Experiment: Tween 20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_2838 and Sama_2839 overlap by 1 nucleotides Sama_2839 and pntA are separated by 346 nucleotides
Sama_2838: Sama_2838 - sulfite reductase subunit beta (RefSeq), at 3,375,438 to 3,377,153
_2838
Sama_2839: Sama_2839 - sulfite reductase subunit alpha (RefSeq), at 3,377,153 to 3,378,961
_2839
Sama_2840: pntA - NAD(P) transhydrogenase subunit alpha (RefSeq), at 3,379,308 to 3,380,834
pntA
Position (kb)
3377
3378
3379 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 3376.225 kb on + strand, within Sama_2838 at 3376.225 kb on + strand, within Sama_2838 at 3376.225 kb on + strand, within Sama_2838 at 3376.226 kb on - strand, within Sama_2838 at 3376.226 kb on - strand, within Sama_2838 at 3376.226 kb on - strand, within Sama_2838 at 3376.226 kb on - strand, within Sama_2838 at 3376.265 kb on - strand, within Sama_2838 at 3376.265 kb on - strand, within Sama_2838 at 3376.265 kb on - strand, within Sama_2838 at 3376.276 kb on - strand, within Sama_2838 at 3376.361 kb on + strand, within Sama_2838 at 3376.404 kb on - strand, within Sama_2838 at 3376.404 kb on - strand, within Sama_2838 at 3376.503 kb on - strand, within Sama_2838 at 3376.519 kb on + strand, within Sama_2838 at 3376.519 kb on + strand, within Sama_2838 at 3376.519 kb on + strand, within Sama_2838 at 3376.520 kb on - strand, within Sama_2838 at 3376.523 kb on + strand, within Sama_2838 at 3376.523 kb on + strand, within Sama_2838 at 3376.524 kb on - strand, within Sama_2838 at 3376.524 kb on - strand, within Sama_2838 at 3376.524 kb on - strand, within Sama_2838 at 3376.524 kb on - strand, within Sama_2838 at 3376.524 kb on - strand, within Sama_2838 at 3376.524 kb on - strand, within Sama_2838 at 3376.524 kb on - strand, within Sama_2838 at 3376.589 kb on - strand, within Sama_2838 at 3376.699 kb on - strand, within Sama_2838 at 3376.699 kb on - strand, within Sama_2838 at 3376.737 kb on - strand, within Sama_2838 at 3376.825 kb on + strand, within Sama_2838 at 3376.825 kb on + strand, within Sama_2838 at 3376.825 kb on + strand, within Sama_2838 at 3376.825 kb on + strand, within Sama_2838 at 3376.826 kb on - strand, within Sama_2838 at 3376.826 kb on - strand, within Sama_2838 at 3376.826 kb on - strand, within Sama_2838 at 3376.881 kb on - strand, within Sama_2838 at 3376.881 kb on - strand, within Sama_2838 at 3376.881 kb on - strand, within Sama_2838 at 3376.956 kb on + strand, within Sama_2838 at 3376.978 kb on + strand, within Sama_2838 at 3376.979 kb on - strand, within Sama_2838 at 3376.979 kb on - strand, within Sama_2838 at 3376.979 kb on - strand, within Sama_2838 at 3376.979 kb on - strand, within Sama_2838 at 3376.979 kb on - strand, within Sama_2838 at 3376.979 kb on - strand, within Sama_2838 at 3376.979 kb on - strand, within Sama_2838 at 3377.009 kb on + strand at 3377.031 kb on - strand at 3377.043 kb on + strand at 3377.136 kb on - strand at 3377.155 kb on - strand at 3377.173 kb on - strand at 3377.189 kb on + strand at 3377.189 kb on + strand at 3377.202 kb on + strand at 3377.252 kb on + strand at 3377.252 kb on + strand at 3377.252 kb on + strand at 3377.253 kb on - strand at 3377.253 kb on - strand at 3377.253 kb on - strand at 3377.253 kb on - strand at 3377.253 kb on - strand at 3377.253 kb on - strand at 3377.253 kb on - strand at 3377.256 kb on - strand at 3377.256 kb on - strand at 3377.303 kb on - strand at 3377.303 kb on - strand at 3377.303 kb on - strand at 3377.303 kb on - strand at 3377.304 kb on + strand at 3377.304 kb on + strand at 3377.304 kb on + strand at 3377.304 kb on + strand at 3377.304 kb on + strand at 3377.305 kb on - strand at 3377.305 kb on - strand at 3377.305 kb on - strand at 3377.305 kb on - strand at 3377.305 kb on - strand at 3377.374 kb on - strand, within Sama_2839 at 3377.421 kb on - strand, within Sama_2839 at 3377.440 kb on - strand, within Sama_2839 at 3377.440 kb on - strand, within Sama_2839 at 3377.440 kb on - strand, within Sama_2839 at 3377.454 kb on - strand, within Sama_2839 at 3377.454 kb on - strand, within Sama_2839 at 3377.460 kb on + strand, within Sama_2839 at 3377.460 kb on + strand, within Sama_2839 at 3377.461 kb on - strand, within Sama_2839 at 3377.461 kb on - strand, within Sama_2839 at 3377.461 kb on - strand, within Sama_2839 at 3377.461 kb on - strand, within Sama_2839 at 3377.462 kb on + strand, within Sama_2839 at 3377.462 kb on + strand, within Sama_2839 at 3377.463 kb on - strand, within Sama_2839 at 3377.463 kb on - strand, within Sama_2839 at 3377.563 kb on + strand, within Sama_2839 at 3377.563 kb on + strand, within Sama_2839 at 3377.563 kb on + strand, within Sama_2839 at 3377.721 kb on + strand, within Sama_2839 at 3377.741 kb on + strand, within Sama_2839 at 3377.787 kb on + strand, within Sama_2839 at 3377.787 kb on + strand, within Sama_2839 at 3377.788 kb on - strand, within Sama_2839 at 3377.788 kb on - strand, within Sama_2839 at 3377.788 kb on - strand, within Sama_2839 at 3377.977 kb on - strand, within Sama_2839 at 3378.032 kb on - strand, within Sama_2839 at 3378.114 kb on + strand, within Sama_2839 at 3378.141 kb on + strand, within Sama_2839 at 3378.142 kb on - strand, within Sama_2839 at 3378.142 kb on - strand, within Sama_2839 at 3378.142 kb on - strand, within Sama_2839 at 3378.176 kb on - strand, within Sama_2839 at 3378.176 kb on - strand, within Sama_2839 at 3378.199 kb on + strand, within Sama_2839 at 3378.221 kb on - strand, within Sama_2839 at 3378.228 kb on - strand, within