Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07880

Experiment: m.b. A22 0.02 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c07870 and PGA1_c07880 are separated by 10 nucleotidesPGA1_c07880 and PGA1_c07890 are separated by 65 nucleotides PGA1_c07870: PGA1_c07870 - alpha-glucoside transport system permease protein AglF, at 815,777 to 816,784 _c07870 PGA1_c07880: PGA1_c07880 - alpha-glucoside transport system permease protein AglG, at 816,795 to 817,943 _c07880 PGA1_c07890: PGA1_c07890 - cytoplasmic trehalase (AlgA) (from data), at 818,009 to 819,667 _c07890 Position (kb) 816 817 818Strain fitness (log2 ratio) -1 0 1 2 3 4at 815.798 kb on - strandat 815.800 kb on + strandat 815.819 kb on - strandat 815.867 kb on - strandat 815.930 kb on - strand, within PGA1_c07870at 815.964 kb on + strand, within PGA1_c07870at 815.988 kb on - strand, within PGA1_c07870at 815.993 kb on - strand, within PGA1_c07870at 816.025 kb on + strand, within PGA1_c07870at 816.033 kb on - strand, within PGA1_c07870at 816.153 kb on + strand, within PGA1_c07870at 816.161 kb on - strand, within PGA1_c07870at 816.168 kb on + strand, within PGA1_c07870at 816.168 kb on + strand, within PGA1_c07870at 816.176 kb on - strand, within PGA1_c07870at 816.311 kb on + strand, within PGA1_c07870at 816.356 kb on - strand, within PGA1_c07870at 816.401 kb on + strand, within PGA1_c07870at 816.431 kb on - strand, within PGA1_c07870at 816.452 kb on - strand, within PGA1_c07870at 816.452 kb on - strand, within PGA1_c07870at 816.499 kb on + strand, within PGA1_c07870at 816.579 kb on + strand, within PGA1_c07870at 816.580 kb on - strand, within PGA1_c07870at 816.614 kb on + strand, within PGA1_c07870at 816.619 kb on + strand, within PGA1_c07870at 816.641 kb on - strand, within PGA1_c07870at 816.644 kb on + strand, within PGA1_c07870at 816.651 kb on - strand, within PGA1_c07870at 816.651 kb on - strand, within PGA1_c07870at 816.652 kb on - strand, within PGA1_c07870at 816.753 kb on - strandat 816.778 kb on + strandat 816.778 kb on + strandat 816.827 kb on + strandat 816.827 kb on + strandat 816.827 kb on + strandat 816.827 kb on + strandat 816.827 kb on + strandat 816.827 kb on + strandat 816.827 kb on + strandat 816.827 kb on + strandat 816.834 kb on + strandat 816.835 kb on - strandat 816.835 kb on - strandat 816.835 kb on - strandat 816.855 kb on - strandat 816.865 kb on - strandat 816.913 kb on + strand, within PGA1_c07880at 816.913 kb on + strand, within PGA1_c07880at 816.913 kb on + strand, within PGA1_c07880at 816.921 kb on - strand, within PGA1_c07880at 816.953 kb on + strand, within PGA1_c07880at 816.970 kb on + strand, within PGA1_c07880at 816.997 kb on + strand, within PGA1_c07880at 817.002 kb on + strand, within PGA1_c07880at 817.005 kb on - strand, within PGA1_c07880at 817.005 kb on - strand, within PGA1_c07880at 817.082 kb on - strand, within PGA1_c07880at 817.121 kb on - strand, within PGA1_c07880at 817.123 kb on + strand, within PGA1_c07880at 817.123 kb on + strand, within PGA1_c07880at 817.123 kb on + strand, within PGA1_c07880at 817.131 kb on - strand, within PGA1_c07880at 817.131 