Strain Fitness in Shewanella amazonensis SB2B around Sama_2838

Experiment: Tween 20

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_2836 and Sama_2837 are separated by 69 nucleotidesSama_2837 and Sama_2838 are separated by 97 nucleotidesSama_2838 and Sama_2839 overlap by 1 nucleotides Sama_2836: Sama_2836 - thiol:disulfide interchange protein, putative (RefSeq), at 3,374,003 to 3,374,542 _2836 Sama_2837: Sama_2837 - phosphoadenosine phosphosulfate reductase (RefSeq), at 3,374,612 to 3,375,340 _2837 Sama_2838: Sama_2838 - sulfite reductase subunit beta (RefSeq), at 3,375,438 to 3,377,153 _2838 Sama_2839: Sama_2839 - sulfite reductase subunit alpha (RefSeq), at 3,377,153 to 3,378,961 _2839 Position (kb) 3375 3376 3377 3378Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3374.440 kb on + strand, within Sama_2836at 3374.440 kb on + strand, within Sama_2836at 3374.441 kb on - strand, within Sama_2836at 3374.441 kb on - strand, within Sama_2836at 3374.450 kb on + strand, within Sama_2836at 3374.451 kb on - strand, within Sama_2836at 3374.478 kb on + strand, within Sama_2836at 3374.478 kb on + strand, within Sama_2836at 3374.478 kb on + strand, within Sama_2836at 3374.478 kb on + strand, within Sama_2836at 3374.478 kb on + strand, within Sama_2836at 3374.478 kb on + strand, within Sama_2836at 3374.478 kb on + strand, within Sama_2836at 3374.479 kb on - strand, within Sama_2836at 3374.479 kb on - strand, within Sama_2836at 3374.479 kb on - strand, within Sama_2836at 3374.479 kb on - strand, within Sama_2836at 3374.613 kb on + strandat 3374.613 kb on + strandat 3374.614 kb on - strandat 3374.614 kb on - strandat 3374.614 kb on - strandat 3374.720 kb on + strand, within Sama_2837at 3374.720 kb on + strand, within Sama_2837at 3374.720 kb on + strand, within Sama_2837at 3374.721 kb on - strand, within Sama_2837at 3374.721 kb on - strand, within Sama_2837at 3374.721 kb on - strand, within Sama_2837at 3374.724 kb on + strand, within Sama_2837at 3374.724 kb on + strand, within Sama_2837at 3374.724 kb on + strand, within Sama_2837at 3374.724 kb on + strand, within Sama_2837at 3374.724 kb on + strand, within Sama_2837at 3374.725 kb on - strand, within Sama_2837at 3374.725 kb on - strand, within Sama_2837at 3374.725 kb on - strand, within Sama_2837at 3374.725 kb on - strand, within Sama_2837at 3374.725 kb on - strand, within Sama_2837at 3374.772 kb on + strand, within Sama_2837at 3374.772 kb on + strand, within Sama_2837at 3374.773 kb on - strand, within Sama_2837at 3374.773 kb on - strand, within Sama_2837at 3374.773 kb on - strand, within Sama_2837at 3374.818 kb on + strand, within Sama_2837at 3374.819 kb on - strand, within Sama_2837at 3374.900 kb on - strand, within Sama_2837at 