Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08580 and PGA1_c08590 are separated by 94 nucleotides PGA1_c08590 and PGA1_c08600 overlap by 1 nucleotides PGA1_c08600 and PGA1_c08610 are separated by 261 nucleotides PGA1_c08610 and PGA1_c08620 are separated by 335 nucleotides PGA1_c08620 and PGA1_c08630 are separated by 144 nucleotides
PGA1_c08580: PGA1_c08580 - hypothetical protein, at 885,167 to 886,957
_c08580
PGA1_c08590: PGA1_c08590 - heme NO binding domain-containing protein, at 887,052 to 887,639
_c08590
PGA1_c08600: PGA1_c08600 - diguanylate cyclase (GGDEF) domain-containing protein, at 887,639 to 888,640
_c08600
PGA1_c08610: PGA1_c08610 - tRNA-Glu, at 888,902 to 888,976
_c08610
PGA1_c08620: PGA1_c08620 - tRNA-Glu, at 889,312 to 889,386
_c08620
PGA1_c08630: PGA1_c08630 - single-stranded-DNA-specific exonuclease RecJ, at 889,531 to 891,273
_c08630
Position (kb) 887
888
889 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 886.689 kb on + strand, within PGA1_c08580 at 886.697 kb on - strand, within PGA1_c08580 at 886.741 kb on - strand, within PGA1_c08580 at 886.748 kb on + strand, within PGA1_c08580 at 886.756 kb on - strand, within PGA1_c08580 at 886.756 kb on - strand, within PGA1_c08580 at 886.758 kb on + strand, within PGA1_c08580 at 886.758 kb on + strand, within PGA1_c08580 at 886.758 kb on + strand, within PGA1_c08580 at 886.775 kb on + strand, within PGA1_c08580 at 886.785 kb on + strand at 886.785 kb on + strand at 886.793 kb on + strand at 886.793 kb on - strand at 886.793 kb on - strand at 886.801 kb on - strand at 886.801 kb on - strand at 886.811 kb on - strand at 886.819 kb on + strand at 886.827 kb on - strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.887 kb on - strand at 886.897 kb on + strand at 886.917 kb on + strand at 886.932 kb on + strand at 886.932 kb on + strand at 886.932 kb on + strand at 886.932 kb on + strand at 886.940 kb on + strand at 886.940 kb on - strand at 886.940 kb on - strand at 886.945 kb on + strand at 886.947 kb on - strand at 886.950 kb on + strand at 886.951 kb on + strand at 886.953 kb on + strand at 886.953 kb on - strand at 886.959 kb on - strand at 886.966 kb on - strand at 887.010 kb on - strand at 887.010 kb on - strand at 887.025 kb on - strand at 887.032 kb on + strand at 887.049 kb on + strand at 887.052 kb on - strand at 887.057 kb on - strand at 887.063 kb on + strand at 887.076 kb on + strand at 887.131 kb on + strand, within PGA1_c08590 at 887.171 kb on + strand, within PGA1_c08590 at 887.179 kb on + strand, within PGA1_c08590 at 887.184 kb on - strand, within PGA1_c08590 at 887.217 kb on - strand, within PGA1_c08590 at 887.219 kb on - strand, within PGA1_c08590 at 887.219 kb on - strand, within PGA1_c08590 at 887.219 kb on - strand, within