama_2838at 3376.519 kb on + strand, within Sama_2838at 3376.520 kb on - strand, within Sama_2838at 3376.523 kb on + strand, within Sama_2838at 3376.523 kb on + strand, within Sama_2838at 3376.524 kb on - strand, within Sama_2838at 3376.524 kb on - strand, within Sama_2838at 3376.524 kb on - strand, within Sama_2838at 3376.524 kb on - strand, within Sama_2838at 3376.524 kb on - strand, within Sama_2838at 3376.524 kb on - strand, within Sama_2838at 3376.524 kb on - strand, within Sama_2838at 3376.589 kb on - strand, within Sama_2838at 3376.699 kb on - strand, within Sama_2838at 3376.699 kb on - strand, within Sama_2838at 3376.737 kb on - strand, within Sama_2838at 3376.825 kb on + strand, within Sama_2838at 3376.825 kb on + strand, within Sama_2838at 3376.825 kb on + strand, within Sama_2838at 3376.825 kb on + strand, within Sama_2838at 3376.826 kb on - strand, within Sama_2838at 3376.826 kb on - strand, within Sama_2838at 3376.826 kb on - strand, within Sama_2838at 3376.881 kb on - strand, within Sama_2838at 3376.881 kb on - strand, within Sama_2838at 3376.881 kb on - strand, within Sama_2838at 3376.956 kb on + strand, within Sama_2838at 3376.978 kb on + strand, within Sama_2838at 3376.979 kb on - strand, within Sama_2838at 3376.979 kb on - strand, within Sama_2838at 3376.979 kb on - strand, within Sama_2838at 3376.979 kb on - strand, within Sama_2838at 3376.979 kb on - strand, within Sama_2838at 3376.979 kb on - strand, within Sama_2838at 3376.979 kb on - strand, within Sama_2838at 3377.009 kb on + strandat 3377.031 kb on - strandat 3377.043 kb on + strandat 3377.136 kb on - strandat 3377.155 kb on - strandat 3377.173 kb on - strandat 3377.189 kb on + strandat 3377.189 kb on + strandat 3377.202 kb on + strandat 3377.252 kb on + strandat 3377.252 kb on + strandat 3377.252 kb on + strandat 3377.253 kb on - strandat 3377.253 kb on - strandat 3377.253 kb on - strandat 3377.253 kb on - strandat 3377.253 kb on - strandat 3377.253 kb on - strandat 3377.253 kb on - strandat 3377.256 kb on - strandat 3377.256 kb on - strandat 3377.303 kb on - strandat 3377.303 kb on - strandat 3377.303 kb on - strandat 3377.303 kb on - strandat 3377.304 kb on + strandat 3377.304 kb on + strandat 3377.304 kb on + strandat 3377.304 kb on + strandat 3377.304 kb on + strandat 3377.305 kb on - strandat 3377.305 kb on - strandat 3377.305 kb on - strandat 3377.305 kb on - strandat 3377.305 kb on - strandat 3377.374 kb on - strand, within Sama_2839at 3377.421 kb on - strand, within Sama_2839at 3377.440 kb on - strand, within Sama_2839at 3377.440 kb on - strand, within Sama_2839at 3377.440 kb on - strand, within Sama_2839at 3377.454 kb on - strand, within Sama_2839at 3377.454 kb on - strand, within Sama_2839at 3377.460 kb on + strand, within Sama_2839at 3377.460 kb on + strand, within Sama_2839at 3377.461 kb on - strand, within Sama_2839at 3377.461 kb on - strand, within Sama_2839at 3377.461 kb on - strand, within Sama_2839at 3377.461 kb on - strand, within Sama_2839at 3377.462 kb on + strand, within