Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06560

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06550 and PGA1_c06560 are separated by 82 nucleotidesPGA1_c06560 and PGA1_c06570 are separated by 87 nucleotides PGA1_c06550: PGA1_c06550 - phosphoglucosamine mutase GlmM, at 673,034 to 674,380 _c06550 PGA1_c06560: PGA1_c06560 - Permeases of the drug/metabolite transporter (DMT) superfamily, at 674,463 to 675,371 _c06560 PGA1_c06570: PGA1_c06570 - putative integral membrane protein, at 675,459 to 676,373 _c06570 Position (kb) 674 675 676Strain fitness (log2 ratio) -3 -2 -1 0 1at 674.415 kb on - strandat 674.430 kb on - strandat 674.476 kb on + strandat 674.645 kb on - strand, within PGA1_c06560at 674.647 kb on + strand, within PGA1_c06560at 674.647 kb on + strand, within PGA1_c06560at 674.663 kb on - strand, within PGA1_c06560at 674.689 kb on + strand, within PGA1_c06560at 674.697 kb on - strand, within PGA1_c06560at 674.708 kb on - strand, within PGA1_c06560at 674.721 kb on - strand, within PGA1_c06560at 674.731 kb on - strand, within PGA1_c06560at 674.860 kb on - strand, within PGA1_c06560at 674.882 kb on + strand, within PGA1_c06560at 674.915 kb on - strand, within PGA1_c06560at 674.915 kb on - strand, within PGA1_c06560at 674.941 kb on + strand, within PGA1_c06560at 675.021 kb on + strand, within PGA1_c06560at 675.027 kb on - strand, within PGA1_c06560at 675.028 kb on - strand, within PGA1_c06560at 675.117 kb on - strand, within PGA1_c06560at 675.134 kb on - strand, within PGA1_c06560at 675.134 kb on - strand, within PGA1_c06560at 675.182 kb on - strand, within PGA1_c06560at 675.191 kb on + strand, within PGA1_c06560at 675.212 kb on + strand, within PGA1_c06560at 675.212 kb on + strand, within PGA1_c06560at 675.220 kb on - strand, within PGA1_c06560at 675.222 kb on + strand, within PGA1_c06560at 675.230 kb on - strand, within PGA1_c06560at 675.230 kb on - strand, within PGA1_c06560at 675.267 kb on - strand, within PGA1_c06560at 675.269 kb on + strand, within PGA1_c06560at 675.269 kb on + strand, within PGA1_c06560at 675.277 kb on - strand, within PGA1_c06560at 675.279 kb on + strand, within PGA1_c06560at 675.349 kb on - strandat 675.548 kb on + strandat 675.621 kb on + strand, within PGA1_c06570at 675.626 kb on + strand, within PGA1_c06570at 675.629 kb on - strand, within PGA1_c06570at 675.670 kb on - strand, within PGA1_c06570at 675.733 kb on - strand, within PGA1_c06570at 675.775 kb on + strand, within PGA1_c06570at 675.796 kb on + strand, within PGA1_c06570at 675.836 kb on + strand, within PGA1_c06570at 675.850 kb on + strand, within PGA1_c06570at 675.850 kb on + strand, within PGA1_c06570at 675.850 kb on + strand, within PGA1_c06570at 675.850 kb on + strand, within PGA1_c06570at 675.855 kb on + strand, within PGA1_c06570at 675.858 kb on - strand, within PGA1_c06570at 675.858 kb on - strand, within PGA1_c06570at 675.863 kb on - strand, within PGA1_c06570at 675.863 kb on - strand, within PGA1_c06570at 675.988 kb on + strand, within