Experiment: Tween 20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_2836 and Sama_2837 are separated by 69 nucleotides Sama_2837 and Sama_2838 are separated by 97 nucleotides Sama_2838 and Sama_2839 overlap by 1 nucleotides
Sama_2836: Sama_2836 - thiol:disulfide interchange protein, putative (RefSeq), at 3,374,003 to 3,374,542
_2836
Sama_2837: Sama_2837 - phosphoadenosine phosphosulfate reductase (RefSeq), at 3,374,612 to 3,375,340
_2837
Sama_2838: Sama_2838 - sulfite reductase subunit beta (RefSeq), at 3,375,438 to 3,377,153
_2838
Sama_2839: Sama_2839 - sulfite reductase subunit alpha (RefSeq), at 3,377,153 to 3,378,961
_2839
Position (kb)
3375
3376
3377
3378 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 3374.440 kb on + strand, within Sama_2836 at 3374.440 kb on + strand, within Sama_2836 at 3374.441 kb on - strand, within Sama_2836 at 3374.441 kb on - strand, within Sama_2836 at 3374.450 kb on + strand, within Sama_2836 at 3374.451 kb on - strand, within Sama_2836 at 3374.478 kb on + strand, within Sama_2836 at 3374.478 kb on + strand, within Sama_2836 at 3374.478 kb on + strand, within Sama_2836 at 3374.478 kb on + strand, within Sama_2836 at 3374.478 kb on + strand, within Sama_2836 at 3374.478 kb on + strand, within Sama_2836 at 3374.478 kb on + strand, within Sama_2836 at 3374.479 kb on - strand, within Sama_2836 at 3374.479 kb on - strand, within Sama_2836 at 3374.479 kb on - strand, within Sama_2836 at 3374.479 kb on - strand, within Sama_2836 at 3374.613 kb on + strand at 3374.613 kb on + strand at 3374.614 kb on - strand at 3374.614 kb on - strand at 3374.614 kb on - strand at 3374.720 kb on + strand, within Sama_2837 at 3374.720 kb on + strand, within Sama_2837 at 3374.720 kb on + strand, within Sama_2837 at 3374.721 kb on - strand, within Sama_2837 at 3374.721 kb on - strand, within Sama_2837 at 3374.721 kb on - strand, within Sama_2837 at 3374.724 kb on + strand, within Sama_2837 at 3374.724 kb on + strand, within Sama_2837 at 3374.724 kb on + strand, within Sama_2837 at 3374.724 kb on + strand, within Sama_2837 at 3374.724 kb on + strand, within Sama_2837 at 3374.725 kb on - strand, within Sama_2837 at 3374.725 kb on - strand, within Sama_2837 at 3374.725 kb on - strand, within Sama_2837 at 3374.725 kb on - strand, within Sama_2837 at 3374.725 kb on - strand, within Sama_2837 at 3374.772 kb on + strand, within Sama_2837 at 3374.772 kb on + strand, within Sama_2837 at 3374.773 kb on - strand, within Sama_2837 at 3374.773 kb on - strand, within Sama_2837 at 3374.773 kb on - strand, within Sama_2837 at 3374.818 kb on + strand, within Sama_2837 at 3374.819 kb on - strand, within Sama_2837 at 3374.900 kb on - strand, within Sama_2837 at 3374.959 kb on - strand, within