Sama_2839at 3377.462 kb on + strand, within Sama_2839at 3377.463 kb on - strand, within Sama_2839at 3377.463 kb on - strand, within Sama_2839at 3377.563 kb on + strand, within Sama_2839at 3377.563 kb on + strand, within Sama_2839at 3377.563 kb on + strand, within Sama_2839at 3377.721 kb on + strand, within Sama_2839at 3377.741 kb on + strand, within Sama_2839at 3377.787 kb on + strand, within Sama_2839at 3377.787 kb on + strand, within Sama_2839at 3377.788 kb on - strand, within Sama_2839at 3377.788 kb on - strand, within Sama_2839at 3377.788 kb on - strand, within Sama_2839at 3377.977 kb on - strand, within Sama_2839at 3378.032 kb on - strand, within Sama_2839at 3378.114 kb on + strand, within Sama_2839at 3378.141 kb on + strand, within Sama_2839at 3378.142 kb on - strand, within Sama_2839at 3378.142 kb on - strand, within Sama_2839at 3378.142 kb on - strand, within Sama_2839at 3378.176 kb on - strand, within Sama_2839at 3378.176 kb on - strand, within Sama_2839at 3378.199 kb on + strand, within Sama_2839at 3378.221 kb on - strand, within Sama_2839at 3378.228 kb on - strand, within Sama_2839at 3378.228 kb on - strand, within Sama_2839at 3378.253 kb on + strand, within Sama_2839at 3378.254 kb on - strand, within Sama_2839at 3378.259 kb on - strand, within Sama_2839at 3378.259 kb on - strand, within Sama_2839at 3378.259 kb on - strand, within Sama_2839at 3378.259 kb on - strand, within Sama_2839at 3378.259 kb on - strand, within Sama_2839at 3378.394 kb on - strand, within Sama_2839at 3378.438 kb on - strand, within Sama_2839at 3378.438 kb on - strand, within Sama_2839at 3378.438 kb on - strand, within Sama_2839at 3378.438 kb on - strand, within Sama_2839at 3378.438 kb on - strand, within Sama_2839at 3378.438 kb on - strand, within Sama_2839at 3378.490 kb on - strand, within Sama_2839at 3378.490 kb on - strand, within Sama_2839at 3378.490 kb on - strand, within Sama_2839at 3378.565 kb on + strand, within Sama_2839at 3378.566 kb on - strand, within Sama_2839at 3378.566 kb on - strand, within Sama_2839at 3378.566 kb on - strand, within Sama_2839at 3378.567 kb on + strand, within Sama_2839at 3378.627 kb on - strand, within Sama_2839at 3378.659 kb on - strand, within Sama_2839at 3378.659 kb on - strand, within Sama_2839at 3378.660 kb on + strand, within Sama_2839at 3378.661 kb on - strand, within Sama_2839at 3378.722 kb on - strand, within Sama_2839at 3378.759 kb on + strand, within Sama_2839at 3378.759 kb on + strand, within Sama_2839at 3378.759 kb on + strand, within Sama_2839at 3378.760 kb on - strand, within Sama_2839at 3378.760 kb on - strand, within Sama_2839at 3378.760 kb on - strand, within Sama_2839at 3378.760 kb on - strand, within Sama_2839at 3378.770 kb on + strand, within Sama_2839at 3378.775 kb on + strand, within Sama_2839at 3378.809 kb on - strandat 3378.809 kb on - strandat 3378.847 kb on - strandat 3378.945 kb on - strandat 3378.983 kb on + strandat 3378.983 kb on + strandat 3378.983 kb on + strandat 3378.984 kb on - strandat 3378.984 kb on - strandat 