Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06010 and PGA1_c06020 are separated by 99 nucleotides PGA1_c06020 and PGA1_c06030 are separated by 85 nucleotides PGA1_c06030 and PGA1_c06040 are separated by 52 nucleotides
PGA1_c06010: PGA1_c06010 - bifunctional protein FolD, at 614,620 to 615,522
_c06010
PGA1_c06020: PGA1_c06020 - thioesterase domain-containing protein, at 615,622 to 616,032
_c06020
PGA1_c06030: PGA1_c06030 - DNA repair nuclease, ligase-associated (TIGR04123) (from data) , at 616,118 to 616,792
_c06030
PGA1_c06040: PGA1_c06040 - DNA damage response helicase, ligase-associated (from data) , at 616,845 to 619,280
_c06040
Position (kb)
615
616
617 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 615.491 kb on + strand at 615.605 kb on - strand at 615.627 kb on - strand at 615.728 kb on + strand, within PGA1_c06020 at 615.811 kb on - strand, within PGA1_c06020 at 615.850 kb on - strand, within PGA1_c06020 at 615.916 kb on + strand, within PGA1_c06020 at 616.061 kb on - strand at 616.144 kb on - strand at 616.162 kb on + strand at 616.181 kb on + strand at 616.250 kb on - strand, within PGA1_c06030 at 616.303 kb on + strand, within PGA1_c06030 at 616.310 kb on - strand, within PGA1_c06030 at 616.310 kb on - strand, within PGA1_c06030 at 616.310 kb on - strand, within PGA1_c06030 at 616.420 kb on - strand, within PGA1_c06030 at 616.448 kb on + strand, within PGA1_c06030 at 616.485 kb on + strand, within PGA1_c06030 at 616.490 kb on - strand, within PGA1_c06030 at 616.667 kb on - strand, within PGA1_c06030 at 616.728 kb on - strand at 616.728 kb on - strand at 616.757 kb on - strand at 616.765 kb on - strand at 616.787 kb on + strand at 616.795 kb on - strand at 616.904 kb on - strand at 617.014 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 615,491 + -0.7 615,605 - +0.2 615,627 - -1.0 615,728 + PGA1_c06020 0.26 +0.3 615,811 - PGA1_c06020 0.46 +2.0 615,850 - PGA1_c06020 0.55 +0.8 615,916 + PGA1_c06020 0.72 +1.6 616,061 - +0.3 616,144 - -1.8 616,162 + +0.6 616,181 + -0.4 616,250 - PGA1_c06030 0.20 +0.8 616,303 + PGA1_c06030 0.27 -0.4 616,310 - PGA1_c06030 0.28 -2.2 616,310 - PGA1_c06030 0.28 +1.6 616,310 - PGA1_c06030 0.28 +0.6 616,420 - PGA1_c06030 0.45 -0.6 616,448 + PGA1_c06030 0.49 -0.7 616,485 + PGA1_c06030 0.54 -1.7 616,490 - PGA1_c06030 0.55 +0.6 616,667 - PGA1_c06030 0.81 -1.0 616,728 - -1.5 616,728 - +0.0 616,757 - +1.3 616,765 - +1.2 616,787 + -0.1 616,795 - +1.4 616,904 - +1.2 617,014 + -0.4
Or see this region's nucleotide sequence