Strain Fitness in Shewanella amazonensis SB2B around Sama_1368

Experiment: Tween 20

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1367 and Sama_1368 are separated by 65 nucleotidesSama_1368 and Sama_1369 overlap by 1 nucleotidesSama_1369 and Sama_1370 are separated by 6 nucleotides Sama_1367: Sama_1367 - short chain dehydrogenase/reductase family oxidoreductase (RefSeq), at 1,659,088 to 1,659,984 _1367 Sama_1368: Sama_1368 - palmitoyl-CoA hydrolase (RefSeq), at 1,660,050 to 1,660,919 _1368 Sama_1369: Sama_1369 - hypothetical protein (RefSeq), at 1,660,919 to 1,661,326 _1369 Sama_1370: Sama_1370 - hypothetical protein (RefSeq), at 1,661,333 to 1,661,920 _1370 Position (kb) 1660 1661Strain fitness (log2 ratio) -2 -1 0 1 2at 1659.148 kb on + strandat 1659.221 kb on + strand, within Sama_1367at 1659.221 kb on + strand, within Sama_1367at 1659.222 kb on - strand, within Sama_1367at 1659.269 kb on - strand, within Sama_1367at 1659.302 kb on + strand, within Sama_1367at 1659.303 kb on - strand, within Sama_1367at 1659.303 kb on - strand, within Sama_1367at 1659.354 kb on + strand, within Sama_1367at 1659.361 kb on - strand, within Sama_1367at 1659.406 kb on - strand, within Sama_1367at 1659.494 kb on - strand, within Sama_1367at 1659.532 kb on + strand, within Sama_1367at 1659.581 kb on + strand, within Sama_1367at 1659.582 kb on - strand, within Sama_1367at 1659.591 kb on - strand, within Sama_1367at 1659.823 kb on + strand, within Sama_1367at 1659.823 kb on + strand, within Sama_1367at 1659.823 kb on + strand, within Sama_1367at 1659.823 kb on + strand, within Sama_1367at 1659.824 kb on - strand, within Sama_1367at 1659.824 kb on - strand, within Sama_1367at 1659.829 kb on + strand, within Sama_1367at 1659.829 kb on + strand, within Sama_1367at 1659.845 kb on + strand, within Sama_1367at 1659.845 kb on + strand, within Sama_1367at 1659.845 kb on + strand, within Sama_1367at 1659.845 kb on + strand, within Sama_1367at 1659.846 kb on - strand, within Sama_1367at 1660.012 kb on + strandat 1660.033 kb on + strandat 1660.046 kb on + strandat 1660.046 kb on + strandat 1660.047 kb on - strandat 1660.047 kb on - strandat 1660.061 kb on - strandat 1660.072 kb on + strandat 1660.073 kb on - strandat 1660.073 kb on - strandat 1660.073 kb on - strandat 1660.073 kb on - strandat 1660.113 kb on + strandat 1660.114 kb on - strandat 1660.237 kb on - strand, within Sama_1368at 1660.237 kb on - strand, within Sama_1368at 1660.244 kb on - strand, within Sama_1368at 1660.275 kb on + strand, within Sama_1368at 1660.275 kb on + strand, within Sama_1368at 1660.275 kb on + strand, within Sama_1368at 1660.275 kb on + strand, within Sama_1368at 1660.275 kb on + strand, within Sama_1368at 1660.276 kb on - strand, within Sama_1368at 1660.276 kb on - strand, within Sama_1368at 1660.405 kb on + strand, within Sama_1368at 1660.405 kb on + strand, within Sama_1368at 1660.405 kb on + strand, within Sama_1368at 1660.405 kb on + strand, within Sama_1368at 1660.406 kb