Experiment: Tween 20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1719 and Sama_1720 are separated by 5 nucleotides Sama_1720 and Sama_1721 overlap by 4 nucleotides Sama_1721 and ansA are separated by 54 nucleotides ansA and Sama_1723 are separated by 164 nucleotides
Sama_1719: Sama_1719 - zinc carboxypeptidase domain-containing protein (RefSeq), at 2,104,525 to 2,105,652
_1719
Sama_1720: Sama_1720 - hypothetical protein (RefSeq), at 2,105,658 to 2,105,975
_1720
Sama_1721: Sama_1721 - hypothetical protein (RefSeq), at 2,105,972 to 2,106,265
_1721
Sama_1722: ansA - cytoplasmic asparaginase I (RefSeq), at 2,106,320 to 2,107,333
ansA
Sama_1723: Sama_1723 - signal peptide peptidase SppA, 67K type (RefSeq), at 2,107,498 to 2,109,351
_1723
Position (kb)
2106
2107
2108 Strain fitness (log2 ratio)
-2
-1
0
1 at 2105.320 kb on + strand, within Sama_1719 at 2105.348 kb on + strand, within Sama_1719 at 2105.348 kb on + strand, within Sama_1719 at 2105.650 kb on + strand at 2105.702 kb on + strand, within Sama_1720 at 2105.702 kb on + strand, within Sama_1720 at 2105.840 kb on - strand, within Sama_1720 at 2105.840 kb on - strand, within Sama_1720 at 2105.953 kb on + strand at 2105.953 kb on + strand at 2105.953 kb on + strand at 2105.957 kb on + strand at 2105.957 kb on + strand at 2106.017 kb on + strand, within Sama_1721 at 2106.017 kb on + strand, within Sama_1721 at 2106.069 kb on + strand, within Sama_1721 at 2106.069 kb on + strand, within Sama_1721 at 2106.116 kb on + strand, within Sama_1721 at 2106.117 kb on - strand, within Sama_1721 at 2106.208 kb on + strand, within Sama_1721 at 2106.208 kb on + strand, within Sama_1721 at 2106.282 kb on + strand at 2106.368 kb on + strand at 2106.368 kb on + strand at 2106.452 kb on - strand, within ansA at 2106.715 kb on + strand, within ansA at 2106.716 kb on - strand, within ansA at 2106.924 kb on + strand, within ansA at 2106.924 kb on + strand, within ansA at 2106.924 kb on + strand, within ansA at 2106.924 kb on + strand, within ansA at 2106.924 kb on + strand, within ansA at 2107.025 kb on - strand, within ansA at 2107.048 kb on - strand, within ansA at 2107.099 kb on - strand, within ansA at 2107.174 kb on - strand, within ansA at 2107.368 kb on + strand at 2107.371 kb on - strand at 2107.428 kb on + strand at 2107.428 kb on + strand at 2107.433 kb on + strand at 2107.434 kb on - strand at 2107.473 kb on - strand at 2107.500 kb on - strand at 2107.515 kb on - strand at 2107.524 kb on - strand at 2107.529 kb on + strand at 2107.529 kb on + strand at 2107.529 kb on + strand at 2107.530 kb on - strand at 2107.530 kb on - strand at 2107.530 kb on - strand at 2107.530 kb on - strand at 2107.530 kb on - strand at 2107.530 kb on - strand at 2107.530 kb on - strand at 2107.532 kb on - strand at 2107.761 kb on + strand, within Sama_1723 at 2107.762 kb on - strand, within Sama_1723 at 2107.762 kb on - strand, within Sama_1723 at 2107.893 kb on - strand, within Sama_1723 at 2108.150 kb on - strand, within Sama_1723 at 2108.231 kb on - strand, within Sama_1723 at 2108.292 kb on + strand, within Sama_1723 at 2108.293 kb on - strand, within Sama_1723
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 remove 2,105,320 + Sama_1719 0.70 +0.1 2,105,348 + Sama_1719 0.73 +1.2 2,105,348 + Sama_1719 0.73 -0.4 2,105,650 + -0.0 2,105,702 + Sama_1720 0.14 -1.4 2,105,702 + Sama_1720 0.14 -1.5 2,105,840 - Sama_1720 0.57 +0.5 2,105,840 - Sama_1720 0.57 -0.3 2,105,953 + +0.5 2,105,953 + +0.3 2,105,953 + +0.4 2,105,957 + -0.3 2,105,957 + +1.1 2,106,017 + Sama_1721 0.15 +1.6 2,106,017 + Sama_1721 0.15 -1.2 2,106,069 + Sama_1721 0.33 +0.2 2,106,069 + Sama_1721 0.33 -1.2 2,106,116 + Sama_1721 0.49 -1.5 2,106,117 - Sama_1721 0.49 -1.5 2,106,208 + Sama_1721 0.80 -0.9 2,106,208 + Sama_1721 0.80 -0.2 2,106,282 + -0.7 2,106,368 + +0.1 2,106,368 + +0.4 2,106,452 - ansA Sama_1722 0.13 +0.5 2,106,715 + ansA Sama_1722 0.39 -0.5 2,106,716 - ansA Sama_1722 0.39 +0.8 2,106,924 + ansA Sama_1722 0.60 +0.1 2,106,924 + ansA Sama_1722 0.60 -0.8 2,106,924 + ansA Sama_1722 0.60 -0.5 2,106,924 + ansA Sama_1722 0.60 +0.9 2,106,924 + ansA Sama_1722 0.60 -0.9 2,107,025 - ansA Sama_1722 0.70 -0.4 2,107,048 - ansA Sama_1722 0.72 +1.4 2,107,099 - ansA Sama_1722 0.77 -0.5 2,107,174 - ansA Sama_1722 0.84 -0.6 2,107,368 + -0.4 2,107,371 - +0.1 2,107,428 + +0.2 2,107,428 + -0.1 2,107,433 + -0.3 2,107,434 - +0.5 2,107,473 - -0.8 2,107,500 - +0.1 2,107,515 - -0.9 2,107,524 - -0.4 2,107,529 + -1.3 2,107,529 + -0.5 2,107,529 + +0.1 2,107,530 - -1.0 2,107,530 - -0.9 2,107,530 - +0.4 2,107,530 - +0.2 2,107,530 - -1.4 2,107,530 - -2.1 2,107,530 - -1.9 2,107,532 - -1.8 2,107,761 + Sama_1723 0.14 +0.0 2,107,762 - Sama_1723 0.14 +0.5 2,107,762 - Sama_1723 0.14 -1.4 2,107,893 - Sama_1723 0.21 +0.0 2,108,150 - Sama_1723 0.35 -0.7 2,108,231 - Sama_1723 0.40 +0.3 2,108,292 + Sama_1723 0.43 -0.4 2,108,293 - Sama_1723 0.43 -0.1
Or see this region's nucleotide sequence