Sama_2837 at 3375.040 kb on - strand, within Sama_2837 at 3375.047 kb on - strand, within Sama_2837 at 3375.047 kb on - strand, within Sama_2837 at 3375.082 kb on + strand, within Sama_2837 at 3375.083 kb on - strand, within Sama_2837 at 3375.091 kb on - strand, within Sama_2837 at 3375.109 kb on - strand, within Sama_2837 at 3375.146 kb on + strand, within Sama_2837 at 3375.147 kb on - strand, within Sama_2837 at 3375.184 kb on + strand, within Sama_2837 at 3375.200 kb on + strand, within Sama_2837 at 3375.201 kb on - strand, within Sama_2837 at 3375.201 kb on - strand, within Sama_2837 at 3375.206 kb on - strand, within Sama_2837 at 3375.262 kb on + strand, within Sama_2837 at 3375.272 kb on + strand at 3375.272 kb on + strand at 3375.272 kb on + strand at 3375.273 kb on - strand at 3375.273 kb on - strand at 3375.323 kb on + strand at 3375.333 kb on + strand at 3375.334 kb on - strand at 3375.344 kb on + strand at 3375.344 kb on + strand at 3375.344 kb on + strand at 3375.344 kb on + strand at 3375.344 kb on + strand at 3375.345 kb on - strand at 3375.345 kb on - strand at 3375.345 kb on - strand at 3375.345 kb on - strand at 3375.345 kb on - strand at 3375.345 kb on - strand at 3375.345 kb on - strand at 3375.491 kb on + strand at 3375.586 kb on - strand at 3375.591 kb on - strand at 3375.612 kb on - strand, within Sama_2838 at 3375.629 kb on + strand, within Sama_2838 at 3375.640 kb on + strand, within Sama_2838 at 3375.640 kb on + strand, within Sama_2838 at 3375.641 kb on - strand, within Sama_2838 at 3375.641 kb on - strand, within Sama_2838 at 3375.650 kb on - strand, within Sama_2838 at 3375.650 kb on - strand, within Sama_2838 at 3375.650 kb on - strand, within Sama_2838 at 3375.737 kb on + strand, within Sama_2838 at 3375.737 kb on + strand, within Sama_2838 at 3375.738 kb on - strand, within Sama_2838 at 3375.738 kb on - strand, within Sama_2838 at 3375.738 kb on - strand, within Sama_2838 at 3375.738 kb on - strand, within Sama_2838 at 3375.765 kb on + strand, within Sama_2838 at 3375.765 kb on + strand, within Sama_2838 at 3375.766 kb on - strand, within Sama_2838 at 3375.802 kb on + strand, within Sama_2838 at 3375.803 kb on - strand, within Sama_2838 at 3375.930 kb on - strand, within Sama_2838 at 3375.993 kb on - strand, within Sama_2838 at 3375.993 kb on - strand, within Sama_2838 at 3376.035 kb on - strand, within Sama_2838 at 3376.078 kb on - strand, within Sama_2838 at 3376.225 kb on + strand, within Sama_2838 at 3376.225 kb on + strand, within Sama_2838 at 3376.225 kb on + strand, within Sama_2838 at 3376.226 kb on - strand, within Sama_2838 at 3376.226 kb on - strand, within Sama_2838 at 3376.226 kb on - strand, within Sama_2838 at 3376.226 kb on - strand, within Sama_2838 