Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08480 and PGA1_c08490 are separated by 27 nucleotides PGA1_c08490 and PGA1_c08500 are separated by 235 nucleotides PGA1_c08500 and PGA1_c08510 are separated by 13 nucleotides PGA1_c08510 and PGA1_c08520 overlap by 8 nucleotides
PGA1_c08480: PGA1_c08480 - NUDIX hydrolase-like protein, at 876,705 to 877,472
_c08480
PGA1_c08490: PGA1_c08490 - Uncharacterized protein conserved in bacteria, at 877,500 to 877,916
_c08490
PGA1_c08500: PGA1_c08500 - hypothetical protein, at 878,152 to 878,655
_c08500
PGA1_c08510: PGA1_c08510 - RNA polymerase sigma factor (ECF01 subgroup, ECF20 subgroup), at 878,669 to 879,328
_c08510
PGA1_c08520: PGA1_c08520 - hypothetical protein, at 879,321 to 879,797
_c08520
Position (kb) 878
879 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 877.170 kb on + strand, within PGA1_c08480 at 877.233 kb on - strand, within PGA1_c08480 at 877.423 kb on + strand at 877.558 kb on + strand, within PGA1_c08490 at 877.558 kb on + strand, within PGA1_c08490 at 877.558 kb on + strand, within PGA1_c08490 at 877.558 kb on + strand, within PGA1_c08490 at 877.657 kb on + strand, within PGA1_c08490 at 877.713 kb on + strand, within PGA1_c08490 at 877.963 kb on + strand at 877.983 kb on + strand at 877.986 kb on - strand at 878.012 kb on - strand at 878.021 kb on + strand at 878.029 kb on + strand at 878.083 kb on + strand at 878.267 kb on + strand, within PGA1_c08500 at 878.329 kb on + strand, within PGA1_c08500 at 878.401 kb on + strand, within PGA1_c08500 at 878.401 kb on + strand, within PGA1_c08500 at 878.404 kb on - strand, within PGA1_c08500 at 878.409 kb on - strand, within PGA1_c08500 at 878.474 kb on + strand, within PGA1_c08500 at 878.512 kb on + strand, within PGA1_c08500 at 878.520 kb on - strand, within PGA1_c08500 at 878.553 kb on - strand, within PGA1_c08500 at 878.606 kb on + strand at 878.621 kb on + strand at 878.719 kb on - strand at 878.736 kb on - strand, within PGA1_c08510 at 878.759 kb on + strand, within PGA1_c08510 at 879.305 kb on + strand at 879.560 kb on + strand, within PGA1_c08520
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 877,170 + PGA1_c08480 0.61 +2.0 877,233 - PGA1_c08480 0.69 -1.4 877,423 + -1.0 877,558 + PGA1_c08490 0.14 +0.8 877,558 + PGA1_c08490 0.14 -1.9 877,558 + PGA1_c08490 0.14 -0.5 877,558 + PGA1_c08490 0.14 -0.1 877,657 + PGA1_c08490 0.38 +0.0 877,713 + PGA1_c08490 0.51 -0.4 877,963 + -0.2 877,983 + -0.2 877,986 - -1.3 878,012 - -0.8 878,021 + -1.0 878,029 + -0.7 878,083 + -0.7 878,267 + PGA1_c08500 0.23 -2.8 878,329 + PGA1_c08500 0.35 +0.1 878,401 + PGA1_c08500 0.49 -2.8 878,401 + PGA1_c08500 0.49 -1.4 878,404 - PGA1_c08500 0.50 -2.4 878,409 - PGA1_c08500 0.51 -0.6 878,474 + PGA1_c08500 0.64 -1.4 878,512 + PGA1_c08500 0.71 +0.8 878,520 - PGA1_c08500 0.73 -1.0 878,553 - PGA1_c08500 0.80 -0.1 878,606 + -0.0 878,621 + +1.0 878,719 - -0.3 878,736 - PGA1_c08510 0.10 -0.2 878,759 + PGA1_c08510 0.14 +0.4 879,305 + -0.8 879,560 + PGA1_c08520 0.50 +0.6
Or see this region's nucleotide sequence