3374.959 kb on - strand, within Sama_2837at 3375.040 kb on - strand, within Sama_2837at 3375.047 kb on - strand, within Sama_2837at 3375.047 kb on - strand, within Sama_2837at 3375.082 kb on + strand, within Sama_2837at 3375.083 kb on - strand, within Sama_2837at 3375.091 kb on - strand, within Sama_2837at 3375.109 kb on - strand, within Sama_2837at 3375.146 kb on + strand, within Sama_2837at 3375.147 kb on - strand, within Sama_2837at 3375.184 kb on + strand, within Sama_2837at 3375.200 kb on + strand, within Sama_2837at 3375.201 kb on - strand, within Sama_2837at 3375.201 kb on - strand, within Sama_2837at 3375.206 kb on - strand, within Sama_2837at 3375.262 kb on + strand, within Sama_2837at 3375.272 kb on + strandat 3375.272 kb on + strandat 3375.272 kb on + strandat 3375.273 kb on - strandat 3375.273 kb on - strandat 3375.323 kb on + strandat 3375.333 kb on + strandat 3375.334 kb on - strandat 3375.344 kb on + strandat 3375.344 kb on + strandat 3375.344 kb on + strandat 3375.344 kb on + strandat 3375.344 kb on + strandat 3375.345 kb on - strandat 3375.345 kb on - strandat 3375.345 kb on - strandat 3375.345 kb on - strandat 3375.345 kb on - strandat 3375.345 kb on - strandat 3375.345 kb on - strandat 3375.491 kb on + strandat 3375.586 kb on - strandat 3375.591 kb on - strandat 3375.612 kb on - strand, within Sama_2838at 3375.629 kb on + strand, within Sama_2838at 3375.640 kb on + strand, within Sama_2838at 3375.640 kb on + strand, within Sama_2838at 3375.641 kb on - strand, within Sama_2838at 3375.641 kb on - strand, within Sama_2838at 3375.650 kb on - strand, within Sama_2838at 3375.650 kb on - strand, within Sama_2838at 3375.650 kb on - strand, within Sama_2838at 3375.737 kb on + strand, within Sama_2838at 3375.737 kb on + strand, within Sama_2838at 3375.738 kb on - strand, within Sama_2838at 3375.738 kb on - strand, within Sama_2838at 3375.738 kb on - strand, within Sama_2838at 3375.738 kb on - strand, within Sama_2838at 3375.765 kb on + strand, within Sama_2838at 3375.765 kb on + strand, within Sama_2838at 3375.766 kb on - strand, within Sama_2838at 3375.802 kb on + strand, within Sama_2838at 3375.803 kb on - strand, within Sama_2838at 3375.930 kb on - strand, within Sama_2838at 3375.993 kb on - strand, within Sama_2838at 3375.993 kb on - strand, within Sama_2838at 3376.035 kb on - strand, within Sama_2838at 3376.078 kb on - strand, within Sama_2838at 3376.225 kb on + strand, within Sama_2838at 3376.225 kb on + strand, within Sama_2838at 3376.225 kb on + strand, within Sama_2838at 3376.226 kb on - strand, within Sama_2838at 3376.226 kb on - strand, within Sama_2838at 3376.226 kb on - strand, within Sama_2838at 3376.226 kb on - strand, within Sama_2838at 3376.265 kb