3378.984 kb on - strandat 3378.994 kb on - strandat 3378.994 kb on - strandat 3378.994 kb on - strandat 3378.998 kb on + strandat 3378.999 kb on - strandat 3378.999 kb on - strandat 3378.999 kb on - strandat 3378.999 kb on - strandat 3378.999 kb on - strandat 3378.999 kb on - strandat 3378.999 kb on - strandat 3378.999 kb on - strandat 3378.999 kb on - strandat 3379.076 kb on - strandat 3379.080 kb on + strandat 3379.080 kb on + strandat 3379.080 kb on + strandat 3379.080 kb on + strandat 3379.081 kb on - strandat 3379.126 kb on + strandat 3379.126 kb on + strandat 3379.126 kb on + strandat 3379.126 kb on + strandat 3379.126 kb on + strandat 3379.126 kb on + strandat 3379.126 kb on + strandat 3379.126 kb on + strandat 3379.126 kb on + strandat 3379.126 kb on + strandat 3379.127 kb on - strandat 3379.127 kb on - strandat 3379.127 kb on - strandat 3379.127 kb on - strandat 3379.127 kb on - strandat 3379.127 kb on - strandat 3379.145 kb on + strandat 3379.145 kb on + strandat 3379.146 kb on - strandat 3379.146 kb on - strandat 3379.192 kb on + strandat 3379.192 kb on + strandat 3379.192 kb on + strandat 3379.192 kb on + strandat 3379.192 kb on + strandat 3379.193 kb on - strandat 3379.210 kb on - strandat 3379.477 kb on + strand, within pntAat 3379.477 kb on + strand, within pntAat 3379.477 kb on + strand, within pntAat 3379.477 kb on + strand, within pntAat 3379.477 kb on + strand, within pntAat 3379.478 kb on - strand, within pntAat 3379.478 kb on - strand, within pntAat 3379.506 kb on - strand, within pntAat 3379.506 kb on - strand, within pntAat 3379.506 kb on - strand, within pntAat 3379.511 kb on + strand, within pntAat 3379.512 kb on - strand, within pntAat 3379.540 kb on + strand, within pntAat 3379.540 kb on + strand, within pntAat 3379.541 kb on - strand, within pntAat 3379.541 kb on - strand, within pntAat 3379.541 kb on - strand, within pntAat 3379.577 kb on + strand, within pntAat 3379.615 kb on + strand, within pntAat 3379.616 kb on - strand, within pntAat 3379.629 kb on - strand, within pntAat 3379.629 kb on - strand, within pntAat 3379.717 kb on - strand, within pntAat 3379.847 kb on + strand, within pntAat 3379.847 kb on + strand, within pntAat 3379.848 kb on - strand, within pntAat 3379.848 kb on - strand, within pntA

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20
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3,376,225 + Sama_2838 0.46 -2.3
3,376,225 + Sama_2838 0.46 -0.3
3,376,225 + Sama_2838 0.46 -0.5
3,376,226 - Sama_2838 0.46 -3.1
3,376,226 - Sama_2838 0.46 -0.3
3,376,226 - Sama_2838 0.46 -3.3
3,376,226 - Sama_2838 0.46 -2.5
3,376,265 - Sama_2838 0.48 -1.8
3,376,265 - Sama_2838 0.48 -3.1
3,376,265 - Sama_2838 0.48 -3.4
3,376,276 - Sama_2838 0.49 -2.3
3,376,361 + Sama_2838 0.54 -2.1
3,376,404 - Sama_2838 0.56 -1.8
3,376,404 - Sama_2838 0.56 -2.9
3,376,503 - Sama_2838 0.62 -1.1
3,376,519 + Sama_2838 0.63 -3.9
3,376,519 + Sama_2838 0.63 -1.5
3,376,519 + Sama_2838 0.63 -3.2
3,376,520 - Sama_2838 0.63 -0.1
3,376,523 + Sama_2838 0.63 -2.6