at 3376.265 kb on - strand, within Sama_2838 at 3376.265 kb on - strand, within Sama_2838 at 3376.265 kb on - strand, within Sama_2838 at 3376.276 kb on - strand, within Sama_2838 at 3376.361 kb on + strand, within Sama_2838 at 3376.404 kb on - strand, within Sama_2838 at 3376.404 kb on - strand, within Sama_2838 at 3376.503 kb on - strand, within Sama_2838 at 3376.519 kb on + strand, within Sama_2838 at 3376.519 kb on + strand, within Sama_2838 at 3376.519 kb on + strand, within Sama_2838 at 3376.520 kb on - strand, within Sama_2838 at 3376.523 kb on + strand, within Sama_2838 at 3376.523 kb on + strand, within Sama_2838 at 3376.524 kb on - strand, within Sama_2838 at 3376.524 kb on - strand, within Sama_2838 at 3376.524 kb on - strand, within Sama_2838 at 3376.524 kb on - strand, within Sama_2838 at 3376.524 kb on - strand, within Sama_2838 at 3376.524 kb on - strand, within Sama_2838 at 3376.524 kb on - strand, within Sama_2838 at 3376.589 kb on - strand, within Sama_2838 at 3376.699 kb on - strand, within Sama_2838 at 3376.699 kb on - strand, within Sama_2838 at 3376.737 kb on - strand, within Sama_2838 at 3376.825 kb on + strand, within Sama_2838 at 3376.825 kb on + strand, within Sama_2838 at 3376.825 kb on + strand, within Sama_2838 at 3376.825 kb on + strand, within Sama_2838 at 3376.826 kb on - strand, within Sama_2838 at 3376.826 kb on - strand, within Sama_2838 at 3376.826 kb on - strand, within Sama_2838 at 3376.881 kb on - strand, within Sama_2838 at 3376.881 kb on - strand, within Sama_2838 at 3376.881 kb on - strand, within Sama_2838 at 3376.956 kb on + strand, within Sama_2838 at 3376.978 kb on + strand, within Sama_2838 at 3376.979 kb on - strand, within Sama_2838 at 3376.979 kb on - strand, within Sama_2838 at 3376.979 kb on - strand, within Sama_2838 at 3376.979 kb on - strand, within Sama_2838 at 3376.979 kb on - strand, within Sama_2838 at 3376.979 kb on - strand, within Sama_2838 at 3376.979 kb on - strand, within Sama_2838 at 3377.009 kb on + strand at 3377.031 kb on - strand at 3377.043 kb on + strand at 3377.136 kb on - strand at 3377.155 kb on - strand at 3377.173 kb on - strand at 3377.189 kb on + strand at 3377.189 kb on + strand at 3377.202 kb on + strand at 3377.252 kb on + strand at 3377.252 kb on + strand at 3377.252 kb on + strand at 3377.253 kb on - strand at 3377.253 kb on - strand at 3377.253 kb on - strand at 3377.253 kb on - strand at 3377.253 kb on - strand at 3377.253 kb on - strand at 3377.253 kb on - strand at 3377.256 kb on - strand at 3377.256 kb on - strand at 3377.303 kb on - strand at 3377.303 kb on - strand at 3377.303 kb on - strand at 3377.303 kb on - strand at 3377.304 kb on + strand at 3377.304 kb on + strand at 3377.304 kb on + strand at 