Experiment: Tween 20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_2153 and Sama_2154 are separated by 120 nucleotides Sama_2154 and Sama_2155 are separated by 103 nucleotides
Sama_2153: Sama_2153 - erythronate-4-phosphate dehydrogenase (RefSeq), at 2,601,632 to 2,602,759
_2153
Sama_2154: Sama_2154 - 3-oxoacyl-(acyl-carrier-protein) synthase I (RefSeq), at 2,602,880 to 2,604,091
_2154
Sama_2155: Sama_2155 - glycine/D-amino acid oxidase (deaminating)-like protein (RefSeq), at 2,604,195 to 2,606,009
_2155
Position (kb)
2602
2603
2604
2605 Strain fitness (log2 ratio)
-1
0
1
2 at 2602.800 kb on - strand at 2602.810 kb on - strand at 2602.892 kb on - strand at 2602.892 kb on - strand at 2603.467 kb on - strand, within Sama_2154 at 2604.111 kb on - strand at 2604.120 kb on - strand at 2604.140 kb on - strand at 2604.143 kb on - strand at 2604.161 kb on - strand at 2604.161 kb on - strand at 2604.161 kb on - strand at 2604.161 kb on - strand at 2604.161 kb on - strand at 2604.179 kb on - strand at 2604.194 kb on - strand at 2604.397 kb on - strand, within Sama_2155 at 2604.397 kb on - strand, within Sama_2155 at 2604.424 kb on + strand, within Sama_2155 at 2604.424 kb on + strand, within Sama_2155 at 2604.425 kb on - strand, within Sama_2155 at 2604.425 kb on - strand, within Sama_2155 at 2604.431 kb on + strand, within Sama_2155 at 2604.431 kb on + strand, within Sama_2155 at 2604.432 kb on - strand, within Sama_2155 at 2604.432 kb on - strand, within Sama_2155 at 2604.448 kb on + strand, within Sama_2155 at 2604.449 kb on - strand, within Sama_2155 at 2604.548 kb on + strand, within Sama_2155 at 2604.598 kb on - strand, within Sama_2155 at 2604.598 kb on - strand, within Sama_2155 at 2604.792 kb on - strand, within Sama_2155 at 2604.871 kb on - strand, within Sama_2155 at 2604.927 kb on + strand, within Sama_2155 at 2604.928 kb on - strand, within Sama_2155 at 2604.928 kb on - strand, within Sama_2155 at 2604.988 kb on - strand, within Sama_2155 at 2604.992 kb on + strand, within Sama_2155
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 remove 2,602,800 - -0.7 2,602,810 - +1.0 2,602,892 - +0.9 2,602,892 - +1.3 2,603,467 - Sama_2154 0.48 +0.6 2,604,111 - +0.1 2,604,120 - +1.1 2,604,140 - -0.3 2,604,143 - -0.1 2,604,161 - +0.9 2,604,161 - +0.9 2,604,161 - -1.5 2,604,161 - +1.3 2,604,161 - +0.3 2,604,179 - +0.4 2,604,194 - -0.6 2,604,397 - Sama_2155 0.11 -0.5 2,604,397 - Sama_2155 0.11 +1.9 2,604,424 + Sama_2155 0.13 +1.0 2,604,424 + Sama_2155 0.13 -0.1 2,604,425 - Sama_2155 0.13 -0.8 2,604,425 - Sama_2155 0.13 +0.6 2,604,431 + Sama_2155 0.13 -0.4 2,604,431 + Sama_2155 0.13 -1.1 2,604,432 - Sama_2155 0.13 +0.7 2,604,432 - Sama_2155 0.13 -0.1 2,604,448 + Sama_2155 0.14 -0.4 2,604,449 - Sama_2155 0.14 -0.4 2,604,548 + Sama_2155 0.19 -0.3 2,604,598 - Sama_2155 0.22 +0.0 2,604,598 - Sama_2155 0.22 +0.4 2,604,792 - Sama_2155 0.33 +1.7 2,604,871 - Sama_2155 0.37 +0.6 2,604,927 + Sama_2155 0.40 -0.4 2,604,928 - Sama_2155 0.40 -0.6 2,604,928 - Sama_2155 0.40 +0.1 2,604,988 - Sama_2155 0.44 +0.1 2,604,992 + Sama_2155 0.44 -0.5
Or see this region's nucleotide sequence