Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09290 and PGA1_c09300 are separated by 176 nucleotides PGA1_c09300 and PGA1_c09310 are separated by 101 nucleotides PGA1_c09310 and PGA1_c09320 are separated by 98 nucleotides PGA1_c09320 and PGA1_c09330 are separated by 1 nucleotides
PGA1_c09290: PGA1_c09290 - WGR domain., at 950,660 to 950,911
_c09290
PGA1_c09300: PGA1_c09300 - Peroxiredoxin, at 951,088 to 951,624
_c09300
PGA1_c09310: PGA1_c09310 - transcription regulator, AraC family, at 951,726 to 952,457
_c09310
PGA1_c09320: PGA1_c09320 - imidazole glycerol phosphate synthase subunit HisH, at 952,556 to 953,194
_c09320
PGA1_c09330: PGA1_c09330 - imidazoleglycerol-phosphate dehydratase HisB, at 953,196 to 953,783
_c09330
Position (kb) 951
952
953 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 950.781 kb on + strand, within PGA1_c09290 at 950.802 kb on + strand, within PGA1_c09290 at 950.802 kb on + strand, within PGA1_c09290 at 950.810 kb on - strand, within PGA1_c09290 at 950.812 kb on + strand, within PGA1_c09290 at 950.859 kb on + strand, within PGA1_c09290 at 950.859 kb on + strand, within PGA1_c09290 at 950.903 kb on + strand at 950.903 kb on + strand at 950.903 kb on + strand at 950.903 kb on + strand at 950.911 kb on - strand at 950.911 kb on - strand at 950.911 kb on - strand at 950.911 kb on - strand at 950.954 kb on + strand at 950.954 kb on + strand at 950.954 kb on - strand at 950.962 kb on - strand at 950.962 kb on - strand at 950.962 kb on - strand at 950.962 kb on - strand at 950.962 kb on - strand at 950.969 kb on + strand at 951.032 kb on - strand at 951.094 kb on - strand at 951.190 kb on + strand, within PGA1_c09300 at 951.190 kb on + strand, within PGA1_c09300 at 951.193 kb on - strand, within PGA1_c09300 at 951.195 kb on + strand, within PGA1_c09300 at 951.198 kb on - strand, within PGA1_c09300 at 951.198 kb on - strand, within PGA1_c09300 at 951.198 kb on - strand, within PGA1_c09300 at 951.203 kb on + strand, within PGA1_c09300 at 951.203 kb on - strand, within PGA1_c09300 at 951.203 kb on - strand, within PGA1_c09300 at 951.219 kb on + strand, within PGA1_c09300 at 951.230 kb on + strand, within PGA1_c09300 at 951.230 kb on + strand, within PGA1_c09300 at 951.238 kb on - strand, within PGA1_c09300 at 951.267 kb on + strand, within PGA1_c09300 at 951.275 kb on - strand, within PGA1_c09300 at 951.320 kb on - strand, within PGA1_c09300 at 951.350 kb on - strand, within PGA1_c09300 at 951.350 kb on - strand, within PGA1_c09300 at 951.350 kb on - strand, within PGA1_c09300 at 951.368 kb on + strand, within PGA1_c09300 at 951.371 kb on - strand, within PGA1_c09300 at 951.394 kb on + strand, within PGA1_c09300 at 951.402 kb on - strand, within PGA1_c09300 at 951.527 kb on + strand, within PGA1_c09300 at 951.540 kb on - strand, within PGA1_c09300 at 951.556 kb on - strand, within PGA1_c09300 at 951.589 kb on + strand at 951.589 kb on + strand at 951.589 kb on + strand at 951.594 kb on + strand at 951.597 kb on - strand at 951.597 kb on - strand at 951.628 kb on - strand at 951.632 kb on + strand at 951.679 kb on + strand at 951.739 kb on - strand at 951.742 kb on + strand at 951.747 kb on - strand at 951.783 kb on - strand at 951.797 kb on + strand at 951.797 kb on + strand at 951.839 kb on - strand, within PGA1_c09310 at 951.842 kb on + strand, within PGA1_c09310 at 951.882 kb on + strand, within PGA1_c09310 at 951.895 kb on - strand, within PGA1_c09310 at 951.895 kb on - strand, within