Strain Fitness in Shewanella amazonensis SB2B around Sama_1722

Experiment: Tween 20

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1719 and Sama_1720 are separated by 5 nucleotidesSama_1720 and Sama_1721 overlap by 4 nucleotidesSama_1721 and ansA are separated by 54 nucleotidesansA and Sama_1723 are separated by 164 nucleotides Sama_1719: Sama_1719 - zinc carboxypeptidase domain-containing protein (RefSeq), at 2,104,525 to 2,105,652 _1719 Sama_1720: Sama_1720 - hypothetical protein (RefSeq), at 2,105,658 to 2,105,975 _1720 Sama_1721: Sama_1721 - hypothetical protein (RefSeq), at 2,105,972 to 2,106,265 _1721 Sama_1722: ansA - cytoplasmic asparaginase I (RefSeq), at 2,106,320 to 2,107,333 ansA Sama_1723: Sama_1723 - signal peptide peptidase SppA, 67K type (RefSeq), at 2,107,498 to 2,109,351 _1723 Position (kb) 2106 2107 2108Strain fitness (log2 ratio) -2 -1 0 1at 2105.320 kb on + strand, within Sama_1719at 2105.348 kb on + strand, within Sama_1719at 2105.348 kb on + strand, within Sama_1719at 2105.650 kb on + strandat 2105.702 kb on + strand, within Sama_1720at 2105.702 kb on + strand, within Sama_1720at 2105.840 kb on - strand, within Sama_1720at 2105.840 kb on - strand, within Sama_1720at 2105.953 kb on + strandat 2105.953 kb on + strandat 2105.953 kb on + strandat 2105.957 kb on + strandat 2105.957 kb on + strandat 2106.017 kb on + strand, within Sama_1721at 2106.017 kb on + strand, within Sama_1721at 2106.069 kb on + strand, within Sama_1721at 2106.069 kb on + strand, within Sama_1721at 2106.116 kb on + strand, within Sama_1721at 2106.117 kb on - strand, within Sama_1721at 2106.208 kb on + strand, within Sama_1721at 2106.208 kb on + strand, within Sama_1721at 2106.282 kb on + strandat 2106.368 kb on + strandat 2106.368 kb on + strandat 2106.452 kb on - strand, within ansAat 2106.715 kb on + strand, within ansAat 2106.716 kb on - strand, within ansAat 2106.924 kb on + strand, within ansAat 2106.924 kb on + strand, within ansAat 2106.924 kb on + strand, within ansAat 2106.924 kb on + strand, within ansAat 2106.924 kb on + strand, within ansAat 2107.025 kb on - strand, within ansAat 2107.048 kb on - strand, within ansAat 2107.099 kb on - strand, within ansAat 2107.174 kb on - strand, within ansAat 2107.368 kb on + strandat 2107.371 kb on - strandat 2107.428 kb on + strandat 2107.428 kb on + strandat 2107.433 kb on + strandat 2107.434 kb on - strandat 2107.473 kb on - strandat 2107.500 kb on - strandat 2107.515 kb on - strandat 2107.524 kb on - strandat 2107.529 kb on + strandat 2107.529 kb on + strandat 2107.529 kb on + strandat 2107.530 kb on - strandat 2107.530 kb on - strandat 2107.530 kb on - strandat 2107.530 kb on - strandat 2107.530 kb on - strandat 2107.530 kb on - strandat 2107.530 kb on - strandat 2107.532 kb on - strandat 2107.761 kb on + strand, within Sama_1723at 2107.762 kb on - strand, within Sama_1723at 2107.762 kb on - strand, within Sama_1723at 2107.893 kb on - strand, within Sama_1723at 2108.150 kb on - strand, within Sama_1723at 2108.231 kb on - strand, within Sama_1723at 2108.292 kb on + strand, within Sama_1723at 2108.293 kb on - strand, within Sama_1723

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20
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2,105,320 + Sama_1719 0.70 +0.1
2,105,348 + Sama_1719 0.73 +1.2
2,105,348 + Sama_1719 0.73 -0.4
2,105,650 + -0.0
2,105,702 + Sama_1720 0.14 -1.4
2,105,702 + Sama_1720 0.14 -1.5
2,105,840 - Sama_1720 0.57 +0.5
2,105,840 - Sama_1720 0.57 -0.3
2,105,953 + +0.5
2,105,953 + +0.3
2,105,953 + +0.4
2,105,957 + -0.3
2,105,957 + +1.1
2,106,017 + Sama_1721 0.15 +1.6
2,106,017 + Sama_1721 0.15 -1.2
2,106,069 + Sama_1721 0.33 +0.2
2,106,069 + Sama_1721 0.33 -1.2
2,106,116 + Sama_1721 0.49 -1.5
2,106,117 - Sama_1721 0.49 -1.5
2,106,208 + Sama_1721 0.80 -0.9
2,106,208 + Sama_1721 0.80 -0.2
2,106,282 + -0.7
2,106,368 + +0.1
2,106,368 + +0.4
2,106,452 - ansA Sama_1722 0.13 +0.5
2,106,715 + ansA Sama_1722 0.39 -0.5
2,106,716 - ansA Sama_1722 0.39 +0.8
2,106,924 + ansA Sama_1722 0.60 +0.1
2,106,924 + ansA Sama_1722 0.60 -0.8
2,106,924 + ansA Sama_1722 0.60 -0.5
2,106,924 + ansA Sama_1722 0.60 +0.9
2,106,924 + ansA Sama_1722 0.60 -0.9
2,107,025 - ansA Sama_1722 0.70 -0.4
2,107,048 - ansA Sama_1722 0.72 +1.4
2,107,099 - ansA Sama_1722 0.77 -0.5
2,107,174 - ansA Sama_1722 0.84 -0.6
2,107,368 + -0.4
2,107,371 - +0.1
2,107,428 + +0.2
2,107,428 + -0.1
2,107,433 + -0.3
2,107,434 - +0.5
2,107,473 - -0.8
2,107,500 - +0.1
2,107,515 - -0.9
2,107,524 - -0.4
2,107,529 + -1.3
2,107,529 + -0.5
2,107,529 + +0.1
2,107,530 - -1.0
2,107,530 - -0.9
2,107,530 - +0.4
2,107,530 - +0.2
2,107,530 - -1.4
2,107,530 - -2.1
2,107,530 - -1.9
2,107,532 - -1.8
2,107,761 + Sama_1723 0.14 +0.0
2,107,762 - Sama_1723 0.14 +0.5
2,107,762 - Sama_1723 0.14 -1.4
2,107,893 - Sama_1723 0.21 +0.0
2,108,150 - Sama_1723 0.35 -0.7
2,108,231 - Sama_1723 0.40 +0.3
2,108,292 + Sama_1723 0.43 -0.4
2,108,293 - Sama_1723 0.43 -0.1

Or see this region's nucleotide sequence