3377.304 kb on + strand at 3377.304 kb on + strand at 3377.305 kb on - strand at 3377.305 kb on - strand at 3377.305 kb on - strand at 3377.305 kb on - strand at 3377.305 kb on - strand at 3377.374 kb on - strand, within Sama_2839 at 3377.421 kb on - strand, within Sama_2839 at 3377.440 kb on - strand, within Sama_2839 at 3377.440 kb on - strand, within Sama_2839 at 3377.440 kb on - strand, within Sama_2839 at 3377.454 kb on - strand, within Sama_2839 at 3377.454 kb on - strand, within Sama_2839 at 3377.460 kb on + strand, within Sama_2839 at 3377.460 kb on + strand, within Sama_2839 at 3377.461 kb on - strand, within Sama_2839 at 3377.461 kb on - strand, within Sama_2839 at 3377.461 kb on - strand, within Sama_2839 at 3377.461 kb on - strand, within Sama_2839 at 3377.462 kb on + strand, within Sama_2839 at 3377.462 kb on + strand, within Sama_2839 at 3377.463 kb on - strand, within Sama_2839 at 3377.463 kb on - strand, within Sama_2839 at 3377.563 kb on + strand, within Sama_2839 at 3377.563 kb on + strand, within Sama_2839 at 3377.563 kb on + strand, within Sama_2839 at 3377.721 kb on + strand, within Sama_2839 at 3377.741 kb on + strand, within Sama_2839 at 3377.787 kb on + strand, within Sama_2839 at 3377.787 kb on + strand, within Sama_2839 at 3377.788 kb on - strand, within Sama_2839 at 3377.788 kb on - strand, within Sama_2839 at 3377.788 kb on - strand, within Sama_2839 at 3377.977 kb on - strand, within Sama_2839 at 3378.032 kb on - strand, within Sama_2839 at 3378.114 kb on + strand, within Sama_2839 at 3378.141 kb on + strand, within Sama_2839 at 3378.142 kb on - strand, within Sama_2839 at 3378.142 kb on - strand, within Sama_2839 at 3378.142 kb on - strand, within Sama_2839
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 remove 3,374,440 + Sama_2836 0.81 +1.1 3,374,440 + Sama_2836 0.81 +0.7 3,374,441 - Sama_2836 0.81 +0.3 3,374,441 - Sama_2836 0.81 +0.4 3,374,450 + Sama_2836 0.83 +0.9 3,374,451 - Sama_2836 0.83 -0.5 3,374,478 + Sama_2836 0.88 +0.3 3,374,478 + Sama_2836 0.88 +0.7 3,374,478 + Sama_2836 0.88 +0.3 3,374,478 + Sama_2836 0.88 +0.5 3,374,478 + Sama_2836 0.88 -0.3 3,374,478 + Sama_2836 0.88 +0.4 3,374,478 + Sama_2836 0.88 +0.9 3,374,479 - Sama_2836 0.88 -0.9 3,374,479 - Sama_2836 0.88 +0.1 3,374,479 - Sama_2836 0.88 +0.6 3,374,479 - Sama_2836 0.88 +0.7 3,374,613 + -0.5 3,374,613 + -0.9 3,374,614 - +0.5 3,374,614 - +0.6 3,374,614 - +0.5 3,374,720 + Sama_2837 0.15 -1.5 3,374,720 + Sama_2837 0.15 -4.2 3,374,720 + Sama_2837 0.15 -3.6 3,374,721 - Sama_2837 0.15 -2.8 3,374,721 - Sama_2837 0.15 -2.5 3,374,721 - Sama_2837 0.15 -3.0 3,374,724 + Sama_2837 0.15 -1.3 3,374,724 + Sama_2837 0.15 -1.8 3,374,724 + Sama_2837 0.15 -3.6 3,374,724 + Sama_2837 0.15 -2.9 3,374,724 + Sama_2837 