PGA1_c09310 at 951.910 kb on + strand, within PGA1_c09310 at 951.918 kb on - strand, within PGA1_c09310 at 951.984 kb on + strand, within PGA1_c09310 at 951.990 kb on + strand, within PGA1_c09310 at 951.990 kb on + strand, within PGA1_c09310 at 952.018 kb on - strand, within PGA1_c09310 at 952.066 kb on - strand, within PGA1_c09310 at 952.125 kb on - strand, within PGA1_c09310 at 952.193 kb on + strand, within PGA1_c09310 at 952.214 kb on + strand, within PGA1_c09310 at 952.331 kb on + strand, within PGA1_c09310 at 952.353 kb on + strand, within PGA1_c09310 at 952.381 kb on + strand, within PGA1_c09310 at 952.389 kb on + strand at 952.412 kb on + strand at 952.412 kb on + strand at 952.413 kb on + strand at 952.413 kb on + strand at 952.420 kb on - strand at 952.420 kb on - strand at 952.425 kb on + strand at 952.425 kb on + strand at 952.450 kb on + strand at 952.452 kb on + strand at 952.469 kb on + strand at 952.523 kb on - strand at 952.523 kb on - strand at 952.561 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 950,781 + PGA1_c09290 0.48 -0.2 950,802 + PGA1_c09290 0.56 -0.1 950,802 + PGA1_c09290 0.56 +0.6 950,810 - PGA1_c09290 0.60 +0.6 950,812 + PGA1_c09290 0.60 +0.3 950,859 + PGA1_c09290 0.79 +1.2 950,859 + PGA1_c09290 0.79 +1.9 950,903 + +0.8 950,903 + -0.1 950,903 + -2.5 950,903 + +0.4 950,911 - -0.4 950,911 - +1.5 950,911 - +1.8 950,911 - +2.9 950,954 + +1.2 950,954 + +0.4 950,954 - +1.4 950,962 - -0.8 950,962 - -0.7 950,962 - -0.6 950,962 - -2.8 950,962 - +1.0 950,969 + +1.1 951,032 - +0.5 951,094 - +0.0 951,190 + PGA1_c09300 0.19 -0.2 951,190 + PGA1_c09300 0.19 -0.8 951,193 - PGA1_c09300 0.20 +0.5 951,195 + PGA1_c09300 0.20 -0.7 951,198 - PGA1_c09300 0.20 -0.7 951,198 - PGA1_c09300 0.20 -0.5 951,198 - PGA1_c09300 0.20 -1.0 951,203 + PGA1_c09300 0.21 +0.8 951,203 - PGA1_c09300 0.21 +0.9 951,203 - PGA1_c09300 0.21 +0.9 951,219 + PGA1_c09300 0.24 +0.6 951,230 + PGA1_c09300 0.26 +1.1 951,230 + PGA1_c09300 0.26 +1.4 951,238 - PGA1_c09300 0.28 +0.5 951,267 + PGA1_c09300 0.33 -0.0 951,275 - PGA1_c09300 0.35 -0.6 951,320 - PGA1_c09300 0.43 -0.8 951,350 - PGA1_c09300 0.49 +0.4 951,350 - PGA1_c09300 0.49 +0.1 951,350 - PGA1_c09300 0.49 +0.9 951,368 + PGA1_c09300 0.52 -0.9 951,371 - PGA1_c09300 0.53 -0.3 951,394 + PGA1_c09300 0.57 +0.3 951,402 - PGA1_c09300 0.58 +0.1 951,527 + PGA1_c09300 0.82 +0.0 951,540 - PGA1_c09300 0.84 +3.0 951,556 - PGA1_c09300 0.87 -1.1 951,589 + -2.0 951,589 + +2.2 951,589 + +1.0 951,594 + -1.8 951,597 - -0.4 951,597 - -0.5 951,628 - +1.3 951,632 + -0.5 951,679 + -0.6 951,739 - -1.4 951,742 + +1.0 951,747 - +0.4 951,783 - -1.7 951,797 + -0.2 951,797 + +0.8 951,839 - PGA1_c09310 0.15 +0.3 951,842 + PGA1_c09310 0.16 +0.4 951,882 + PGA1_c09310 0.21 +0.4 951,895 - PGA1_c09310 0.23 +0.5 951,895 - PGA1_c09310 0.23 +0.3 951,910 + PGA1_c09310 0.25 -0.1 951,918 - PGA1_c09310 0.26 +0.3 951,984 + PGA1_c09310 0.35 -2.7 951,990 + PGA1_c09310 0.36 +0.1 951,990 + PGA1_c09310 0.36 +0.2 952,018 - PGA1_c09310 0.40 +1.4 952,066 - PGA1_c09310 0.46 +2.0 952,125 - PGA1_c09310 0.55 +1.5 952,193 + PGA1_c09310 0.64 +1.6 952,214 + PGA1_c09310 0.67 +0.8 952,331 + PGA1_c09310 0.83 +1.1 952,353 + PGA1_c09310 0.86 +0.4 952,381 + PGA1_c09310 0.89 +0.8 952,389 + +0.3 952,412 + -0.1 952,412 + -0.6 952,413 + -1.7 952,413 + -0.9 952,420 - -1.3 952,420 - +0.0 952,425 + +1.0 952,425 + -0.1 952,450 + -1.7 952,452 + +0.6 952,469 + +0.6 952,523 - +0.2 952,523 - +0.0 952,561 - +1.2
Or see this region's nucleotide sequence