on - strand, within Sama_2838at 3376.265 kb on - strand, within Sama_2838at 3376.265 kb on - strand, within Sama_2838at 3376.276 kb on - strand, within Sama_2838at 3376.361 kb on + strand, within Sama_2838at 3376.404 kb on - strand, within Sama_2838at 3376.404 kb on - strand, within Sama_2838at 3376.503 kb on - strand, within Sama_2838at 3376.519 kb on + strand, within Sama_2838at 3376.519 kb on + strand, within Sama_2838at 3376.519 kb on + strand, within Sama_2838at 3376.520 kb on - strand, within Sama_2838at 3376.523 kb on + strand, within Sama_2838at 3376.523 kb on + strand, within Sama_2838at 3376.524 kb on - strand, within Sama_2838at 3376.524 kb on - strand, within Sama_2838at 3376.524 kb on - strand, within Sama_2838at 3376.524 kb on - strand, within Sama_2838at 3376.524 kb on - strand, within Sama_2838at 3376.524 kb on - strand, within Sama_2838at 3376.524 kb on - strand, within Sama_2838at 3376.589 kb on - strand, within Sama_2838at 3376.699 kb on - strand, within Sama_2838at 3376.699 kb on - strand, within Sama_2838at 3376.737 kb on - strand, within Sama_2838at 3376.825 kb on + strand, within Sama_2838at 3376.825 kb on + strand, within Sama_2838at 3376.825 kb on + strand, within Sama_2838at 3376.825 kb on + strand, within Sama_2838at 3376.826 kb on - strand, within Sama_2838at 3376.826 kb on - strand, within Sama_2838at 3376.826 kb on - strand, within Sama_2838at 3376.881 kb on - strand, within Sama_2838at 3376.881 kb on - strand, within Sama_2838at 3376.881 kb on - strand, within Sama_2838at 3376.956 kb on + strand, within Sama_2838at 3376.978 kb on + strand, within Sama_2838at 3376.979 kb on - strand, within Sama_2838at 3376.979 kb on - strand, within Sama_2838at 3376.979 kb on - strand, within Sama_2838at 3376.979 kb on - strand, within Sama_2838at 3376.979 kb on - strand, within Sama_2838at 3376.979 kb on - strand, within Sama_2838at 3376.979 kb on - strand, within Sama_2838at 3377.009 kb on + strandat 3377.031 kb on - strandat 3377.043 kb on + strandat 3377.136 kb on - strandat 3377.155 kb on - strandat 3377.173 kb on - strandat 3377.189 kb on + strandat 3377.189 kb on + strandat 3377.202 kb on + strandat 3377.252 kb on + strandat 3377.252 kb on + strandat 3377.252 kb on + strandat 3377.253 kb on - strandat 3377.253 kb on - strandat 3377.253 kb on - strandat 3377.253 kb on - strandat 3377.253 kb on - strandat 3377.253 kb on - strandat 3377.253 kb on - strandat 3377.256 kb on - strandat 3377.256 kb on - strandat 3377.303 kb on - strandat 3377.303 kb on - strandat 3377.303 kb on - strandat 3377.303 kb on - strandat 3377.304 kb on + strandat 3377.304 kb on + strandat 3377.304 kb on + strandat 3377.304 kb on + strandat 3377.304 kb on + strandat 3377.305 kb on - strandat 3377.305 kb on - strandat 3377.305 kb on - strandat 3377.305 kb on - strandat 3377.305 kb on - strandat 3377.374 kb on - strand, within Sama_2839at 3377.421 kb on - strand, within Sama_2839at 3377.440 kb on - strand, within Sama_2839at 3377.440 kb on - strand, within Sama_2839at 3377.440 kb on - strand, within Sama_2839at 3377.454 kb on - strand, within Sama_2839at 3377.454 kb on - strand, within Sama_2839at 3377.460 kb on + strand, within Sama_2839at 3377.460 kb on + strand, within Sama_2839at 3377.461 kb on - strand, within Sama_2839at 3377.461 kb on - strand, within Sama_2839at 3377.461 kb on - strand, within Sama_2839at 3377.461 kb on - strand, within Sama_2839at 3377.462 kb on + strand, within Sama_2839at 3377.462 kb on + strand, within Sama_2839at 3377.463 kb on - strand, within Sama_2839at 3377.463 kb on - strand, within Sama_2839at 3377.563 kb on + strand, within Sama_2839at 3377.563 kb on + strand, within Sama_2839at 3377.563 kb on + strand, within Sama_2839at 3377.721 kb on + strand, within Sama_2839at 3377.741 kb on + strand, within Sama_2839at 3377.787 kb on + strand, within Sama_2839at 3377.787 kb on + strand, within Sama_2839at 3377.788 kb on - strand, within Sama_2839at 3377.788 kb on - strand, within Sama_2839at 3377.788 kb on - strand, within Sama_2839at 3377.977 kb on - strand, within Sama_2839at 3378.032 kb on - strand, within Sama_2839at 3378.114 kb on + strand, within Sama_2839at 3378.141 kb on + strand, within Sama_2839at 3378.142 kb on - strand, within Sama_2839at 3378.142 kb on - strand, within Sama_2839at 3378.142 kb on - strand, within Sama_2839

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20
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3,374,440 + Sama_2836 0.81 +1.1
3,374,440 + Sama_2836 0.81 +0.7
3,374,441 - Sama_2836 0.81 +0.3
3,374,441 - Sama_2836 0.81 +0.4
3,374,450 + Sama_2836 0.83 +0.9
3,374,451 - Sama_2836 0.83 -0.5
3,374,478 + Sama_2836 0.88 +0.3
3,374,478 + Sama_2836 0.88 +0.7
3,374,478 + Sama_2836 0.88 +0.3
3,374,478 + Sama_2836 0.88 +0.5
3,374,478 + Sama_2836 0.88 -0.3
3,374,478 + Sama_2836 0.88 +0.4
3,374,478 + Sama_2836 0.88 +0.9
3,374,479 - Sama_2836 0.88 -0.9
3,374,479 - Sama_2836 0.88 +0.1
3,374,479 - Sama_2836 0.88 +0.6
3,374,479 - Sama_2836 0.88 +0.7
3,374,613 + -0.5
3,374,613 + -0.9
3,374,614 - +0.5
3,374,614 - +0.6
3,374,614 - +0.5
3,374,720 + Sama_2837 0.15 -1.5
3,374,720 + Sama_2837 0.15 -4.2
3,374,720 + Sama_2837 0.15 -3.6
3,374,721 - Sama_2837 0.15 -2.8
3,374,721 - Sama_2837 0.15 -2.5
3,374,721 - Sama_2837 0.15 -3.0
3,374,724 + Sama_2837 0.15 -1.3
3,374,724 + Sama_2837 0.15 -1.8
3,374,724 + Sama_2837 0.15 -3.6
3,374,724 + Sama_2837 0.15 -2.9
3,374,724 + Sama_2837 0.15 +2.0
3,374,725 - Sama_2837 0.16 -2.8
