Strain Fitness in Shewanella amazonensis SB2B around Sama_2154

Experiment: Tween 20

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_2153 and Sama_2154 are separated by 120 nucleotidesSama_2154 and Sama_2155 are separated by 103 nucleotides Sama_2153: Sama_2153 - erythronate-4-phosphate dehydrogenase (RefSeq), at 2,601,632 to 2,602,759 _2153 Sama_2154: Sama_2154 - 3-oxoacyl-(acyl-carrier-protein) synthase I (RefSeq), at 2,602,880 to 2,604,091 _2154 Sama_2155: Sama_2155 - glycine/D-amino acid oxidase (deaminating)-like protein (RefSeq), at 2,604,195 to 2,606,009 _2155 Position (kb) 2602 2603 2604 2605Strain fitness (log2 ratio) -1 0 1 2at 2602.800 kb on - strandat 2602.810 kb on - strandat 2602.892 kb on - strandat 2602.892 kb on - strandat 2603.467 kb on - strand, within Sama_2154at 2604.111 kb on - strandat 2604.120 kb on - strandat 2604.140 kb on - strandat 2604.143 kb on - strandat 2604.161 kb on - strandat 2604.161 kb on - strandat 2604.161 kb on - strandat 2604.161 kb on - strandat 2604.161 kb on - strandat 2604.179 kb on - strandat 2604.194 kb on - strandat 2604.397 kb on - strand, within Sama_2155at 2604.397 kb on - strand, within Sama_2155at 2604.424 kb on + strand, within Sama_2155at 2604.424 kb on + strand, within Sama_2155at 2604.425 kb on - strand, within Sama_2155at 2604.425 kb on - strand, within Sama_2155at 2604.431 kb on + strand, within Sama_2155at 2604.431 kb on + strand, within Sama_2155at 2604.432 kb on - strand, within Sama_2155at 2604.432 kb on - strand, within Sama_2155at 2604.448 kb on + strand, within Sama_2155at 2604.449 kb on - strand, within Sama_2155at 2604.548 kb on + strand, within Sama_2155at 2604.598 kb on - strand, within Sama_2155at 2604.598 kb on - strand, within Sama_2155at 2604.792 kb on - strand, within Sama_2155at 2604.871 kb on - strand, within Sama_2155at 2604.927 kb on + strand, within Sama_2155at 2604.928 kb on - strand, within Sama_2155at 2604.928 kb on - strand, within Sama_2155at 2604.988 kb on - strand, within Sama_2155at 2604.992 kb on + strand, within Sama_2155

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20
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2,602,800 - -0.7
2,602,810 - +1.0
2,602,892 - +0.9
2,602,892 - +1.3
2,603,467 - Sama_2154 0.48 +0.6
2,604,111 - +0.1
2,604,120 - +1.1
2,604,140 - -0.3
2,604,143 - -0.1
2,604,161 - +0.9
2,604,161 - +0.9
2,604,161 - -1.5
2,604,161 - +1.3
2,604,161 - +0.3
2,604,179 - +0.4
2,604,194 - -0.6
2,604,397 - Sama_2155 0.11 -0.5
2,604,397 - Sama_2155 0.11 +1.9
2,604,424 + Sama_2155 0.13 +1.0
2,604,424 + Sama_2155 0.13 -0.1
2,604,425 - Sama_2155 0.13 -0.8
2,604,425 - Sama_2155 0.13 +0.6
2,604,431 + Sama_2155 0.13 -0.4
2,604,431 + Sama_2155 0.13 -1.1
2,604,432 - Sama_2155 0.13 +0.7
2,604,432 - Sama_2155 0.13 -0.1
2,604,448 + Sama_2155 0.14 -0.4
2,604,449 - Sama_2155 0.14 -0.4
2,604,548 + Sama_2155 0.19 -0.3
2,604,598 - Sama_2155 0.22 +0.0
2,604,598 - Sama_2155 0.22 +0.4
2,604,792 - Sama_2155 0.33 +1.7
2,604,871 - Sama_2155 0.37 +0.6
2,604,927 + Sama_2155 0.40 -0.4
2,604,928 - Sama_2155 0.40 -0.6
2,604,928 - Sama_2155 0.40 +0.1
2,604,988 - Sama_2155 0.44 +0.1
2,604,992 + Sama_2155 0.44 -0.5

Or see this region's nucleotide sequence