Strain Fitness in Shewanella amazonensis SB2B around Sama_2250

Experiment: Tween 20

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_2248 and Sama_2249 are separated by 9 nucleotidesSama_2249 and Sama_2250 overlap by 4 nucleotidesSama_2250 and Sama_2251 overlap by 4 nucleotidesSama_2251 and Sama_2252 are separated by 0 nucleotides Sama_2248: Sama_2248 - hypothetical protein (RefSeq), at 2,712,197 to 2,712,874 _2248 Sama_2249: Sama_2249 - hypothetical protein (RefSeq), at 2,712,884 to 2,713,807 _2249 Sama_2250: Sama_2250 - acetoacetyl-CoA reductase (RefSeq), at 2,713,804 to 2,714,535 _2250 Sama_2251: Sama_2251 - UDP-3-O-(3-hydroxymyristoyl)-like protein (RefSeq), at 2,714,532 to 2,715,392 _2251 Sama_2252: Sama_2252 - hypothetical protein (RefSeq), at 2,715,393 to 2,716,022 _2252 Position (kb) 2713 2714 2715Strain fitness (log2 ratio) -2 -1 0 1 2at 2713.217 kb on - strand, within Sama_2249at 2713.317 kb on - strand, within Sama_2249at 2713.322 kb on - strand, within Sama_2249at 2713.410 kb on + strand, within Sama_2249at 2713.415 kb on - strand, within Sama_2249at 2713.529 kb on + strand, within Sama_2249at 2713.530 kb on - strand, within Sama_2249at 2713.553 kb on - strand, within Sama_2249at 2713.592 kb on - strand, within Sama_2249at 2713.592 kb on - strand, within Sama_2249at 2713.608 kb on - strand, within Sama_2249at 2713.608 kb on - strand, within Sama_2249at 2713.664 kb on + strand, within Sama_2249at 2713.665 kb on - strand, within Sama_2249at 2713.854 kb on - strandat 2713.990 kb on - strand, within Sama_2250at 2713.990 kb on - strand, within Sama_2250at 2714.056 kb on - strand, within Sama_2250at 2714.113 kb on - strand, within Sama_2250at 2714.113 kb on - strand, within Sama_2250at 2714.134 kb on - strand, within Sama_2250at 2714.137 kb on - strand, within Sama_2250at 2714.368 kb on - strand, within Sama_2250at 2714.472 kb on - strandat 2714.516 kb on - strandat 2714.590 kb on - strandat 2714.628 kb on - strand, within Sama_2251at 2714.638 kb on - strand, within Sama_2251at 2714.692 kb on - strand, within Sama_2251at 2714.694 kb on - strand, within Sama_2251at 2714.710 kb on - strand, within Sama_2251at 2714.728 kb on - strand, within Sama_2251at 2714.742 kb on - strand, within Sama_2251at 2714.751 kb on - strand, within Sama_2251at 2714.770 kb on - strand, within Sama_2251at 2714.770 kb on - strand, within Sama_2251at 2714.898 kb on - strand, within Sama_2251at 2714.898 kb on - strand, within Sama_2251at 2714.901 kb on - strand, within Sama_2251at 2714.901 kb on - strand, within Sama_2251at 2714.980 kb on - strand, within Sama_2251at 2715.369 kb on - strandat 2715.445 kb on - strandat 2715.450 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20
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2,713,217 - Sama_2249 0.36 +0.4
2,713,317 - Sama_2249 0.47 -0.0
2,713,322 - Sama_2249 0.47 +1.5
2,713,410 + Sama_2249 0.57 +2.2
2,713,415 - Sama_2249 0.57 -0.0
2,713,529 + Sama_2249 0.70 -0.5
2,713,530 - Sama_2249 0.70 +0.6
2,713,553 - Sama_2249 0.72 -1.2
2,713,592 - Sama_2249 0.77 -0.2
2,713,592 - Sama_2249 0.77 +0.1
2,713,608 - Sama_2249 0.78 -2.5
2,713,608 - Sama_2249 0.78 +2.0
2,713,664 + Sama_2249 0.84 +2.5
2,713,665 - Sama_2249 0.85 +1.0
2,713,854 - +0.5
2,713,990 - Sama_2250 0.25 +0.5
2,713,990 - Sama_2250 0.25 +1.4
2,714,056 - Sama_2250 0.34 +0.9
2,714,113 - Sama_2250 0.42 -0.3
2,714,113 - Sama_2250 0.42 +0.6
2,714,134 - Sama_2250 0.45 +0.8
2,714,137 - Sama_2250 0.45 -0.6
2,714,368 - Sama_2250 0.77 +1.6
2,714,472 - +1.2
2,714,516 - +0.9
2,714,590 - -1.4
2,714,628 - Sama_2251 0.11 -1.9
2,714,638 - Sama_2251 0.12 -1.6
2,714,692 - Sama_2251 0.19 -1.6
2,714,694 - Sama_2251 0.19 -0.2
2,714,710 - Sama_2251 0.21 +0.4
2,714,728 - Sama_2251 0.23 +0.4
2,714,742 - Sama_2251 0.24 -0.4
2,714,751 - Sama_2251 0.25 -1.0
2,714,770 - Sama_2251 0.28 -0.6
2,714,770 - Sama_2251 0.28 -0.5
2,714,898 - Sama_2251 0.43 -0.8
2,714,898 - Sama_2251 0.43 -1.6
2,714,901 - Sama_2251 0.43 +0.1
2,714,901 - Sama_2251 0.43 -0.0
2,714,980 - Sama_2251 0.52 -2.1
2,715,369 - -0.6
2,715,445 - +1.4
2,715,450 - +0.4

Or see this region's nucleotide sequence