Sama_2839 at 3378.228 kb on - strand, within Sama_2839 at 3378.253 kb on + strand, within Sama_2839 at 3378.254 kb on - strand, within Sama_2839 at 3378.259 kb on - strand, within Sama_2839 at 3378.259 kb on - strand, within Sama_2839 at 3378.259 kb on - strand, within Sama_2839 at 3378.259 kb on - strand, within Sama_2839 at 3378.259 kb on - strand, within Sama_2839 at 3378.394 kb on - strand, within Sama_2839 at 3378.438 kb on - strand, within Sama_2839 at 3378.438 kb on - strand, within Sama_2839 at 3378.438 kb on - strand, within Sama_2839 at 3378.438 kb on - strand, within Sama_2839 at 3378.438 kb on - strand, within Sama_2839 at 3378.438 kb on - strand, within Sama_2839 at 3378.490 kb on - strand, within Sama_2839 at 3378.490 kb on - strand, within Sama_2839 at 3378.490 kb on - strand, within Sama_2839 at 3378.565 kb on + strand, within Sama_2839 at 3378.566 kb on - strand, within Sama_2839 at 3378.566 kb on - strand, within Sama_2839 at 3378.566 kb on - strand, within Sama_2839 at 3378.567 kb on + strand, within Sama_2839 at 3378.627 kb on - strand, within Sama_2839 at 3378.659 kb on - strand, within Sama_2839 at 3378.659 kb on - strand, within Sama_2839 at 3378.660 kb on + strand, within Sama_2839 at 3378.661 kb on - strand, within Sama_2839 at 3378.722 kb on - strand, within Sama_2839 at 3378.759 kb on + strand, within Sama_2839 at 3378.759 kb on + strand, within Sama_2839 at 3378.759 kb on + strand, within Sama_2839 at 3378.760 kb on - strand, within Sama_2839 at 3378.760 kb on - strand, within Sama_2839 at 3378.760 kb on - strand, within Sama_2839 at 3378.760 kb on - strand, within Sama_2839 at 3378.770 kb on + strand, within Sama_2839 at 3378.775 kb on + strand, within Sama_2839 at 3378.809 kb on - strand at 3378.809 kb on - strand at 3378.847 kb on - strand at 3378.945 kb on - strand at 3378.983 kb on + strand at 3378.983 kb on + strand at 3378.983 kb on + strand at 3378.984 kb on - strand at 3378.984 kb on - strand at 3378.984 kb on - strand at 3378.994 kb on - strand at 3378.994 kb on - strand at 3378.994 kb on - strand at 3378.998 kb on + strand at 3378.999 kb on - strand at 3378.999 kb on - strand at 3378.999 kb on - strand at 3378.999 kb on - strand at 3378.999 kb on - strand at 3378.999 kb on - strand at 3378.999 kb on - strand at 3378.999 kb on - strand at 3378.999 kb on - strand at 3379.076 kb on - strand at 3379.080 kb on + strand at 3379.080 kb on + strand at 3379.080 kb on + strand at 3379.080 kb on + strand at 3379.081 kb on - strand at 3379.126 kb on + strand at 3379.126 kb on + strand at 3379.126 kb on + strand at 3379.126 kb on + strand at 3379.126 kb on + strand at 3379.126 kb on + strand at 3379.126 kb on + strand at 3379.126 kb on + strand at 3379.126 kb on + strand at 3379.126 kb on + strand at 3379.127 kb on - strand at 3379.127 kb on - strand at 3379.127 kb on - strand at 3379.127 kb on - strand at 3379.127 kb on - strand at 3379.127 kb on - strand at 3379.145 kb on + strand at 3379.145 kb on + strand at 3379.146 kb on - strand at 3379.146 kb on - strand at 3379.192 kb on + strand at 3379.192 kb on + strand at 3379.192 kb on + strand at 3379.192 kb on + strand at 3379.192 kb on + strand at 3379.193 kb on - strand at 3379.210 kb on - strand at 3379.477 kb on + strand, within pntA at 3379.477 kb on + strand, within pntA at 3379.477 kb on + strand, within pntA at 3379.477 kb on + strand, within pntA at 3379.477 kb on + strand, within pntA at 3379.478 kb on - strand, within pntA at 3379.478 kb on - strand, within pntA at 3379.506 kb on - strand, within pntA at 3379.506 kb on - strand, within pntA at 3379.506 kb on - strand, within pntA at 3379.511 kb on + strand, within pntA at 3379.512 kb on - strand, within pntA at 3379.540 kb on + strand, within pntA at 3379.540 kb on + strand, within pntA at 3379.541 kb on - strand, within pntA at 3379.541 kb on - strand, within pntA at 3379.541 kb on - strand, within pntA at 3379.577 kb on + strand, within pntA at 3379.615 kb on + strand, within pntA at 3379.616 kb on - strand, within pntA at 3379.629 kb on - strand, within pntA at 3379.629 kb on - strand, within pntA at 3379.717 kb on - strand, within pntA at 3379.847 kb on + strand, within pntA at 3379.847 kb on + strand, within pntA at 3379.848 kb on - strand, within pntA at 3379.848 kb on - strand, within pntA
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 remove 3,376,225 + Sama_2838 0.46 -2.3 3,376,225 + Sama_2838 0.46 -0.3 3,376,225 + Sama_2838 0.46 -0.5 3,376,226 - Sama_2838 0.46 -3.1 3,376,226 - Sama_2838 0.46 -0.3 3,376,226 - Sama_2838 0.46 -3.3 3,376,226 - Sama_2838 0.46 -2.5 3,376,265 - Sama_2838 0.48 -1.8 3,376,265 - Sama_2838 0.48 -3.1 3,376,265 - Sama_2838 0.48 -3.4 3,376,276 - Sama_2838 0.49 -2.3 3,376,361 + Sama_2838 0.54 -2.1 3,376,404 - Sama_2838 0.56 -1.8 3,376,404 - Sama_2838 0.56 -2.9 3,376,503 - Sama_2838 0.62 -1.1 3,376,519 + Sama_2838 0.63 -3.9 3,376,519 + Sama_2838 0.63 -1.5 3,376,519 + Sama_2838 0.63 -3.2 3,376,520 - Sama_2838 0.63 -0.1 3,376,523 + Sama_2838 0.63 -2.6 3,376,523 + Sama_2838 0.63 -2.1 3,376,524 - Sama_2838 0.63 -2.8 3,376,524 - Sama_2838 0.63 -5.1 3,376,524 - Sama_2838 0.63 -2.8 3,376,524 - Sama_2838 0.63 -2.6 3,376,524 - Sama_2838 0.63 -2.1 3,376,524 - Sama_2838 0.63 -2.5 3,376,524 - Sama_2838 0.63 +0.5 3,376,589 - Sama_2838 0.67 -4.1 3,376,699 - Sama_2838 0.73 -2.1 3,376,699 - Sama_2838 0.73 -2.3 3,376,737 - Sama_2838 0.76 -2.4 3,376,825 + Sama_2838 0.81 -3.5 3,376,825 + Sama_2838 0.81 -4.1 3,376,825 + Sama_2838 0.81 -3.9 3,376,825 + Sama_2838 0.81 -0.5 