Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09120

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c09110 and PGA1_c09120 are separated by 460 nucleotidesPGA1_c09120 and PGA1_c09130 overlap by 1 nucleotides PGA1_c09110: PGA1_c09110 - thiamine biosynthesis protein ThiC, at 935,485 to 937,284 _c09110 PGA1_c09120: PGA1_c09120 - biotin synthase BioB, at 937,745 to 938,722 _c09120 PGA1_c09130: PGA1_c09130 - 8-amino-7-oxononanoate synthase BioF, at 938,722 to 939,861 _c09130 Position (kb) 937 938 939Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 936.830 kb on - strand, within PGA1_c09110at 936.904 kb on + strand, within PGA1_c09110at 936.906 kb on - strand, within PGA1_c09110at 936.912 kb on - strand, within PGA1_c09110at 936.912 kb on - strand, within PGA1_c09110at 936.913 kb on + strand, within PGA1_c09110at 936.913 kb on + strand, within PGA1_c09110at 936.921 kb on - strand, within PGA1_c09110at 936.937 kb on + strand, within PGA1_c09110at 937.010 kb on - strand, within PGA1_c09110at 937.050 kb on + strand, within PGA1_c09110at 937.079 kb on - strand, within PGA1_c09110at 937.104 kb on + strand, within PGA1_c09110at 937.130 kb on - strandat 937.130 kb on - strandat 937.132 kb on + strandat 937.147 kb on - strandat 937.161 kb on + strandat 937.168 kb on - strandat 937.233 kb on + strandat 937.292 kb on - strandat 937.294 kb on + strandat 937.301 kb on + strandat 937.361 kb on + strandat 937.369 kb on - strandat 937.382 kb on + strandat 937.425 kb on + strandat 937.450 kb on + strandat 937.458 kb on - strandat 937.524 kb on - strandat 937.524 kb on - strandat 937.530 kb on + strandat 937.530 kb on + strandat 937.537 kb on + strandat 937.537 kb on + strandat 937.537 kb on + strandat 937.537 kb on + strandat 937.537 kb on + strandat 937.542 kb on + strandat 937.545 kb on - strandat 937.623 kb on + strandat 937.647 kb on + strandat 937.655 kb on + strandat 937.655 kb on + strandat 937.663 kb on - strandat 937.724 kb on - strandat 937.739 kb on - strandat 937.762 kb on + strandat 937.772 kb on + strandat 937.921 kb on + strand, within PGA1_c09120at 937.929 kb on - strand, within PGA1_c09120at 937.963 kb on + strand, within PGA1_c09120at 937.981 kb on + strand, within PGA1_c09120at 938.067 kb on + strand, within PGA1_c09120at 938.139 kb on + strand, within PGA1_c09120at 938.145 kb on + strand, within PGA1_c09120at 938.145 kb on + strand, within PGA1_c09120at 938.165 kb on + strand, within PGA1_c09120at 938.190 kb on - strand, within PGA1_c09120at 938.241 kb on - strand, within PGA1_c09120at 938.262 kb on + strand, within PGA1_c09120at 938.343 kb on - strand, within PGA1_c09120at 938.356 kb on + strand, within PGA1_c09120at 938.419 kb on - strand, within PGA1_c09120at 938.467 kb on + strand, within PGA1_c09120at 938.564 kb on + strand, within PGA1_c09120at 938.839 kb on - strand, within PGA1_c09130at 938.839 kb on - strand, within PGA1_c09130at 938.901 kb on - strand, within PGA1_c09130at 938.997 kb on + strand, within PGA1_c09130at 938.997 kb on + strand, within PGA1_c09130at 938.997 kb on + strand, within PGA1_c09130at 938.997 kb on + strand, within PGA1_c09130at 938.997 kb on + strand, within PGA1_c09130at 939.005 kb on - strand, within PGA1_c09130at 939.005 kb on - strand, within PGA1_c09130at 939.005 kb on - strand, within PGA1_c09130at 939.081 kb on + strand, within PGA1_c09130at 939.084 kb on - strand, within PGA1_c09130at 939.207 kb on + strand, within PGA1_c09130at 939.207 kb on + strand, within PGA1_c09130at 939.207 kb on + strand, within PGA1_c09130at 939.233 kb on + strand, within PGA1_c09130at 939.323 kb on + strand, within PGA1_c09130at 939.353 kb on + strand, within PGA1_c09130at 939.357 kb on + strand, within PGA1_c09130at 939.365 kb on + strand, within PGA1_c09130at 939.401 kb on + strand, within PGA1_c09130at 939.412 kb on + strand, within PGA1_c09130at 939.430 kb on + strand, within PGA1_c09130at 939.476 kb on - strand, within PGA1_c09130at 939.493 kb on - strand, within PGA1_c09130at 939.528 kb on + strand, within PGA1_c09130at 939.533 kb on + strand, within PGA1_c09130at 939.541 kb on - strand, within PGA1_c09130at 939.604 kb on - strand, within PGA1_c09130at 939.634 kb on + strand, within PGA1_c09130at 939.646 kb on + strand, within PGA1_c09130at 939.661 kb on + strand, within PGA1_c09130at 939.696 kb on + strand, within PGA1_c09130at 939.696 kb on + strand, within PGA1_c09130at 939.696 kb on + strand, within PGA1_c09130at 939.696 kb on + strand, within PGA1_c09130at 939.696 kb on + strand, within PGA1_c09130at 939.704 kb on - strand, within PGA1_c09130at 939.719 kb on + strand, within PGA1_c09130