kb on - strand, within PGA1_c07880at 817.213 kb on + strand, within PGA1_c07880at 817.213 kb on + strand, within PGA1_c07880at 817.213 kb on + strand, within PGA1_c07880at 817.213 kb on + strand, within PGA1_c07880at 817.273 kb on - strand, within PGA1_c07880at 817.301 kb on + strand, within PGA1_c07880at 817.422 kb on + strand, within PGA1_c07880at 817.445 kb on - strand, within PGA1_c07880at 817.451 kb on + strand, within PGA1_c07880at 817.520 kb on - strand, within PGA1_c07880at 817.525 kb on - strand, within PGA1_c07880at 817.525 kb on - strand, within PGA1_c07880at 817.526 kb on - strand, within PGA1_c07880at 817.697 kb on - strand, within PGA1_c07880at 817.752 kb on + strand, within PGA1_c07880at 817.754 kb on - strand, within PGA1_c07880at 817.785 kb on + strand, within PGA1_c07880at 817.848 kb on + strandat 817.848 kb on + strandat 817.955 kb on + strandat 817.963 kb on - strandat 817.968 kb on - strandat 817.973 kb on - strandat 817.973 kb on - strandat 817.985 kb on - strandat 818.103 kb on + strandat 818.111 kb on - strandat 818.151 kb on + strandat 818.236 kb on - strand, within PGA1_c07890at 818.319 kb on + strand, within PGA1_c07890at 818.325 kb on - strand, within PGA1_c07890at 818.361 kb on + strand, within PGA1_c07890at 818.361 kb on + strand, within PGA1_c07890at 818.361 kb on + strand, within PGA1_c07890at 818.361 kb on + strand, within PGA1_c07890at 818.361 kb on + strand, within PGA1_c07890at 818.366 kb on + strand, within PGA1_c07890at 818.369 kb on - strand, within PGA1_c07890at 818.369 kb on - strand, within PGA1_c07890at 818.369 kb on - strand, within PGA1_c07890at 818.369 kb on - strand, within PGA1_c07890at 818.369 kb on - strand, within PGA1_c07890at 818.369 kb on - strand, within PGA1_c07890at 818.369 kb on - strand, within PGA1_c07890at 818.384 kb on + strand, within PGA1_c07890at 818.401 kb on - strand, within PGA1_c07890at 818.428 kb on + strand, within PGA1_c07890at 818.428 kb on + strand, within PGA1_c07890at 818.433 kb on + strand, within PGA1_c07890at 818.436 kb on - strand, within PGA1_c07890at 818.436 kb on - strand, within PGA1_c07890at 818.436 kb on - strand, within PGA1_c07890at 818.436 kb on - strand, within PGA1_c07890at 818.524 kb on + strand, within PGA1_c07890at 818.531 kb on - strand, within PGA1_c07890at 818.544 kb on - strand, within PGA1_c07890at 818.566 kb on - strand, within PGA1_c07890at 818.577 kb on - strand, within PGA1_c07890at 818.628 kb on + strand, within PGA1_c07890at 818.637 kb on + strand, within PGA1_c07890at 818.656 kb on - strand, within PGA1_c07890at 818.673 kb on + strand, within PGA1_c07890

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
remove
815,798 - +1.1
815,800 + -0.4
815,819 - +1.4
815,867 - +3.8
815,930 - PGA1_c07870 0.15 +2.3
815,964 + PGA1_c07870 0.19 +1.4
815,988 - PGA1_c07870 0.21 +0.7
815,993 - PGA1_c07870 0.21 +1.5
816,025 + PGA1_c07870 0.25 +1.1
816,033 - PGA1_c07870 0.25 -0.2
816,153 + PGA1_c07870 0.37 +1.1
816,161 - PGA1_c07870 0.38 +1.4
816,168 + PGA1_c07870 0.39 +1.7
816,168 + PGA1_c07870 0.39 +1.9
816,176 - PGA1_c07870 0.40 +1.3
816,311 + PGA1_c07870 0.53 +2.0