3,376,523 + Sama_2838 0.63 -2.1
3,376,524 - Sama_2838 0.63 -2.8
3,376,524 - Sama_2838 0.63 -5.1
3,376,524 - Sama_2838 0.63 -2.8
3,376,524 - Sama_2838 0.63 -2.6
3,376,524 - Sama_2838 0.63 -2.1
3,376,524 - Sama_2838 0.63 -2.5
3,376,524 - Sama_2838 0.63 +0.5
3,376,589 - Sama_2838 0.67 -4.1
3,376,699 - Sama_2838 0.73 -2.1
3,376,699 - Sama_2838 0.73 -2.3
3,376,737 - Sama_2838 0.76 -2.4
3,376,825 + Sama_2838 0.81 -3.5
3,376,825 + Sama_2838 0.81 -4.1
3,376,825 + Sama_2838 0.81 -3.9
3,376,825 + Sama_2838 0.81 -0.5
3,376,826 - Sama_2838 0.81 -1.5
3,376,826 - Sama_2838 0.81 -3.1
3,376,826 - Sama_2838 0.81 -2.3
3,376,881 - Sama_2838 0.84 -2.8
3,376,881 - Sama_2838 0.84 -1.8
3,376,881 - Sama_2838 0.84 -0.5
3,376,956 + Sama_2838 0.88 -1.1
3,376,978 + Sama_2838 0.90 -3.1
3,376,979 - Sama_2838 0.90 -1.5
3,376,979 - Sama_2838 0.90 -2.3
3,376,979 - Sama_2838 0.90 -2.1
3,376,979 - Sama_2838 0.90 -4.5
3,376,979 - Sama_2838 0.90 -3.7
3,376,979 - Sama_2838 0.90 -2.8
3,376,979 - Sama_2838 0.90 -2.1
3,377,009 + -3.6
3,377,031 - -1.5
3,377,043 + -2.5
3,377,136 - -3.2
3,377,155 - -2.9
3,377,173 - -3.9
3,377,189 + -2.1
3,377,189 + -1.8
3,377,202 + -2.1
3,377,252 + -2.8
3,377,252 + -2.5
3,377,252 + -2.8
3,377,253 - -3.2
3,377,253 - -1.1
3,377,253 - -2.5
3,377,253 - -2.1
3,377,253 - -3.1
3,377,253 - -3.4
3,377,253 - -1.3
3,377,256 - -2.6
3,377,256 - -1.5
3,377,303 - -2.3
3,377,303 - -3.4
3,377,303 - -2.7
3,377,303 - -1.1
3,377,304 + -2.1
3,377,304 + -2.6
3,377,304 + -1.8
3,377,304 + -1.8
3,377,304 + -2.6
3,377,305 - -2.9
3,377,305 - -3.7
3,377,305 - -2.6
3,377,305 - -2.1
3,377,305 - -1.5
3,377,374 - Sama_2839 0.12 -2.9
3,377,421 - Sama_2839 0.15 -0.6
3,377,440 - Sama_2839 0.16 -2.1
3,377,440 - Sama_2839 0.16 -2.6
3,377,440 - Sama_2839 0.16 -2.8
3,377,454 - Sama_2839 0.17 -3.1
3,377,454 - Sama_2839 0.17 -2.3
3,377,460 + Sama_2839 0.17 -2.8
3,377,460 + Sama_2839 0.17 -4.3
3,377,461 - Sama_2839 0.17 -0.5
3,377,461 - Sama_2839 0.17 -3.4
3,377,461 - Sama_2839 0.17 -3.7
3,377,461 - Sama_2839 0.17 -2.6
3,377,462 + Sama_2839 0.17 -3.3
3,377,462 + Sama_2839 0.17 -4.3
3,377,463 - Sama_2839 0.17 -1.6
3,377,463 - Sama_2839 0.17 -4.9
3,377,563 + Sama_2839 0.23 -1.5
3,377,563 + Sama_2839 0.23 -2.2
3,377,563 + Sama_2839 0.23 -4.1
3,377,721 + Sama_2839 0.31 -1.5
3,377,741 + Sama_2839 0.33 -1.5
3,377,787 + Sama_2839 0.35 -2.8
3,377,787 + Sama_2839 0.35 -1.1
3,377,788 - Sama_2839 0.35 -3.0
3,377,788 - Sama_2839 0.35 -3.5
3,377,788 - Sama_2839 0.35 -3.6
3,377,977 - Sama_2839 0.46 -2.6
3,378,032 - Sama_2839 0.49 -2.0
3,378,114 + Sama_2839 0.53 -1.1
3,378,141 + Sama_2839 0.55 -1.1
3,378,142 - Sama_2839 0.55 -2.6
3,378,142 - Sama_2839 0.55 -2.8
3,378,142 - Sama_2839 0.55 -2.5
3,378,176 - Sama_2839 0.57 -3.2
3,378,176 - Sama_2839 0.57 -2.3
3,378,199 + Sama_2839 0.58 -0.5
3,378,221 - Sama_2839 0.59 -4.3
3,378,228 - Sama_2839 0.59 -4.7
3,378,228 - Sama_2839 0.59 -3.6
3,378,253 + Sama_2839 0.61 -3.5
3,378,254 - Sama_2839 0.61 -4.6
3,378,259 - Sama_2839 0.61 -3.2
3,378,259 - Sama_2839 0.61 -2.9
3,378,259 - Sama_2839 0.61 -2.6