3,376,826 - Sama_2838 0.81 -1.5 3,376,826 - Sama_2838 0.81 -3.1 3,376,826 - Sama_2838 0.81 -2.3 3,376,881 - Sama_2838 0.84 -2.8 3,376,881 - Sama_2838 0.84 -1.8 3,376,881 - Sama_2838 0.84 -0.5 3,376,956 + Sama_2838 0.88 -1.1 3,376,978 + Sama_2838 0.90 -3.1 3,376,979 - Sama_2838 0.90 -1.5 3,376,979 - Sama_2838 0.90 -2.3 3,376,979 - Sama_2838 0.90 -2.1 3,376,979 - Sama_2838 0.90 -4.5 3,376,979 - Sama_2838 0.90 -3.7 3,376,979 - Sama_2838 0.90 -2.8 3,376,979 - Sama_2838 0.90 -2.1 3,377,009 + -3.6 3,377,031 - -1.5 3,377,043 + -2.5 3,377,136 - -3.2 3,377,155 - -2.9 3,377,173 - -3.9 3,377,189 + -2.1 3,377,189 + -1.8 3,377,202 + -2.1 3,377,252 + -2.8 3,377,252 + -2.5 3,377,252 + -2.8 3,377,253 - -3.2 3,377,253 - -1.1 3,377,253 - -2.5 3,377,253 - -2.1 3,377,253 - -3.1 3,377,253 - -3.4 3,377,253 - -1.3 3,377,256 - -2.6 3,377,256 - -1.5 3,377,303 - -2.3 3,377,303 - -3.4 3,377,303 - -2.7 3,377,303 - -1.1 3,377,304 + -2.1 3,377,304 + -2.6 3,377,304 + -1.8 3,377,304 + -1.8 3,377,304 + -2.6 3,377,305 - -2.9 3,377,305 - -3.7 3,377,305 - -2.6 3,377,305 - -2.1 3,377,305 - -1.5 3,377,374 - Sama_2839 0.12 -2.9 3,377,421 - Sama_2839 0.15 -0.6 3,377,440 - Sama_2839 0.16 -2.1 3,377,440 - Sama_2839 0.16 -2.6 3,377,440 - Sama_2839 0.16 -2.8 3,377,454 - Sama_2839 0.17 -3.1 3,377,454 - Sama_2839 0.17 -2.3 3,377,460 + Sama_2839 0.17 -2.8 3,377,460 + Sama_2839 0.17 -4.3 3,377,461 - Sama_2839 0.17 -0.5 3,377,461 - Sama_2839 0.17 -3.4 3,377,461 - Sama_2839 0.17 -3.7 3,377,461 - Sama_2839 0.17 -2.6 3,377,462 + Sama_2839 0.17 -3.3 3,377,462 + Sama_2839 0.17 -4.3 3,377,463 - Sama_2839 0.17 -1.6 3,377,463 - Sama_2839 0.17 -4.9 3,377,563 + Sama_2839 0.23 -1.5 3,377,563 + Sama_2839 0.23 -2.2 3,377,563 + Sama_2839 0.23 -4.1 3,377,721 + Sama_2839 0.31 -1.5 3,377,741 + Sama_2839 0.33 -1.5 3,377,787 + Sama_2839 0.35 -2.8 3,377,787 + Sama_2839 0.35 -1.1 3,377,788 - Sama_2839 0.35 -3.0 3,377,788 - Sama_2839 0.35 -3.5 3,377,788 - Sama_2839 0.35 -3.6 3,377,977 - Sama_2839 0.46 -2.6 3,378,032 - Sama_2839 0.49 -2.0 3,378,114 + Sama_2839 0.53 -1.1 3,378,141 + Sama_2839 0.55 -1.1 3,378,142 - Sama_2839 0.55 -2.6 3,378,142 - Sama_2839 0.55 -2.8 3,378,142 - Sama_2839 0.55 -2.5 3,378,176 - Sama_2839 0.57 -3.2 3,378,176 - Sama_2839 0.57 -2.3 3,378,199 + Sama_2839 0.58 -0.5 3,378,221 - Sama_2839 0.59 -4.3 3,378,228 - Sama_2839 0.59 -4.7 3,378,228 - Sama_2839 0.59 -3.6 3,378,253 + Sama_2839 0.61 -3.5 3,378,254 - Sama_2839 0.61 -4.6 3,378,259 - Sama_2839 0.61 -3.2 3,378,259 - Sama_2839 0.61 -2.9 3,378,259 - Sama_2839 0.61 -2.6 3,378,259 - Sama_2839 0.61 -1.8 3,378,259 - Sama_2839 0.61 -3.7 3,378,394 - Sama_2839 0.69 -2.6 3,378,438 - Sama_2839 0.71 -4.7 3,378,438 - Sama_2839 0.71 -3.7 3,378,438 - Sama_2839 0.71 -3.9 3,378,438 - Sama_2839 0.71 -3.2 3,378,438 - Sama_2839 0.71 -0.5 3,378,438 - Sama_2839 0.71 -2.1 3,378,490 - Sama_2839 0.74 -2.4 3,378,490 - Sama_2839 0.74 -4.8 3,378,490 - Sama_2839 0.74 -1.8 3,378,565 + Sama_2839 0.78 -2.1 3,378,566 - Sama_2839 0.78 -4.1 3,378,566 - Sama_2839 0.78 -1.8 3,378,566 - Sama_2839 0.78 -2.6 3,378,567 + Sama_2839 0.78 -2.9 3,378,627 - Sama_2839 0.81 -1.8 3,378,659 - Sama_2839 0.83 -2.2 3,378,659 - Sama_2839 0.83 -4.7 3,378,660 + Sama_2839 0.83 -3.8 3,378,661 - Sama_2839 0.83 -1.7 3,378,722 - Sama_2839 0.87 -5.3 3,378,759 + Sama_2839 0.89 -0.5 3,378,759 + Sama_2839 0.89 -1.1 3,378,759 + Sama_2839 0.89 -1.6 3,378,760 - Sama_2839 0.89 -1.8 3,378,760 - Sama_2839 0.89 -3.8 3,378,760 - Sama_2839 0.89 -3.3 3,378,760 - Sama_2839 0.89 -1.1 3,378,770 + Sama_2839 0.89 -2.6 3,378,775 + Sama_2839 0.90 -2.6 3,378,809 - -1.5 3,378,809 - -2.6 3,378,847 - -4.0 3,378,945 - -3.9 3,378,983 + -2.6 3,378,983 + -5.1 3,378,983 + -2.6 3,378,984 - -0.4 3,378,984 - -1.6 3,378,984 - -2.3 3,378,994 - -1.6 3,378,994 - -1.4 3,378,994 - +0.2 3,378,998 + -3.4 3,378,999 - -0.1 3,378,999 - -1.1 3,378,999 - -1.3 3,378,999 - -0.8 3,378,999 - -1.6 3,378,999 - -0.4 3,378,999 - -0.7 3,378,999 - -0.9 3,378,999 - -0.1 3,379,076 - -0.7 3,379,080 + +0.4 3,379,080 + +0.2 3,379,080 + -0.5 3,379,080 + -0.8 3,379,081 - +0.1 3,379,126 + +0.3 3,379,126 + +0.1 3,379,126 + -0.0 3,379,126 + +0.3 3,379,126 + -0.0 3,379,126 + +0.2 3,379,126 + +2.7 3,379,126 + +1.9 3,379,126 + +3.9 3,379,126 + +0.5 3,379,127 - -0.6 3,379,127 - -0.0 3,379,127 - -0.7 3,379,127 - +0.1 3,379,127 - +0.5 3,379,127 - -0.5 3,379,145 + +1.0 3,379,145 + -0.5 3,379,146 - +1.5 3,379,146 - +0.2 3,379,192 + -0.1 3,379,192 + -1.8 3,379,192 + -0.2 3,379,192 + -1.8 3,379,192 + -0.5 3,379,193 - +0.5 3,379,210 - -0.9 3,379,477 + pntA Sama_2840 0.11 +1.5 3,379,477 + pntA Sama_2840 0.11 +0.9 3,379,477 + pntA Sama_2840 0.11 +0.2 3,379,477 + pntA Sama_2840 0.11 +0.8 3,379,477 + pntA Sama_2840 0.11 -0.7 3,379,478 - pntA Sama_2840 0.11 -0.1 3,379,478 - pntA Sama_2840 0.11 +0.5 3,379,506 - pntA Sama_2840 0.13 +1.2 3,379,506 - pntA Sama_2840 0.13 -0.3 3,379,506 - pntA Sama_2840 0.13 +0.1 3,379,511 + pntA Sama_2840 0.13 +1.3 3,379,512 - pntA Sama_2840 0.13 +0.5 3,379,540 + pntA Sama_2840 0.15 +1.4 3,379,540 + pntA Sama_2840 0.15 +0.6 3,379,541 - pntA Sama_2840 0.15 +0.5 3,379,541 - pntA Sama_2840 0.15 +1.8 3,379,541 - pntA Sama_2840 0.15 +1.0 3,379,577 + pntA Sama_2840 0.18 +0.8 3,379,615 + pntA Sama_2840 0.20 +0.1 3,379,616 - pntA Sama_2840 0.20 +0.5 3,379,629 - pntA Sama_2840 0.21 +0.1 3,379,629 - pntA Sama_2840 0.21 +0.2 3,379,717 - pntA Sama_2840 0.27 +1.0 3,379,847 + pntA Sama_2840 0.35 +0.3 3,379,847 + pntA Sama_2840 0.35 -0.0 3,379,848 - pntA Sama_2840 0.35 +0.8 3,379,848 - pntA Sama_2840 0.35 +1.0
Or see this region's nucleotide sequence