3,374,725 - Sama_2837 0.16 -0.9
3,374,725 - Sama_2837 0.16 -4.3
3,374,725 - Sama_2837 0.16 -1.8
3,374,725 - Sama_2837 0.16 -1.1
3,374,772 + Sama_2837 0.22 -0.8
3,374,772 + Sama_2837 0.22 -2.1
3,374,773 - Sama_2837 0.22 -3.5
3,374,773 - Sama_2837 0.22 -2.9
3,374,773 - Sama_2837 0.22 -2.9
3,374,818 + Sama_2837 0.28 -3.5
3,374,819 - Sama_2837 0.28 -3.6
3,374,900 - Sama_2837 0.40 -1.5
3,374,959 - Sama_2837 0.48 -2.5
3,375,040 - Sama_2837 0.59 -2.9
3,375,047 - Sama_2837 0.60 -2.1
3,375,047 - Sama_2837 0.60 -3.1
3,375,082 + Sama_2837 0.64 -2.8
3,375,083 - Sama_2837 0.65 -0.5
3,375,091 - Sama_2837 0.66 -2.6
3,375,109 - Sama_2837 0.68 -3.2
3,375,146 + Sama_2837 0.73 -2.5
3,375,147 - Sama_2837 0.73 -3.1
3,375,184 + Sama_2837 0.78 -4.3
3,375,200 + Sama_2837 0.81 -1.3
3,375,201 - Sama_2837 0.81 -3.8
3,375,201 - Sama_2837 0.81 -2.1
3,375,206 - Sama_2837 0.81 -4.1
3,375,262 + Sama_2837 0.89 -4.9
3,375,272 + -1.5
3,375,272 + -2.5
3,375,272 + -2.5
3,375,273 - -1.8
3,375,273 - +0.5
3,375,323 + -2.1
3,375,333 + -0.2
3,375,334 - -1.8
3,375,344 + -3.9
3,375,344 + -3.2
3,375,344 + -2.6
3,375,344 + -3.5
3,375,344 + -2.6
3,375,345 - -0.3
3,375,345 - -0.3
3,375,345 - -2.3
3,375,345 - -2.1
3,375,345 - -0.7
3,375,345 - -2.6
3,375,345 - +0.2
3,375,491 + -1.3
3,375,586 - -3.4
3,375,591 - -1.8
3,375,612 - Sama_2838 0.10 -3.1
3,375,629 + Sama_2838 0.11 -3.6
3,375,640 + Sama_2838 0.12 -4.1
3,375,640 + Sama_2838 0.12 -2.9
3,375,641 - Sama_2838 0.12 -1.8
3,375,641 - Sama_2838 0.12 -1.3
3,375,650 - Sama_2838 0.12 -3.4
3,375,650 - Sama_2838 0.12 -2.8
3,375,650 - Sama_2838 0.12 -4.0
3,375,737 + Sama_2838 0.17 -2.3
3,375,737 + Sama_2838 0.17 +0.1
3,375,738 - Sama_2838 0.17 -2.1
3,375,738 - Sama_2838 0.17 -2.8
3,375,738 - Sama_2838 0.17 -2.9
3,375,738 - Sama_2838 0.17 -3.1
3,375,765 + Sama_2838 0.19 -2.6
3,375,765 + Sama_2838 0.19 -2.3
3,375,766 - Sama_2838 0.19 -4.4
3,375,802 + Sama_2838 0.21 -2.3
3,375,803 - Sama_2838 0.21 -3.6
3,375,930 - Sama_2838 0.29 -2.8
3,375,993 - Sama_2838 0.32 -1.4
3,375,993 - Sama_2838 0.32 -1.3
3,376,035 - Sama_2838 0.35 -2.6
3,376,078 - Sama_2838 0.37 -2.1
3,376,225 + Sama_2838 0.46 -2.3
3,376,225 + Sama_2838 0.46 -0.3
3,376,225 + Sama_2838 0.46 -0.5
3,376,226 - Sama_2838 0.46 -3.1
3,376,226 - Sama_2838 0.46 -0.3
3,376,226 - Sama_2838 0.46 -3.3
3,376,226 - Sama_2838 0.46 -2.5
3,376,265 - Sama_2838 0.48 -1.8
3,376,265 - Sama_2838 0.48 -3.1
3,376,265 - Sama_2838 0.48 -3.4
3,376,276 - Sama_2838 0.49 -2.3
3,376,361 + Sama_2838 0.54 -2.1
3,376,404 - Sama_2838 0.56 -1.8
3,376,404 - Sama_2838 0.56 -2.9
3,376,503 - Sama_2838 0.62 -1.1
3,376,519 + Sama_2838 0.63 -3.9
3,376,519 + Sama_2838 0.63 -1.5
3,376,519 + Sama_2838 0.63 -3.2
3,376,520 - Sama_2838 0.63 -0.1
3,376,523 + Sama_2838 0.63 -2.6