3,378,259 - Sama_2839 0.61 -1.8
3,378,259 - Sama_2839 0.61 -3.7
3,378,394 - Sama_2839 0.69 -2.6
3,378,438 - Sama_2839 0.71 -4.7
3,378,438 - Sama_2839 0.71 -3.7
3,378,438 - Sama_2839 0.71 -3.9
3,378,438 - Sama_2839 0.71 -3.2
3,378,438 - Sama_2839 0.71 -0.5
3,378,438 - Sama_2839 0.71 -2.1
3,378,490 - Sama_2839 0.74 -2.4
3,378,490 - Sama_2839 0.74 -4.8
3,378,490 - Sama_2839 0.74 -1.8
3,378,565 + Sama_2839 0.78 -2.1
3,378,566 - Sama_2839 0.78 -4.1
3,378,566 - Sama_2839 0.78 -1.8
3,378,566 - Sama_2839 0.78 -2.6
3,378,567 + Sama_2839 0.78 -2.9
3,378,627 - Sama_2839 0.81 -1.8
3,378,659 - Sama_2839 0.83 -2.2
3,378,659 - Sama_2839 0.83 -4.7
3,378,660 + Sama_2839 0.83 -3.8
3,378,661 - Sama_2839 0.83 -1.7
3,378,722 - Sama_2839 0.87 -5.3
3,378,759 + Sama_2839 0.89 -0.5
3,378,759 + Sama_2839 0.89 -1.1
3,378,759 + Sama_2839 0.89 -1.6
3,378,760 - Sama_2839 0.89 -1.8
3,378,760 - Sama_2839 0.89 -3.8
3,378,760 - Sama_2839 0.89 -3.3
3,378,760 - Sama_2839 0.89 -1.1
3,378,770 + Sama_2839 0.89 -2.6
3,378,775 + Sama_2839 0.90 -2.6
3,378,809 - -1.5
3,378,809 - -2.6
3,378,847 - -4.0
3,378,945 - -3.9
3,378,983 + -2.6
3,378,983 + -5.1
3,378,983 + -2.6
3,378,984 - -0.4
3,378,984 - -1.6
3,378,984 - -2.3
3,378,994 - -1.6
3,378,994 - -1.4
3,378,994 - +0.2
3,378,998 + -3.4
3,378,999 - -0.1
3,378,999 - -1.1
3,378,999 - -1.3
3,378,999 - -0.8
3,378,999 - -1.6
3,378,999 - -0.4
3,378,999 - -0.7
3,378,999 - -0.9
3,378,999 - -0.1
3,379,076 - -0.7
3,379,080 + +0.4
3,379,080 + +0.2
3,379,080 + -0.5
3,379,080 + -0.8
3,379,081 - +0.1
3,379,126 + +0.3
3,379,126 + +0.1
3,379,126 + -0.0
3,379,126 + +0.3
3,379,126 + -0.0
3,379,126 + +0.2
3,379,126 + +2.7
3,379,126 + +1.9
3,379,126 + +3.9
3,379,126 + +0.5
3,379,127 - -0.6
3,379,127 - -0.0
3,379,127 - -0.7
3,379,127 - +0.1
3,379,127 - +0.5
3,379,127 - -0.5
3,379,145 + +1.0
3,379,145 + -0.5
3,379,146 - +1.5
3,379,146 - +0.2
3,379,192 + -0.1
3,379,192 + -1.8
3,379,192 + -0.2
3,379,192 + -1.8
3,379,192 + -0.5
3,379,193 - +0.5
3,379,210 - -0.9
3,379,477 + pntA Sama_2840 0.11 +1.5
3,379,477 + pntA Sama_2840 0.11 +0.9
3,379,477 + pntA Sama_2840 0.11 +0.2
3,379,477 + pntA Sama_2840 0.11 +0.8
3,379,477 + pntA Sama_2840 0.11 -0.7
3,379,478 - pntA Sama_2840 0.11 -0.1
3,379,478 - pntA Sama_2840 0.11 +0.5
3,379,506 - pntA Sama_2840 0.13 +1.2
3,379,506 - pntA Sama_2840 0.13 -0.3
3,379,506 - pntA Sama_2840 0.13 +0.1
3,379,511 + pntA Sama_2840 0.13 +1.3
3,379,512 - pntA Sama_2840 0.13 +0.5
3,379,540 + pntA Sama_2840 0.15 +1.4
3,379,540 + pntA Sama_2840 0.15 +0.6
3,379,541 - pntA Sama_2840 0.15 +0.5
3,379,541 - pntA Sama_2840 0.15 +1.8
3,379,541 - pntA Sama_2840 0.15 +1.0
3,379,577 + pntA Sama_2840 0.18 +0.8
3,379,615 + pntA Sama_2840 0.20 +0.1
3,379,616 - pntA Sama_2840 0.20 +0.5
3,379,629 - pntA Sama_2840 0.21 +0.1
3,379,629 - pntA Sama_2840 0.21 +0.2
3,379,717 - pntA Sama_2840 0.27 +1.0
3,379,847 + pntA Sama_2840 0.35 +0.3
3,379,847 + pntA Sama_2840 0.35 -0.0
3,379,848 - pntA Sama_2840 0.35 +0.8
3,379,848 - pntA Sama_2840 0.35 +1.0

Or see this region's nucleotide sequence