0.15 +2.0 3,374,725 - Sama_2837 0.16 -2.8 3,374,725 - Sama_2837 0.16 -0.9 3,374,725 - Sama_2837 0.16 -4.3 3,374,725 - Sama_2837 0.16 -1.8 3,374,725 - Sama_2837 0.16 -1.1 3,374,772 + Sama_2837 0.22 -0.8 3,374,772 + Sama_2837 0.22 -2.1 3,374,773 - Sama_2837 0.22 -3.5 3,374,773 - Sama_2837 0.22 -2.9 3,374,773 - Sama_2837 0.22 -2.9 3,374,818 + Sama_2837 0.28 -3.5 3,374,819 - Sama_2837 0.28 -3.6 3,374,900 - Sama_2837 0.40 -1.5 3,374,959 - Sama_2837 0.48 -2.5 3,375,040 - Sama_2837 0.59 -2.9 3,375,047 - Sama_2837 0.60 -2.1 3,375,047 - Sama_2837 0.60 -3.1 3,375,082 + Sama_2837 0.64 -2.8 3,375,083 - Sama_2837 0.65 -0.5 3,375,091 - Sama_2837 0.66 -2.6 3,375,109 - Sama_2837 0.68 -3.2 3,375,146 + Sama_2837 0.73 -2.5 3,375,147 - Sama_2837 0.73 -3.1 3,375,184 + Sama_2837 0.78 -4.3 3,375,200 + Sama_2837 0.81 -1.3 3,375,201 - Sama_2837 0.81 -3.8 3,375,201 - Sama_2837 0.81 -2.1 3,375,206 - Sama_2837 0.81 -4.1 3,375,262 + Sama_2837 0.89 -4.9 3,375,272 + -1.5 3,375,272 + -2.5 3,375,272 + -2.5 3,375,273 - -1.8 3,375,273 - +0.5 3,375,323 + -2.1 3,375,333 + -0.2 3,375,334 - -1.8 3,375,344 + -3.9 3,375,344 + -3.2 3,375,344 + -2.6 3,375,344 + -3.5 3,375,344 + -2.6 3,375,345 - -0.3 3,375,345 - -0.3 3,375,345 - -2.3 3,375,345 - -2.1 3,375,345 - -0.7 3,375,345 - -2.6 3,375,345 - +0.2 3,375,491 + -1.3 3,375,586 - -3.4 3,375,591 - -1.8 3,375,612 - Sama_2838 0.10 -3.1 3,375,629 + Sama_2838 0.11 -3.6 3,375,640 + Sama_2838 0.12 -4.1 3,375,640 + Sama_2838 0.12 -2.9 3,375,641 - Sama_2838 0.12 -1.8 3,375,641 - Sama_2838 0.12 -1.3 3,375,650 - Sama_2838 0.12 -3.4 3,375,650 - Sama_2838 0.12 -2.8 3,375,650 - Sama_2838 0.12 -4.0 3,375,737 + Sama_2838 0.17 -2.3 3,375,737 + Sama_2838 0.17 +0.1 3,375,738 - Sama_2838 0.17 -2.1 3,375,738 - Sama_2838 0.17 -2.8 3,375,738 - Sama_2838 0.17 -2.9 3,375,738 - Sama_2838 0.17 -3.1 3,375,765 + Sama_2838 0.19 -2.6 3,375,765 + Sama_2838 0.19 -2.3 3,375,766 - Sama_2838 0.19 -4.4 3,375,802 + Sama_2838 0.21 -2.3 3,375,803 - Sama_2838 0.21 -3.6 3,375,930 - Sama_2838 0.29 -2.8 3,375,993 - Sama_2838 0.32 -1.4 3,375,993 - Sama_2838 0.32 -1.3 3,376,035 - Sama_2838 0.35 -2.6 3,376,078 - Sama_2838 0.37 -2.1 3,376,225 + Sama_2838 0.46 -2.3 3,376,225 + Sama_2838 0.46 -0.3 3,376,225 + Sama_2838 0.46 -0.5 3,376,226 - Sama_2838 0.46 -3.1 3,376,226 - Sama_2838 0.46 -0.3 3,376,226 - Sama_2838 0.46 -3.3 3,376,226 - Sama_2838 0.46 -2.5 3,376,265 - Sama_2838 0.48 -1.8 3,376,265 - Sama_2838 0.48 -3.1 3,376,265 - Sama_2838 0.48 -3.4 3,376,276 - Sama_2838 0.49 -2.3 3,376,361 + Sama_2838 0.54 -2.1 3,376,404 - Sama_2838 0.56 -1.8 3,376,404 - Sama_2838 0.56 -2.9 3,376,503 - Sama_2838 0.62 -1.1 3,376,519 + Sama_2838 0.63 -3.9 3,376,519 + Sama_2838 0.63 -1.5 3,376,519 + Sama_2838 0.63 -3.2 3,376,520 - Sama_2838 0.63 -0.1 