PGA1_c06570at 675.996 kb on - strand, within PGA1_c06570at 676.083 kb on + strand, within PGA1_c06570at 676.088 kb on + strand, within PGA1_c06570at 676.088 kb on + strand, within PGA1_c06570at 676.088 kb on + strand, within PGA1_c06570at 676.088 kb on + strand, within PGA1_c06570at 676.091 kb on - strand, within PGA1_c06570at 676.096 kb on - strand, within PGA1_c06570at 676.113 kb on - strand, within PGA1_c06570at 676.157 kb on - strand, within PGA1_c06570at 676.179 kb on - strand, within PGA1_c06570at 676.207 kb on - strand, within PGA1_c06570at 676.227 kb on - strand, within PGA1_c06570at 676.276 kb on + strand, within PGA1_c06570at 676.317 kb on + strandat 676.324 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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674,415 - +0.6
674,430 - +0.5
674,476 + +0.6
674,645 - PGA1_c06560 0.20 +0.6
674,647 + PGA1_c06560 0.20 -0.0
674,647 + PGA1_c06560 0.20 -1.7
674,663 - PGA1_c06560 0.22 -1.7
674,689 + PGA1_c06560 0.25 +0.0
674,697 - PGA1_c06560 0.26 -0.1
674,708 - PGA1_c06560 0.27 +0.9
674,721 - PGA1_c06560 0.28 +0.1
674,731 - PGA1_c06560 0.29 -0.5
674,860 - PGA1_c06560 0.44 -0.9
674,882 + PGA1_c06560 0.46 -0.7
674,915 - PGA1_c06560 0.50 -1.3
674,915 - PGA1_c06560 0.50 -0.4
674,941 + PGA1_c06560 0.53 -0.4
675,021 + PGA1_c06560 0.61 +0.2
675,027 - PGA1_c06560 0.62 +0.3
675,028 - PGA1_c06560 0.62 +0.3
675,117 - PGA1_c06560 0.72 +0.2
675,134 - PGA1_c06560 0.74 -0.1
675,134 - PGA1_c06560 0.74 -1.2
675,182 - PGA1_c06560 0.79 -0.1
675,191 + PGA1_c06560 0.80 -2.9
675,212 + PGA1_c06560 0.82 +0.2
675,212 + PGA1_c06560 0.82 +0.2
675,220 - PGA1_c06560 0.83 -0.1
675,222 + PGA1_c06560 0.83 +0.9
675,230 - PGA1_c06560 0.84 +0.0
675,230 - PGA1_c06560 0.84 +0.4
675,267 - PGA1_c06560 0.88 -1.5
675,269 + PGA1_c06560 0.89 -0.3
675,269 + PGA1_c06560 0.89 -0.2
675,277 - PGA1_c06560 0.90 -0.2
675,279 + PGA1_c06560 0.90 +0.2
675,349 - +0.2
675,548 + -0.7
675,621 + PGA1_c06570 0.18 -0.9
675,626 + PGA1_c06570 0.18 +0.3
675,629 - PGA1_c06570 0.19 +0.2
675,670 - PGA1_c06570 0.23 +0.9
675,733 - PGA1_c06570 0.30 +0.1
675,775 + PGA1_c06570 0.35 +0.4
675,796 + PGA1_c06570 0.37 -1.1
675,836 + PGA1_c06570 0.41 +0.0
675,850 + PGA1_c06570 0.43 -1.1
675,850 + PGA1_c06570 0.43 -0.5
675,850 + PGA1_c06570 0.43 -0.2
675,850 + PGA1_c06570 0.43 +0.1
675,855 + PGA1_c06570 0.43 -2.0
675,858 - PGA1_c06570 0.44 -1.4
675,858 - PGA1_c06570 0.44 -0.2
675,863 - PGA1_c06570 0.44 -1.2
675,863 - PGA1_c06570 0.44 -2.1
675,988 + PGA1_c06570 0.58 -3.2
675,996 - PGA1_c06570 0.59 -0.1
676,083 + PGA1_c06570 0.68 -0.6
676,088 + PGA1_c06570 0.69 -0.3
676,088 + PGA1_c06570 0.69 +0.2
676,088 + PGA1_c06570 0.69 -0.4
676,088 + PGA1_c06570 0.69 -1.0
676,091 - PGA1_c06570 0.69 -0.1
676,096 - PGA1_c06570 0.70 -0.3
676,113 - PGA1_c06570 0.71 -1.0
676,157 - PGA1_c06570 0.76 -0.2
676,179 - PGA1_c06570 0.79 +0.1
676,207 - PGA1_c06570 0.82 +1.7
676,227 - PGA1_c06570 0.84 -0.2
676,276 + PGA1_c06570 0.89 +1.2
676,317 + -0.3
676,324 - -0.6

Or see this region's nucleotide sequence