on - strand, within Sama_1368at 1660.406 kb on - strand, within Sama_1368at 1660.406 kb on - strand, within Sama_1368at 1660.406 kb on - strand, within Sama_1368at 1660.406 kb on - strand, within Sama_1368at 1660.409 kb on + strand, within Sama_1368at 1660.409 kb on + strand, within Sama_1368at 1660.409 kb on + strand, within Sama_1368at 1660.409 kb on + strand, within Sama_1368at 1660.409 kb on + strand, within Sama_1368at 1660.409 kb on + strand, within Sama_1368at 1660.410 kb on - strand, within Sama_1368at 1660.438 kb on + strand, within Sama_1368at 1660.438 kb on + strand, within Sama_1368at 1660.439 kb on - strand, within Sama_1368at 1660.650 kb on + strand, within Sama_1368at 1660.651 kb on - strand, within Sama_1368at 1660.651 kb on - strand, within Sama_1368at 1660.786 kb on + strand, within Sama_1368at 1660.787 kb on - strand, within Sama_1368at 1660.788 kb on + strand, within Sama_1368at 1660.788 kb on + strand, within Sama_1368at 1660.788 kb on + strand, within Sama_1368at 1660.788 kb on + strand, within Sama_1368at 1660.788 kb on + strand, within Sama_1368at 1660.788 kb on + strand, within Sama_1368at 1660.788 kb on + strand, within Sama_1368at 1660.788 kb on + strand, within Sama_1368at 1660.788 kb on + strand, within Sama_1368at 1660.788 kb on + strand, within Sama_1368at 1660.788 kb on + strand, within Sama_1368at 1660.789 kb on - strand, within Sama_1368at 1660.789 kb on - strand, within Sama_1368at 1660.789 kb on - strand, within Sama_1368at 1660.789 kb on - strand, within Sama_1368at 1660.794 kb on - strand, within Sama_1368at 1660.794 kb on - strand, within Sama_1368at 1660.877 kb on + strandat 1660.898 kb on + strandat 1660.898 kb on + strandat 1660.898 kb on + strandat 1661.204 kb on + strand, within Sama_1369at 1661.221 kb on + strand, within Sama_1369at 1661.221 kb on + strand, within Sama_1369at 1661.221 kb on + strand, within Sama_1369at 1661.222 kb on - strand, within Sama_1369at 1661.255 kb on + strand, within Sama_1369at 1661.325 kb on - strandat 1661.474 kb on + strand, within Sama_1370at 1661.474 kb on + strand, within Sama_1370at 1661.475 kb on - strand, within Sama_1370at 1661.475 kb on - strand, within Sama_1370at 1661.475 kb on - strand, within Sama_1370at 1661.475 kb on - strand, within Sama_1370at 1661.475 kb on - strand, within Sama_1370at 1661.475 kb on - strand, within Sama_1370at 1661.475 kb on - strand, within Sama_1370at 1661.565 kb on - strand, within Sama_1370

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20
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1,659,148 + +0.5
1,659,221 + Sama_1367 0.15 +1.4
1,659,221 + Sama_1367 0.15 -1.1
1,659,222 - Sama_1367 0.15 +0.4
1,659,269 - Sama_1367 0.20 -1.4
1,659,302 + Sama_1367 0.24 +0.4
1,659,303 - Sama_1367 0.24 +0.5
1,659,303 - Sama_1367 0.24 -0.1
1,659,354 + Sama_1367 0.30 -1.1
1,659,361 - Sama_1367 0.30 +0.4
1,659,406 - Sama_1367 0.35 -1.6
1,659,494 - Sama_1367 0.45 -0.2
1,659,532 + Sama_1367 0.49 -0.8
1,659,581 + Sama_1367 0.55 -0.2