3,376,523 + Sama_2838 0.63 -2.6 3,376,523 + Sama_2838 0.63 -2.1 3,376,524 - Sama_2838 0.63 -2.8 3,376,524 - Sama_2838 0.63 -5.1 3,376,524 - Sama_2838 0.63 -2.8 3,376,524 - Sama_2838 0.63 -2.6 3,376,524 - Sama_2838 0.63 -2.1 3,376,524 - Sama_2838 0.63 -2.5 3,376,524 - Sama_2838 0.63 +0.5 3,376,589 - Sama_2838 0.67 -4.1 3,376,699 - Sama_2838 0.73 -2.1 3,376,699 - Sama_2838 0.73 -2.3 3,376,737 - Sama_2838 0.76 -2.4 3,376,825 + Sama_2838 0.81 -3.5 3,376,825 + Sama_2838 0.81 -4.1 3,376,825 + Sama_2838 0.81 -3.9 3,376,825 + Sama_2838 0.81 -0.5 3,376,826 - Sama_2838 0.81 -1.5 3,376,826 - Sama_2838 0.81 -3.1 3,376,826 - Sama_2838 0.81 -2.3 3,376,881 - Sama_2838 0.84 -2.8 3,376,881 - Sama_2838 0.84 -1.8 3,376,881 - Sama_2838 0.84 -0.5 3,376,956 + Sama_2838 0.88 -1.1 3,376,978 + Sama_2838 0.90 -3.1 3,376,979 - Sama_2838 0.90 -1.5 3,376,979 - Sama_2838 0.90 -2.3 3,376,979 - Sama_2838 0.90 -2.1 3,376,979 - Sama_2838 0.90 -4.5 3,376,979 - Sama_2838 0.90 -3.7 3,376,979 - Sama_2838 0.90 -2.8 3,376,979 - Sama_2838 0.90 -2.1 3,377,009 + -3.6 3,377,031 - -1.5 3,377,043 + -2.5 3,377,136 - -3.2 3,377,155 - -2.9 3,377,173 - -3.9 3,377,189 + -2.1 3,377,189 + -1.8 3,377,202 + -2.1 3,377,252 + -2.8 3,377,252 + -2.5 3,377,252 + -2.8 3,377,253 - -3.2 3,377,253 - -1.1 3,377,253 - -2.5 3,377,253 - -2.1 3,377,253 - -3.1 3,377,253 - -3.4 3,377,253 - -1.3 3,377,256 - -2.6 3,377,256 - -1.5 3,377,303 - -2.3 3,377,303 - -3.4 3,377,303 - -2.7 3,377,303 - -1.1 3,377,304 + -2.1 3,377,304 + -2.6 3,377,304 + -1.8 3,377,304 + -1.8 3,377,304 + -2.6 3,377,305 - -2.9 3,377,305 - -3.7 3,377,305 - -2.6 3,377,305 - -2.1 3,377,305 - -1.5 3,377,374 - Sama_2839 0.12 -2.9 3,377,421 - Sama_2839 0.15 -0.6 3,377,440 - Sama_2839 0.16 -2.1 3,377,440 - Sama_2839 0.16 -2.6 3,377,440 - Sama_2839 0.16 -2.8 3,377,454 - Sama_2839 0.17 -3.1 3,377,454 - Sama_2839 0.17 -2.3 3,377,460 + Sama_2839 0.17 -2.8 3,377,460 + Sama_2839 0.17 -4.3 3,377,461 - Sama_2839 0.17 -0.5 3,377,461 - Sama_2839 0.17 -3.4 3,377,461 - Sama_2839 0.17 -3.7 3,377,461 - Sama_2839 0.17 -2.6 3,377,462 + Sama_2839 0.17 -3.3 3,377,462 + Sama_2839 0.17 -4.3 3,377,463 - Sama_2839 0.17 -1.6 3,377,463 - Sama_2839 0.17 -4.9 3,377,563 + Sama_2839 0.23 -1.5 3,377,563 + Sama_2839 0.23 -2.2 3,377,563 + Sama_2839 0.23 -4.1 3,377,721 + Sama_2839 0.31 -1.5 3,377,741 + Sama_2839 0.33 -1.5 3,377,787 + Sama_2839 0.35 -2.8 3,377,787 + Sama_2839 0.35 -1.1 3,377,788 - Sama_2839 0.35 -3.0 3,377,788 - Sama_2839 0.35 -3.5 3,377,788 - Sama_2839 0.35 -3.6 3,377,977 - Sama_2839 0.46 -2.6 3,378,032 - Sama_2839 0.49 -2.0 3,378,114 + Sama_2839 0.53 -1.1 3,378,141 + Sama_2839 0.55 -1.1 3,378,142 - Sama_2839 0.55 -2.6 3,378,142 - Sama_2839 0.55 -2.8 3,378,142 - Sama_2839 0.55 -2.5
Or see this region's nucleotide sequence