Experiment: Tween 20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1804 and Sama_1805 are separated by 72 nucleotides Sama_1805 and Sama_R0068 are separated by 183 nucleotides Sama_R0068 and Sama_R0069 are separated by 20 nucleotides Sama_R0069 and Sama_1806 are separated by 156 nucleotides
Sama_1804: Sama_1804 - hypothetical protein (RefSeq), at 2,195,616 to 2,196,524
_1804
Sama_1805: Sama_1805 - aromatic amino acid aminotransferase (RefSeq), at 2,196,597 to 2,197,790
_1805
Sama_R0068: Sama_R0068 - tRNA-Cys (RefSeq), at 2,197,974 to 2,198,047
_R0068
Sama_R0069: Sama_R0069 - tRNA-Gly (RefSeq), at 2,198,068 to 2,198,143
_R0069
Sama_1806: Sama_1806 - glyceraldehyde-3-phosphate dehydrogenase (RefSeq), at 2,198,300 to 2,199,739
_1806
Position (kb)
2196
2197
2198 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2195.623 kb on + strand at 2195.623 kb on + strand at 2195.993 kb on + strand, within Sama_1804 at 2195.993 kb on + strand, within Sama_1804 at 2195.999 kb on + strand, within Sama_1804 at 2196.020 kb on + strand, within Sama_1804 at 2196.020 kb on + strand, within Sama_1804 at 2196.053 kb on + strand, within Sama_1804 at 2196.316 kb on + strand, within Sama_1804 at 2196.316 kb on + strand, within Sama_1804 at 2196.352 kb on + strand, within Sama_1804 at 2196.352 kb on + strand, within Sama_1804 at 2196.359 kb on + strand, within Sama_1804 at 2196.464 kb on + strand at 2196.543 kb on + strand at 2196.664 kb on - strand at 2196.685 kb on + strand at 2196.686 kb on - strand at 2196.786 kb on + strand, within Sama_1805 at 2196.787 kb on - strand, within Sama_1805 at 2196.821 kb on + strand, within Sama_1805 at 2196.836 kb on + strand, within Sama_1805 at 2197.037 kb on - strand, within Sama_1805 at 2197.126 kb on - strand, within Sama_1805 at 2197.126 kb on - strand, within Sama_1805 at 2197.148 kb on - strand, within Sama_1805 at 2197.257 kb on + strand, within Sama_1805 at 2197.339 kb on + strand, within Sama_1805 at 2197.339 kb on + strand, within Sama_1805 at 2197.340 kb on - strand, within Sama_1805 at 2197.340 kb on - strand, within Sama_1805 at 2197.340 kb on - strand, within Sama_1805 at 2197.340 kb on - strand, within Sama_1805 at 2197.343 kb on - strand, within Sama_1805 at 2197.343 kb on - strand, within Sama_1805 at 2197.349 kb on - strand, within Sama_1805 at 2197.565 kb on + strand, within Sama_1805 at 2197.566 kb on - strand, within Sama_1805 at 2197.566 kb on - strand, within Sama_1805 at 2197.567 kb on + strand, within Sama_1805 at 2197.567 kb on + strand, within Sama_1805 at 2197.568 kb on - strand, within Sama_1805 at 2197.568 kb on - strand, within Sama_1805 at 2197.594 kb on + strand, within Sama_1805 at 2197.654 kb on - strand, within Sama_1805 at 2197.680 kb on - strand at 2197.680 kb on - strand at 2197.682 kb on - strand at 2197.682 kb on - strand at 2197.707 kb on - strand at 2197.786 kb on - strand at 2197.786 kb on - strand at 2197.786 kb on - strand at 2197.798 kb on - strand at 2197.834 kb on - strand at 2197.834 kb on - strand at 2197.854 kb on - strand at 2197.868 kb on + strand at 2197.939 kb on - strand at 2197.939 kb on - strand at 2197.970 kb on - strand at 2198.101 kb on - strand, within Sama_R0069 at 2198.101 kb on - strand, within Sama_R0069 at 2198.101 kb on - strand, within Sama_R0069 at 2198.101 kb on - strand, within Sama_R0069 at 2198.103 kb on - strand, within Sama_R0069 at 2198.185 kb on + strand at 2198.186 kb on - strand at 2198.194 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 remove 2,195,623 + +0.6 2,195,623 + +0.9 2,195,993 + Sama_1804 0.41 +0.1 2,195,993 + Sama_1804 0.41 +1.6 2,195,999 + Sama_1804 0.42 +0.4 2,196,020 + Sama_1804 0.44 +1.3 2,196,020 + Sama_1804 0.44 +0.9 2,196,053 + Sama_1804 0.48 -0.3 2,196,316 + Sama_1804 0.77 -0.2 2,196,316 + Sama_1804 0.77 +0.5 2,196,352 + Sama_1804 0.81 +1.1 2,196,352 + Sama_1804 0.81 +0.8 2,196,359 + Sama_1804 0.82 +2.2 2,196,464 + +0.6 2,196,543 + -0.3 2,196,664 - +2.0 2,196,685 + +2.9 2,196,686 - +0.1 2,196,786 + Sama_1805 0.16 +1.4 2,196,787 - Sama_1805 0.16 +1.1 2,196,821 + Sama_1805 0.19 +3.9 2,196,836 + Sama_1805 0.20 +0.7 2,197,037 - Sama_1805 0.37 +0.5 2,197,126 - Sama_1805 0.44 -1.3 2,197,126 - Sama_1805 0.44 +2.0 2,197,148 - Sama_1805 0.46 +0.8 2,197,257 + Sama_1805 0.55 -0.3 2,197,339 + Sama_1805 0.62 +0.5 2,197,339 + Sama_1805 0.62 +0.8 2,197,340 - Sama_1805 0.62 +0.7 2,197,340 - Sama_1805 0.62 +0.9 2,197,340 - Sama_1805 0.62 -0.1 2,197,340 - Sama_1805 0.62 +0.3 2,197,343 - Sama_1805 0.62 +1.4 2,197,343 - Sama_1805 0.62 +2.7 2,197,349 - Sama_1805 0.63 +1.9 2,197,565 + Sama_1805 0.81 +0.2 2,197,566 - Sama_1805 0.81 +2.5 2,197,566 - Sama_1805 0.81 -0.9 2,197,567 + Sama_1805 0.81 +0.5 2,197,567 + Sama_1805 0.81 +0.1 2,197,568 - Sama_1805 0.81 -0.3 2,197,568 - Sama_1805 0.81 +0.5 2,197,594 + Sama_1805 0.84 +1.1 2,197,654 - Sama_1805 0.89 +1.2 2,197,680 - -0.7 2,197,680 - +0.7 2,197,682 - +0.9 2,197,682 - +0.7 2,197,707 - +1.4 2,197,786 - +0.9 2,197,786 - +2.9 2,197,786 - +1.5 2,197,798 - -0.9 2,197,834 - +0.5 2,197,834 - -0.1 2,197,854 - +0.0 2,197,868 + +0.7 2,197,939 - +0.8 2,197,939 - +0.2 2,197,970 - +2.1 2,198,101 - Sama_R0069 0.43 +0.1 2,198,101 - Sama_R0069 0.43 -0.8 2,198,101 - Sama_R0069 0.43 +0.4 2,198,101 - Sama_R0069 0.43 +1.1 2,198,103 - Sama_R0069 0.46 +0.5 2,198,185 + +1.7 2,198,186 - -0.3 2,198,194 - -0.2
Or see this region's nucleotide sequence