1,659,582 - Sama_1367 0.55 -1.2
1,659,591 - Sama_1367 0.56 +0.7
1,659,823 + Sama_1367 0.82 +0.4
1,659,823 + Sama_1367 0.82 -0.3
1,659,823 + Sama_1367 0.82 -0.2
1,659,823 + Sama_1367 0.82 +0.6
1,659,824 - Sama_1367 0.82 -0.3
1,659,824 - Sama_1367 0.82 +1.9
1,659,829 + Sama_1367 0.83 +1.4
1,659,829 + Sama_1367 0.83 +0.5
1,659,845 + Sama_1367 0.84 +1.4
1,659,845 + Sama_1367 0.84 +1.8
1,659,845 + Sama_1367 0.84 +1.4
1,659,845 + Sama_1367 0.84 +0.4
1,659,846 - Sama_1367 0.85 +0.2
1,660,012 + +0.0
1,660,033 + +0.9
1,660,046 + -1.8
1,660,046 + -0.2
1,660,047 - -0.1
1,660,047 - +0.2
1,660,061 - +1.8
1,660,072 + +0.2
1,660,073 - +1.0
1,660,073 - -0.2
1,660,073 - +0.3
1,660,073 - -0.8
1,660,113 + +0.4
1,660,114 - -1.1
1,660,237 - Sama_1368 0.21 +0.8
1,660,237 - Sama_1368 0.21 -0.3
1,660,244 - Sama_1368 0.22 +0.5
1,660,275 + Sama_1368 0.26 +1.1
1,660,275 + Sama_1368 0.26 -0.2
1,660,275 + Sama_1368 0.26 +0.7
1,660,275 + Sama_1368 0.26 +0.5
1,660,275 + Sama_1368 0.26 -0.5
1,660,276 - Sama_1368 0.26 +2.4
1,660,276 - Sama_1368 0.26 -0.8
1,660,405 + Sama_1368 0.41 +0.2
1,660,405 + Sama_1368 0.41 -0.3
1,660,405 + Sama_1368 0.41 -0.5
1,660,405 + Sama_1368 0.41 +0.6
1,660,406 - Sama_1368 0.41 +0.6
1,660,406 - Sama_1368 0.41 +1.4
1,660,406 - Sama_1368 0.41 +0.4
1,660,406 - Sama_1368 0.41 -0.1
1,660,406 - Sama_1368 0.41 -0.1
1,660,409 + Sama_1368 0.41 +0.7
1,660,409 + Sama_1368 0.41 +0.5
1,660,409 + Sama_1368 0.41 -1.0
1,660,409 + Sama_1368 0.41 +0.8
1,660,409 + Sama_1368 0.41 -0.2
1,660,409 + Sama_1368 0.41 +0.5
1,660,410 - Sama_1368 0.41 +0.8
1,660,438 + Sama_1368 0.45 -0.0
1,660,438 + Sama_1368 0.45 -0.7
1,660,439 - Sama_1368 0.45 -1.4
1,660,650 + Sama_1368 0.69 +0.6
1,660,651 - Sama_1368 0.69 +0.2
1,660,651 - Sama_1368 0.69 -0.2
1,660,786 + Sama_1368 0.85 +2.7
1,660,787 - Sama_1368 0.85 -0.5
1,660,788 + Sama_1368 0.85 +0.0
1,660,788 + Sama_1368 0.85 +0.2
1,660,788 + Sama_1368 0.85 +0.3
1,660,788 + Sama_1368 0.85 -1.2
1,660,788 + Sama_1368 0.85 +1.4
1,660,788 + Sama_1368 0.85 -0.3
1,660,788 + Sama_1368 0.85 +0.2
1,660,788 + Sama_1368 0.85 -1.8
1,660,788 + Sama_1368 0.85 -2.1
1,660,788 + Sama_1368 0.85 +0.3
1,660,788 + Sama_1368 0.85 -0.1
1,660,789 - Sama_1368 0.85 +2.1
1,660,789 - Sama_1368 0.85 +0.7
1,660,789 - Sama_1368 0.85 +0.3
1,660,789 - Sama_1368 0.85 -0.8
1,660,794 - Sama_1368 0.86 -1.8
1,660,794 - Sama_1368 0.86 -1.6
1,660,877 + +1.3
1,660,898 + +1.1
1,660,898 + -0.5
1,660,898 + -0.8
1,661,204 + Sama_1369 0.70 +0.2
1,661,221 + Sama_1369 0.74 -0.1
1,661,221 + Sama_1369 0.74 -0.2
1,661,221 + Sama_1369 0.74 +0.4
1,661,222 - Sama_1369 0.74 +1.9
1,661,255 + Sama_1369 0.82 -0.2
1,661,325 - +1.5
1,661,474 + Sama_1370 0.24 -0.8
1,661,474 + Sama_1370 0.24 -0.1
1,661,475 - Sama_1370 0.24 +0.0
1,661,475 - Sama_1370 0.24 +0.2
1,661,475 - Sama_1370 0.24 +0.4
1,661,475 - Sama_1370 0.24 +0.2
1,661,475 - Sama_1370 0.24 +0.7
1,661,475 - Sama_1370 0.24 +0.3
1,661,475 - Sama_1370 0.24 +0.4
1,661,565 - Sama_1370 0.39 -0.8

Or see this region's nucleotide sequence