816,356 - PGA1_c07870 0.57 +0.4
816,401 + PGA1_c07870 0.62 +1.7
816,431 - PGA1_c07870 0.65 +2.3
816,452 - PGA1_c07870 0.67 +1.8
816,452 - PGA1_c07870 0.67 +1.6
816,499 + PGA1_c07870 0.72 +1.4
816,579 + PGA1_c07870 0.80 +1.6
816,580 - PGA1_c07870 0.80 +1.3
816,614 + PGA1_c07870 0.83 +1.1
816,619 + PGA1_c07870 0.84 +3.1
816,641 - PGA1_c07870 0.86 +0.8
816,644 + PGA1_c07870 0.86 -1.6
816,651 - PGA1_c07870 0.87 +0.6
816,651 - PGA1_c07870 0.87 +1.8
816,652 - PGA1_c07870 0.87 +1.7
816,753 - +0.8
816,778 + +0.9
816,778 + -0.3
816,827 + +3.3
816,827 + +2.4
816,827 + +2.6
816,827 + +1.9
816,827 + +0.7
816,827 + +0.3
816,827 + +0.7
816,827 + +0.4
816,834 + +1.7
816,835 - +1.6
816,835 - +0.6
816,835 - +0.6
816,855 - +2.0
816,865 - +1.6
816,913 + PGA1_c07880 0.10 -0.2
816,913 + PGA1_c07880 0.10 +1.7
816,913 + PGA1_c07880 0.10 +1.0
816,921 - PGA1_c07880 0.11 +1.3
816,953 + PGA1_c07880 0.14 +2.6
816,970 + PGA1_c07880 0.15 +1.4
816,997 + PGA1_c07880 0.18 +1.7
817,002 + PGA1_c07880 0.18 +2.1
817,005 - PGA1_c07880 0.18 +1.7
817,005 - PGA1_c07880 0.18 +2.1
817,082 - PGA1_c07880 0.25 -1.2
817,121 - PGA1_c07880 0.28 +0.3
817,123 + PGA1_c07880 0.29 +2.0
817,123 + PGA1_c07880 0.29 +1.4
817,123 + PGA1_c07880 0.29 -1.2
817,131 - PGA1_c07880 0.29 +1.2
817,131 - PGA1_c07880 0.29 +1.5
817,213 + PGA1_c07880 0.36 +0.3
817,213 + PGA1_c07880 0.36 +0.8
817,213 + PGA1_c07880 0.36 +2.0
817,213 + PGA1_c07880 0.36 +2.1
817,273 - PGA1_c07880 0.42 -0.5
817,301 + PGA1_c07880 0.44 +3.1
817,422 + PGA1_c07880 0.55 +2.2
817,445 - PGA1_c07880 0.57 +2.9
817,451 + PGA1_c07880 0.57 +1.6
817,520 - PGA1_c07880 0.63 -0.8
817,525 - PGA1_c07880 0.64 -0.6
817,525 - PGA1_c07880 0.64 +1.4
817,526 - PGA1_c07880 0.64 -0.4
817,697 - PGA1_c07880 0.79 +2.6
817,752 + PGA1_c07880 0.83 +3.0
817,754 - PGA1_c07880 0.83 +1.8
817,785 + PGA1_c07880 0.86 +0.4
817,848 + +1.6
817,848 + +2.2
817,955 + +1.1
817,963 - -0.1
817,968 - +1.6
817,973 - +2.2
817,973 - +1.4
817,985 - +1.8
818,103 + +1.5
818,111 - +1.5
818,151 + +2.0
818,236 - PGA1_c07890 0.14 +0.4
818,319 + PGA1_c07890 0.19 +1.7
818,325 - PGA1_c07890 0.19 -1.0
818,361 + PGA1_c07890 0.21 +2.4
818,361 + PGA1_c07890 0.21 +1.0
818,361 + PGA1_c07890 0.21 +2.8
818,361 + PGA1_c07890 0.21 +0.1
818,361 + PGA1_c07890 0.21 +0.8
818,366 + PGA1_c07890 0.22 +0.6
818,369 - PGA1_c07890 0.22 +1.8
818,369 - PGA1_c07890 0.22 +1.1
818,369 - PGA1_c07890 0.22 -0.0
818,369 - PGA1_c07890 0.22 +1.9
818,369 - PGA1_c07890 0.22 +0.5
818,369 - PGA1_c07890 0.22 +1.7
818,369 - PGA1_c07890 0.22 +1.3
818,384 + PGA1_c07890 0.23 +0.8
818,401 - PGA1_c07890 0.24 +1.5
818,428 + PGA1_c07890 0.25 +2.0
818,428 + PGA1_c07890 0.25 +1.7
818,433 + PGA1_c07890 0.26 +1.8
818,436 - PGA1_c07890 0.26 +0.8
818,436 - PGA1_c07890 0.26 +0.7
818,436 - PGA1_c07890 0.26 +1.3
818,436 - PGA1_c07890 0.26 +1.6
818,524 + PGA1_c07890 0.31 +0.6
818,531 - PGA1_c07890 0.31 +0.6
818,544 - PGA1_c07890 0.32 +2.2
818,566 - PGA1_c07890 0.34 +0.8
818,577 - PGA1_c07890 0.34 +0.8
818,628 + PGA1_c07890 0.37 +1.3
818,637 + PGA1_c07890 0.38 +2.1
818,656 - PGA1_c07890 0.39 +1.5
818,673 + PGA1_c07890 0.40 +1.4

Or see this region's nucleotide sequence