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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936,830 - PGA1_c09110 0.75 +0.1
936,904 + PGA1_c09110 0.79 +0.0
936,906 - PGA1_c09110 0.79 -3.2
936,912 - PGA1_c09110 0.79 +0.8
936,912 - PGA1_c09110 0.79 -1.0
936,913 + PGA1_c09110 0.79 -0.8
936,913 + PGA1_c09110 0.79 +0.6
936,921 - PGA1_c09110 0.80 +1.0
936,937 + PGA1_c09110 0.81 -0.4
937,010 - PGA1_c09110 0.85 +0.7
937,050 + PGA1_c09110 0.87 +0.0
937,079 - PGA1_c09110 0.89 -1.7
937,104 + PGA1_c09110 0.90 -0.4
937,130 - +2.6
937,130 - +0.5
937,132 + -0.6
937,147 - +0.1
937,161 + +0.1
937,168 - +0.0
937,233 + -0.1
937,292 - -0.4
937,294 + +0.0
937,301 + -0.8
937,361 + -0.4
937,369 - +0.0
937,382 + +0.2
937,425 + +0.6
937,450 + -0.8
937,458 - +0.3
937,524 - +0.4
937,524 - -1.1
937,530 + -0.4
937,530 + -0.2
937,537 + -1.9
937,537 + -0.6
937,537 + +0.6
937,537 + +1.0
937,537 + -1.2
937,542 + -0.7
937,545 - -0.2
937,623 + +1.0
937,647 + +0.9
937,655 + +1.5
937,655 + -0.1
937,663 - -2.4
937,724 - -0.8
937,739 - +1.0
937,762 + +0.5
937,772 + +0.5
937,921 + PGA1_c09120 0.18 -1.7
937,929 - PGA1_c09120 0.19 +0.0
937,963 + PGA1_c09120 0.22 -1.5
937,981 + PGA1_c09120 0.24 +0.1
938,067 + PGA1_c09120 0.33 -2.0
938,139 + PGA1_c09120 0.40 -0.4
938,145 + PGA1_c09120 0.41 +0.0
938,145 + PGA1_c09120 0.41 -1.5
938,165 + PGA1_c09120 0.43 +1.1
938,190 - PGA1_c09120 0.46 -3.3
938,241 - PGA1_c09120 0.51 +0.6
938,262 + PGA1_c09120 0.53 +2.0
938,343 - PGA1_c09120 0.61 -0.5
938,356 + PGA1_c09120 0.62 -0.4
938,419 - PGA1_c09120 0.69 -0.6
938,467 + PGA1_c09120 0.74 -3.3
938,564 + PGA1_c09120 0.84 +1.6
938,839 - PGA1_c09130 0.10 -0.7
938,839 - PGA1_c09130 0.10 +0.9
938,901 - PGA1_c09130 0.16 +0.6
938,997 + PGA1_c09130 0.24 -1.0
938,997 + PGA1_c09130 0.24 -0.4
938,997 + PGA1_c09130 0.24 -0.4
938,997 + PGA1_c09130 0.24 -0.0
938,997 + PGA1_c09130 0.24 -2.0
939,005 - PGA1_c09130 0.25 +0.6
939,005 - PGA1_c09130 0.25 -0.2
939,005 - PGA1_c09130 0.25 -1.5
939,081 + PGA1_c09130 0.31 +0.4
939,084 - PGA1_c09130 0.32 -0.4
939,207 + PGA1_c09130 0.43 +0.5
939,207 + PGA1_c09130 0.43 -0.0
939,207 + PGA1_c09130 0.43 +0.0
939,233 + PGA1_c09130 0.45 -2.8
939,323 + PGA1_c09130 0.53 +0.2
939,353 + PGA1_c09130 0.55 -0.4
939,357 + PGA1_c09130 0.56 -1.4
939,365 + PGA1_c09130 0.56 -0.4
939,401 + PGA1_c09130 0.60 -1.0
939,412 + PGA1_c09130 0.61 -2.0
939,430 + PGA1_c09130 0.62 -0.8
939,476 - PGA1_c09130 0.66 -0.5
939,493 - PGA1_c09130 0.68 +2.0
939,528 + PGA1_c09130 0.71 +0.3
939,533 + PGA1_c09130 0.71 +0.6
939,541 - PGA1_c09130 0.72 +1.2
939,604 - PGA1_c09130 0.77 -0.2
939,634 + PGA1_c09130 0.80 -0.2
939,646 + PGA1_c09130 0.81 -0.1
939,661 + PGA1_c09130 0.82 -0.7
939,696 + PGA1_c09130 0.85 -1.2
939,696 + PGA1_c09130 0.85 +2.0
939,696 + PGA1_c09130 0.85 +2.4
939,696 + PGA1_c09130 0.85 +0.2
939,696 + PGA1_c09130 0.85 -0.8
939,704 - PGA1_c09130 0.86 +0.2
939,719 + PGA1_c09130 0.87 -1.5

Or see this region's nucleotide sequence