PGA1_c08590 at 887.293 kb on - strand, within PGA1_c08590 at 887.376 kb on - strand, within PGA1_c08590 at 887.388 kb on + strand, within PGA1_c08590 at 887.388 kb on + strand, within PGA1_c08590 at 887.396 kb on - strand, within PGA1_c08590 at 887.396 kb on - strand, within PGA1_c08590 at 887.396 kb on - strand, within PGA1_c08590 at 887.396 kb on - strand, within PGA1_c08590 at 887.466 kb on + strand, within PGA1_c08590 at 887.466 kb on + strand, within PGA1_c08590 at 887.489 kb on + strand, within PGA1_c08590 at 887.513 kb on - strand, within PGA1_c08590 at 887.552 kb on + strand, within PGA1_c08590 at 887.552 kb on + strand, within PGA1_c08590 at 887.555 kb on - strand, within PGA1_c08590 at 887.555 kb on - strand, within PGA1_c08590 at 887.557 kb on + strand, within PGA1_c08590 at 887.557 kb on + strand, within PGA1_c08590 at 887.557 kb on + strand, within PGA1_c08590 at 887.557 kb on + strand, within PGA1_c08590 at 887.557 kb on + strand, within PGA1_c08590 at 887.557 kb on + strand, within PGA1_c08590 at 887.560 kb on - strand, within PGA1_c08590 at 887.564 kb on + strand, within PGA1_c08590 at 887.565 kb on - strand, within PGA1_c08590 at 887.565 kb on - strand, within PGA1_c08590 at 887.565 kb on - strand, within PGA1_c08590 at 887.572 kb on - strand, within PGA1_c08590 at 887.578 kb on + strand, within PGA1_c08590 at 887.619 kb on - strand at 887.634 kb on + strand at 887.646 kb on - strand at 887.810 kb on + strand, within PGA1_c08600 at 887.814 kb on - strand, within PGA1_c08600 at 887.818 kb on - strand, within PGA1_c08600 at 887.836 kb on + strand, within PGA1_c08600 at 887.836 kb on + strand, within PGA1_c08600 at 887.836 kb on + strand, within PGA1_c08600 at 887.836 kb on + strand, within PGA1_c08600 at 887.844 kb on - strand, within PGA1_c08600 at 887.844 kb on - strand, within PGA1_c08600 at 887.844 kb on - strand, within PGA1_c08600 at 887.858 kb on - strand, within PGA1_c08600 at 887.923 kb on + strand, within PGA1_c08600 at 887.923 kb on + strand, within PGA1_c08600 at 887.931 kb on - strand, within PGA1_c08600 at 887.965 kb on + strand, within PGA1_c08600 at 887.973 kb on - strand, within PGA1_c08600 at 887.975 kb on + strand, within PGA1_c08600 at 887.990 kb on - strand, within PGA1_c08600 at 888.017 kb on + strand, within PGA1_c08600 at 888.017 kb on + strand, within PGA1_c08600 at 888.017 kb on + strand, within PGA1_c08600 at 888.017 kb on + strand, within PGA1_c08600 at 888.025 kb on - strand, within PGA1_c08600 at 888.080 kb on - strand, within PGA1_c08600 at 888.081 kb on + strand, within PGA1_c08600 at 888.081 kb on + strand, within PGA1_c08600 at 888.089 kb on - strand, within PGA1_c08600 at 888.127 kb on + strand, within PGA1_c08600 at 888.149 kb on + strand, within PGA1_c08600 