Strain Fitness in Shewanella amazonensis SB2B around Sama_1805

Experiment: Tween 20

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1804 and Sama_1805 are separated by 72 nucleotidesSama_1805 and Sama_R0068 are separated by 183 nucleotidesSama_R0068 and Sama_R0069 are separated by 20 nucleotidesSama_R0069 and Sama_1806 are separated by 156 nucleotides Sama_1804: Sama_1804 - hypothetical protein (RefSeq), at 2,195,616 to 2,196,524 _1804 Sama_1805: Sama_1805 - aromatic amino acid aminotransferase (RefSeq), at 2,196,597 to 2,197,790 _1805 Sama_R0068: Sama_R0068 - tRNA-Cys (RefSeq), at 2,197,974 to 2,198,047 _R0068 Sama_R0069: Sama_R0069 - tRNA-Gly (RefSeq), at 2,198,068 to 2,198,143 _R0069 Sama_1806: Sama_1806 - glyceraldehyde-3-phosphate dehydrogenase (RefSeq), at 2,198,300 to 2,199,739 _1806 Position (kb) 2196 2197 2198Strain fitness (log2 ratio) -1 0 1 2 3 4at 2195.623 kb on + strandat 2195.623 kb on + strandat 2195.993 kb on + strand, within Sama_1804at 2195.993 kb on + strand, within Sama_1804at 2195.999 kb on + strand, within Sama_1804at 2196.020 kb on + strand, within Sama_1804at 2196.020 kb on + strand, within Sama_1804at 2196.053 kb on + strand, within Sama_1804at 2196.316 kb on + strand, within Sama_1804at 2196.316 kb on + strand, within Sama_1804at 2196.352 kb on + strand, within Sama_1804at 2196.352 kb on + strand, within Sama_1804at 2196.359 kb on + strand, within Sama_1804at 2196.464 kb on + strandat 2196.543 kb on + strandat 2196.664 kb on - strandat 2196.685 kb on + strandat 2196.686 kb on - strandat 2196.786 kb on + strand, within Sama_1805at 2196.787 kb on - strand, within Sama_1805at 2196.821 kb on + strand, within Sama_1805at 2196.836 kb on + strand, within Sama_1805at 2197.037 kb on - strand, within Sama_1805at 2197.126 kb on - strand, within Sama_1805at 2197.126 kb on - strand, within Sama_1805at 2197.148 kb on - strand, within Sama_1805at 2197.257 kb on + strand, within Sama_1805at 2197.339 kb on + strand, within Sama_1805at 2197.339 kb on + strand, within Sama_1805at 2197.340 kb on - strand, within Sama_1805at 2197.340 kb on - strand, within Sama_1805at 2197.340 kb on - strand, within Sama_1805at 2197.340 kb on - strand, within Sama_1805at 2197.343 kb on - strand, within Sama_1805at 2197.343 kb on - strand, within Sama_1805at 2197.349 kb on - strand, within Sama_1805at 2197.565 kb on + strand, within Sama_1805at 2197.566 kb on - strand, within Sama_1805at 2197.566 kb on - strand, within Sama_1805at 2197.567 kb on + strand, within Sama_1805at 2197.567 kb on + strand, within Sama_1805at 2197.568 kb on - strand, within Sama_1805at 2197.568 kb on - strand, within Sama_1805at 2197.594 kb on + strand, within Sama_1805at 2197.654 kb on - strand, within Sama_1805at 2197.680 kb on - strandat 2197.680 kb on - strandat 2197.682 kb on - strandat 2197.682 kb on - strandat 2197.707 kb on - strandat 2197.786 kb on - strandat 2197.786 kb on - strandat 2197.786 kb on - strandat 2197.798 kb on - strandat 2197.834 kb on - strandat 2197.834 kb on - strandat 2197.854 kb on - strandat 2197.868 kb on + strandat 2197.939 kb on - strandat 2197.939 kb on - strandat 2197.970 kb on - strandat 2198.101 kb on - strand, within Sama_R0069at 2198.101 kb on - strand, within Sama_R0069at 2198.101 kb on - strand, within Sama_R0069at 2198.101 kb on - strand, within Sama_R0069at 2198.103 kb on - strand, within Sama_R0069at 2198.185 kb on + strandat 2198.186 kb on - strandat 2198.194 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20
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2,195,623 + +0.6
2,195,623 + +0.9
2,195,993 + Sama_1804 0.41 +0.1
2,195,993 + Sama_1804 0.41 +1.6
2,195,999 + Sama_1804 0.42 +0.4
2,196,020 + Sama_1804 0.44 +1.3
2,196,020 + Sama_1804 0.44 +0.9
2,196,053 + Sama_1804 0.48 -0.3
2,196,316 + Sama_1804 0.77 -0.2
2,196,316 + Sama_1804 0.77 +0.5
2,196,352 + Sama_1804 0.81 +1.1
2,196,352 + Sama_1804 0.81 +0.8
2,196,359 + Sama_1804 0.82 +2.2
2,196,464 + +0.6
2,196,543 + -0.3
2,196,664 - +2.0
2,196,685 + +2.9
2,196,686 - +0.1
2,196,786 + Sama_1805 0.16 +1.4
2,196,787 - Sama_1805 0.16 +1.1
2,196,821 + Sama_1805 0.19 +3.9
2,196,836 + Sama_1805 0.20 +0.7
2,197,037 - Sama_1805 0.37 +0.5
2,197,126 - Sama_1805 0.44 -1.3
2,197,126 - Sama_1805 0.44 +2.0
2,197,148 - Sama_1805 0.46 +0.8
2,197,257 + Sama_1805 0.55 -0.3
2,197,339 + Sama_1805 0.62 +0.5
2,197,339 + Sama_1805 0.62 +0.8
2,197,340 - Sama_1805 0.62 +0.7
2,197,340 - Sama_1805 0.62 +0.9
2,197,340 - Sama_1805 0.62 -0.1
2,197,340 - Sama_1805 0.62 +0.3
2,197,343 - Sama_1805 0.62 +1.4
2,197,343 - Sama_1805 0.62 +2.7
2,197,349 - Sama_1805 0.63 +1.9
2,197,565 + Sama_1805 0.81 +0.2
2,197,566 - Sama_1805 0.81 +2.5
2,197,566 - Sama_1805 0.81 -0.9
2,197,567 + Sama_1805 0.81 +0.5
2,197,567 + Sama_1805 0.81 +0.1
2,197,568 - Sama_1805 0.81 -0.3
2,197,568 - Sama_1805 0.81 +0.5
2,197,594 + Sama_1805 0.84 +1.1
2,197,654 - Sama_1805 0.89 +1.2
2,197,680 - -0.7
2,197,680 - +0.7
2,197,682 - +0.9
2,197,682 - +0.7
2,197,707 - +1.4
2,197,786 - +0.9
2,197,786 - +2.9
2,197,786 - +1.5
2,197,798 - -0.9
2,197,834 - +0.5
2,197,834 - -0.1
2,197,854 - +0.0
2,197,868 + +0.7
2,197,939 - +0.8
2,197,939 - +0.2
2,197,970 - +2.1
2,198,101 - Sama_R0069 0.43 +0.1
2,198,101 - Sama_R0069 0.43 -0.8
2,198,101 - Sama_R0069 0.43 +0.4
2,198,101 - Sama_R0069 0.43 +1.1
2,198,103 - Sama_R0069 0.46 +0.5
2,198,185 + +1.7
2,198,186 - -0.3
2,198,194 - -0.2

Or see this region's nucleotide sequence