Experiment: Tween 20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_2248 and Sama_2249 are separated by 9 nucleotides Sama_2249 and Sama_2250 overlap by 4 nucleotides Sama_2250 and Sama_2251 overlap by 4 nucleotides Sama_2251 and Sama_2252 are separated by 0 nucleotides
Sama_2248: Sama_2248 - hypothetical protein (RefSeq), at 2,712,197 to 2,712,874
_2248
Sama_2249: Sama_2249 - hypothetical protein (RefSeq), at 2,712,884 to 2,713,807
_2249
Sama_2250: Sama_2250 - acetoacetyl-CoA reductase (RefSeq), at 2,713,804 to 2,714,535
_2250
Sama_2251: Sama_2251 - UDP-3-O-(3-hydroxymyristoyl)-like protein (RefSeq), at 2,714,532 to 2,715,392
_2251
Sama_2252: Sama_2252 - hypothetical protein (RefSeq), at 2,715,393 to 2,716,022
_2252
Position (kb)
2713
2714
2715 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2713.217 kb on - strand, within Sama_2249 at 2713.317 kb on - strand, within Sama_2249 at 2713.322 kb on - strand, within Sama_2249 at 2713.410 kb on + strand, within Sama_2249 at 2713.415 kb on - strand, within Sama_2249 at 2713.529 kb on + strand, within Sama_2249 at 2713.530 kb on - strand, within Sama_2249 at 2713.553 kb on - strand, within Sama_2249 at 2713.592 kb on - strand, within Sama_2249 at 2713.592 kb on - strand, within Sama_2249 at 2713.608 kb on - strand, within Sama_2249 at 2713.608 kb on - strand, within Sama_2249 at 2713.664 kb on + strand, within Sama_2249 at 2713.665 kb on - strand, within Sama_2249 at 2713.854 kb on - strand at 2713.990 kb on - strand, within Sama_2250 at 2713.990 kb on - strand, within Sama_2250 at 2714.056 kb on - strand, within Sama_2250 at 2714.113 kb on - strand, within Sama_2250 at 2714.113 kb on - strand, within Sama_2250 at 2714.134 kb on - strand, within Sama_2250 at 2714.137 kb on - strand, within Sama_2250 at 2714.368 kb on - strand, within Sama_2250 at 2714.472 kb on - strand at 2714.516 kb on - strand at 2714.590 kb on - strand at 2714.628 kb on - strand, within Sama_2251 at 2714.638 kb on - strand, within Sama_2251 at 2714.692 kb on - strand, within Sama_2251 at 2714.694 kb on - strand, within Sama_2251 at 2714.710 kb on - strand, within Sama_2251 at 2714.728 kb on - strand, within Sama_2251 at 2714.742 kb on - strand, within Sama_2251 at 2714.751 kb on - strand, within Sama_2251 at 2714.770 kb on - strand, within Sama_2251 at 2714.770 kb on - strand, within Sama_2251 at 2714.898 kb on - strand, within Sama_2251 at 2714.898 kb on - strand, within Sama_2251 at 2714.901 kb on - strand, within Sama_2251 at 2714.901 kb on - strand, within Sama_2251 at 2714.980 kb on - strand, within Sama_2251 at 2715.369 kb on - strand at 2715.445 kb on - strand at 2715.450 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 remove 2,713,217 - Sama_2249 0.36 +0.4 2,713,317 - Sama_2249 0.47 -0.0 2,713,322 - Sama_2249 0.47 +1.5 2,713,410 + Sama_2249 0.57 +2.2 2,713,415 - Sama_2249 0.57 -0.0 2,713,529 + Sama_2249 0.70 -0.5 2,713,530 - Sama_2249 0.70 +0.6 2,713,553 - Sama_2249 0.72 -1.2 2,713,592 - Sama_2249 0.77 -0.2 2,713,592 - Sama_2249 0.77 +0.1 2,713,608 - Sama_2249 0.78 -2.5 2,713,608 - Sama_2249 0.78 +2.0 2,713,664 + Sama_2249 0.84 +2.5 2,713,665 - Sama_2249 0.85 +1.0 2,713,854 - +0.5 2,713,990 - Sama_2250 0.25 +0.5 2,713,990 - Sama_2250 0.25 +1.4 2,714,056 - Sama_2250 0.34 +0.9 2,714,113 - Sama_2250 0.42 -0.3 2,714,113 - Sama_2250 0.42 +0.6 2,714,134 - Sama_2250 0.45 +0.8 2,714,137 - Sama_2250 0.45 -0.6 2,714,368 - Sama_2250 0.77 +1.6 2,714,472 - +1.2 2,714,516 - +0.9 2,714,590 - -1.4 2,714,628 - Sama_2251 0.11 -1.9 2,714,638 - Sama_2251 0.12 -1.6 2,714,692 - Sama_2251 0.19 -1.6 2,714,694 - Sama_2251 0.19 -0.2 2,714,710 - Sama_2251 0.21 +0.4 2,714,728 - Sama_2251 0.23 +0.4 2,714,742 - Sama_2251 0.24 -0.4 2,714,751 - Sama_2251 0.25 -1.0 2,714,770 - Sama_2251 0.28 -0.6 2,714,770 - Sama_2251 0.28 -0.5 2,714,898 - Sama_2251 0.43 -0.8 2,714,898 - Sama_2251 0.43 -1.6 2,714,901 - Sama_2251 0.43 +0.1 2,714,901 - Sama_2251 0.43 -0.0 2,714,980 - Sama_2251 0.52 -2.1 2,715,369 - -0.6 2,715,445 - +1.4 2,715,450 - +0.4
Or see this region's nucleotide sequence