at 888.149 kb on + strand, within PGA1_c08600 at 888.149 kb on + strand, within PGA1_c08600 at 888.149 kb on + strand, within PGA1_c08600 at 888.149 kb on + strand, within PGA1_c08600 at 888.157 kb on - strand, within PGA1_c08600 at 888.258 kb on - strand, within PGA1_c08600 at 888.288 kb on - strand, within PGA1_c08600 at 888.288 kb on - strand, within PGA1_c08600 at 888.306 kb on + strand, within PGA1_c08600 at 888.368 kb on + strand, within PGA1_c08600 at 888.521 kb on + strand, within PGA1_c08600 at 888.522 kb on + strand, within PGA1_c08600 at 888.536 kb on + strand, within PGA1_c08600 at 888.537 kb on + strand, within PGA1_c08600 at 888.592 kb on - strand at 888.635 kb on + strand at 888.636 kb on - strand at 888.677 kb on - strand at 888.695 kb on - strand at 888.723 kb on + strand at 888.723 kb on + strand at 888.723 kb on + strand at 888.723 kb on + strand at 888.731 kb on - strand at 888.769 kb on - strand at 888.769 kb on - strand at 888.843 kb on + strand at 888.843 kb on + strand at 888.851 kb on - strand at 888.857 kb on - strand at 888.885 kb on - strand at 888.893 kb on - strand at 888.893 kb on - strand at 889.183 kb on + strand at 889.183 kb on + strand at 889.490 kb on + strand at 889.491 kb on + strand at 889.506 kb on - strand at 889.527 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 886,689 + PGA1_c08580 0.85 -0.8 886,697 - PGA1_c08580 0.85 -0.0 886,741 - PGA1_c08580 0.88 -0.3 886,748 + PGA1_c08580 0.88 -0.4 886,756 - PGA1_c08580 0.89 -0.1 886,756 - PGA1_c08580 0.89 +0.2 886,758 + PGA1_c08580 0.89 -0.6 886,758 + PGA1_c08580 0.89 -1.4 886,758 + PGA1_c08580 0.89 -1.7 886,775 + PGA1_c08580 0.90 -0.6 886,785 + -0.3 886,785 + -0.3 886,793 + -0.9 886,793 - -0.0 886,793 - -0.2 886,801 - -0.7 886,801 - -0.4 886,811 - +0.4 886,819 + -1.8 886,827 - -0.3 886,852 + +0.6 886,852 + +0.5 886,852 + +0.3 886,852 + -0.1 886,852 + -2.2 886,852 + -0.4 886,852 + +1.4 886,852 + -1.0 886,852 + -2.2 886,852 + -0.5 886,852 + -0.0 886,860 - -0.2 886,860 - -0.2 886,860 - -0.6 886,860 - +1.8 886,860 - -0.3 886,860 - +0.9 886,860 - +0.6 886,860 - +0.0 886,860 - +0.6 886,887 - -0.8 886,897 + +0.2 886,917 + -0.1 886,932 + +1.4 886,932 + -1.1 886,932 + +0.6 886,932 + +0.3 886,940 + +0.1 886,940 - -2.0 886,940 - -2.3 886,945 + -1.4 886,947 - +1.4 886,950 + +0.0 886,951 + -0.3 886,953 + -2.0 886,953 - -1.2 886,959 - -0.9 886,966 - -1.1 887,010 - +0.1 887,010 - -0.1 887,025 - -1.7 887,032 + +1.1 887,049 + -2.4 887,052 - -2.0 887,057 - -0.1 887,063 + +1.9 887,076 + +2.5 887,131 + PGA1_c08590 0.13 +2.6 887,171 + PGA1_c08590 0.20 +2.1 887,179 + PGA1_c08590 0.22 -1.3 887,184 - PGA1_c08590 0.22 +0.6 887,217 - PGA1_c08590 0.28 +0.8 887,219 - PGA1_c08590 0.28 +0.5 887,219 - PGA1_c08590 0.28 +1.8 887,219 - PGA1_c08590 0.28 +1.8 