3,376,523 + Sama_2838 0.63 -2.1
3,376,524 - Sama_2838 0.63 -2.8
3,376,524 - Sama_2838 0.63 -5.1
3,376,524 - Sama_2838 0.63 -2.8
3,376,524 - Sama_2838 0.63 -2.6
3,376,524 - Sama_2838 0.63 -2.1
3,376,524 - Sama_2838 0.63 -2.5
3,376,524 - Sama_2838 0.63 +0.5
3,376,589 - Sama_2838 0.67 -4.1
3,376,699 - Sama_2838 0.73 -2.1
3,376,699 - Sama_2838 0.73 -2.3
3,376,737 - Sama_2838 0.76 -2.4
3,376,825 + Sama_2838 0.81 -3.5
3,376,825 + Sama_2838 0.81 -4.1
3,376,825 + Sama_2838 0.81 -3.9
3,376,825 + Sama_2838 0.81 -0.5
3,376,826 - Sama_2838 0.81 -1.5
3,376,826 - Sama_2838 0.81 -3.1
3,376,826 - Sama_2838 0.81 -2.3
3,376,881 - Sama_2838 0.84 -2.8
3,376,881 - Sama_2838 0.84 -1.8
3,376,881 - Sama_2838 0.84 -0.5
3,376,956 + Sama_2838 0.88 -1.1
3,376,978 + Sama_2838 0.90 -3.1
3,376,979 - Sama_2838 0.90 -1.5
3,376,979 - Sama_2838 0.90 -2.3
3,376,979 - Sama_2838 0.90 -2.1
3,376,979 - Sama_2838 0.90 -4.5
3,376,979 - Sama_2838 0.90 -3.7
3,376,979 - Sama_2838 0.90 -2.8
3,376,979 - Sama_2838 0.90 -2.1
3,377,009 + -3.6
3,377,031 - -1.5
3,377,043 + -2.5
3,377,136 - -3.2
3,377,155 - -2.9
3,377,173 - -3.9
3,377,189 + -2.1
3,377,189 + -1.8
3,377,202 + -2.1
3,377,252 + -2.8
3,377,252 + -2.5
3,377,252 + -2.8
3,377,253 - -3.2
3,377,253 - -1.1
3,377,253 - -2.5
3,377,253 - -2.1
3,377,253 - -3.1
3,377,253 - -3.4
3,377,253 - -1.3
3,377,256 - -2.6
3,377,256 - -1.5
3,377,303 - -2.3
3,377,303 - -3.4
3,377,303 - -2.7
3,377,303 - -1.1
3,377,304 + -2.1
3,377,304 + -2.6
3,377,304 + -1.8
3,377,304 + -1.8
3,377,304 + -2.6
3,377,305 - -2.9
3,377,305 - -3.7
3,377,305 - -2.6
3,377,305 - -2.1
3,377,305 - -1.5
3,377,374 - Sama_2839 0.12 -2.9
3,377,421 - Sama_2839 0.15 -0.6
3,377,440 - Sama_2839 0.16 -2.1
3,377,440 - Sama_2839 0.16 -2.6
3,377,440 - Sama_2839 0.16 -2.8
3,377,454 - Sama_2839 0.17 -3.1
3,377,454 - Sama_2839 0.17 -2.3
3,377,460 + Sama_2839 0.17 -2.8
3,377,460 + Sama_2839 0.17 -4.3
3,377,461 - Sama_2839 0.17 -0.5
3,377,461 - Sama_2839 0.17 -3.4
3,377,461 - Sama_2839 0.17 -3.7
3,377,461 - Sama_2839 0.17 -2.6
3,377,462 + Sama_2839 0.17 -3.3
3,377,462 + Sama_2839 0.17 -4.3
3,377,463 - Sama_2839 0.17 -1.6
3,377,463 - Sama_2839 0.17 -4.9
3,377,563 + Sama_2839 0.23 -1.5
3,377,563 + Sama_2839 0.23 -2.2
3,377,563 + Sama_2839 0.23 -4.1
3,377,721 + Sama_2839 0.31 -1.5
3,377,741 + Sama_2839 0.33 -1.5
3,377,787 + Sama_2839 0.35 -2.8
3,377,787 + Sama_2839 0.35 -1.1
3,377,788 - Sama_2839 0.35 -3.0
3,377,788 - Sama_2839 0.35 -3.5
3,377,788 - Sama_2839 0.35 -3.6
3,377,977 - Sama_2839 0.46 -2.6
3,378,032 - Sama_2839 0.49 -2.0
3,378,114 + Sama_2839 0.53 -1.1
3,378,141 + Sama_2839 0.55 -1.1
3,378,142 - Sama_2839 0.55 -2.6
3,378,142 - Sama_2839 0.55 -2.8
3,378,142 - Sama_2839 0.55 -2.5

Or see this region's nucleotide sequence