887,293 - PGA1_c08590 0.41 +2.5 887,376 - PGA1_c08590 0.55 +1.2 887,388 + PGA1_c08590 0.57 +2.1 887,388 + PGA1_c08590 0.57 +0.7 887,396 - PGA1_c08590 0.59 +1.0 887,396 - PGA1_c08590 0.59 +1.0 887,396 - PGA1_c08590 0.59 +1.1 887,396 - PGA1_c08590 0.59 +1.7 887,466 + PGA1_c08590 0.70 +0.0 887,466 + PGA1_c08590 0.70 +1.4 887,489 + PGA1_c08590 0.74 +0.5 887,513 - PGA1_c08590 0.78 +2.2 887,552 + PGA1_c08590 0.85 +2.4 887,552 + PGA1_c08590 0.85 +1.6 887,555 - PGA1_c08590 0.86 +1.6 887,555 - PGA1_c08590 0.86 +0.7 887,557 + PGA1_c08590 0.86 +0.3 887,557 + PGA1_c08590 0.86 +1.3 887,557 + PGA1_c08590 0.86 +0.9 887,557 + PGA1_c08590 0.86 +1.0 887,557 + PGA1_c08590 0.86 +1.5 887,557 + PGA1_c08590 0.86 +0.4 887,560 - PGA1_c08590 0.86 -1.1 887,564 + PGA1_c08590 0.87 +0.3 887,565 - PGA1_c08590 0.87 +1.5 887,565 - PGA1_c08590 0.87 +1.2 887,565 - PGA1_c08590 0.87 +0.5 887,572 - PGA1_c08590 0.88 +4.5 887,578 + PGA1_c08590 0.89 +2.1 887,619 - -1.0 887,634 + +0.6 887,646 - +2.0 887,810 + PGA1_c08600 0.17 +0.7 887,814 - PGA1_c08600 0.17 +1.8 887,818 - PGA1_c08600 0.18 +1.4 887,836 + PGA1_c08600 0.20 +0.6 887,836 + PGA1_c08600 0.20 +1.8 887,836 + PGA1_c08600 0.20 +1.0 887,836 + PGA1_c08600 0.20 +1.4 887,844 - PGA1_c08600 0.20 +0.2 887,844 - PGA1_c08600 0.20 +1.0 887,844 - PGA1_c08600 0.20 +1.3 887,858 - PGA1_c08600 0.22 +0.8 887,923 + PGA1_c08600 0.28 -0.5 887,923 + PGA1_c08600 0.28 +1.4 887,931 - PGA1_c08600 0.29 +0.6 887,965 + PGA1_c08600 0.33 +1.5 887,973 - PGA1_c08600 0.33 +1.3 887,975 + PGA1_c08600 0.34 +1.4 887,990 - PGA1_c08600 0.35 +1.1 888,017 + PGA1_c08600 0.38 +1.0 888,017 + PGA1_c08600 0.38 +1.0 888,017 + PGA1_c08600 0.38 +1.2 888,017 + PGA1_c08600 0.38 +2.1 888,025 - PGA1_c08600 0.39 +1.5 888,080 - PGA1_c08600 0.44 +0.8 888,081 + PGA1_c08600 0.44 +0.9 888,081 + PGA1_c08600 0.44 +1.5 888,089 - PGA1_c08600 0.45 +1.6 888,127 + PGA1_c08600 0.49 +1.0 888,149 + PGA1_c08600 0.51 +1.4 888,149 + PGA1_c08600 0.51 +0.7 888,149 + PGA1_c08600 0.51 +0.4 888,149 + PGA1_c08600 0.51 +1.9 888,149 + PGA1_c08600 0.51 +1.1 888,157 - PGA1_c08600 0.52 +1.0 888,258 - PGA1_c08600 0.62 +0.0 888,288 - PGA1_c08600 0.65 +0.8 888,288 - PGA1_c08600 0.65 +0.1 888,306 + PGA1_c08600 0.67 +1.6 888,368 + PGA1_c08600 0.73 +1.3 888,521 + PGA1_c08600 0.88 +0.8 888,522 + PGA1_c08600 0.88 +1.2 888,536 + PGA1_c08600 0.90 +2.5 888,537 + PGA1_c08600 0.90 +0.8 888,592 - +3.2 888,635 + -0.1 888,636 - +1.8 888,677 - -0.8 888,695 - -0.3 888,723 + -1.5 888,723 + -1.1 888,723 + -0.2 888,723 + +0.4 888,731 - -2.0 888,769 - -1.2 888,769 - -1.3 888,843 + +0.6 888,843 + -2.4 888,851 - -0.4 888,857 - -0.1 888,885 - -2.5 888,893 - +0.3 888,893 - -0.2 889,183 + +0.2 889,183 + -1.0 889,490 + +0.1 889,491 + +0.2 889,506 - -0.8 889,527 + -0.2
Or see this region's nucleotide sequence