Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06020

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06010 and PGA1_c06020 are separated by 99 nucleotidesPGA1_c06020 and PGA1_c06030 are separated by 85 nucleotidesPGA1_c06030 and PGA1_c06040 are separated by 52 nucleotides PGA1_c06010: PGA1_c06010 - bifunctional protein FolD, at 614,620 to 615,522 _c06010 PGA1_c06020: PGA1_c06020 - thioesterase domain-containing protein, at 615,622 to 616,032 _c06020 PGA1_c06030: PGA1_c06030 - DNA repair nuclease, ligase-associated (TIGR04123) (from data), at 616,118 to 616,792 _c06030 PGA1_c06040: PGA1_c06040 - DNA damage response helicase, ligase-associated (from data), at 616,845 to 619,280 _c06040 Position (kb) 615 616 617Strain fitness (log2 ratio) -2 -1 0 1 2at 615.491 kb on + strandat 615.605 kb on - strandat 615.627 kb on - strandat 615.728 kb on + strand, within PGA1_c06020at 615.811 kb on - strand, within PGA1_c06020at 615.850 kb on - strand, within PGA1_c06020at 615.916 kb on + strand, within PGA1_c06020at 616.061 kb on - strandat 616.144 kb on - strandat 616.162 kb on + strandat 616.181 kb on + strandat 616.250 kb on - strand, within PGA1_c06030at 616.303 kb on + strand, within PGA1_c06030at 616.310 kb on - strand, within PGA1_c06030at 616.310 kb on - strand, within PGA1_c06030at 616.310 kb on - strand, within PGA1_c06030at 616.420 kb on - strand, within PGA1_c06030at 616.448 kb on + strand, within PGA1_c06030at 616.485 kb on + strand, within PGA1_c06030at 616.490 kb on - strand, within PGA1_c06030at 616.667 kb on - strand, within PGA1_c06030at 616.728 kb on - strandat 616.728 kb on - strandat 616.757 kb on - strandat 616.765 kb on - strandat 616.787 kb on + strandat 616.795 kb on - strandat 616.904 kb on - strandat 617.014 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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615,491 + -0.7
615,605 - +0.2
615,627 - -1.0
615,728 + PGA1_c06020 0.26 +0.3
615,811 - PGA1_c06020 0.46 +2.0
615,850 - PGA1_c06020 0.55 +0.8
615,916 + PGA1_c06020 0.72 +1.6
616,061 - +0.3
616,144 - -1.8
616,162 + +0.6
616,181 + -0.4
616,250 - PGA1_c06030 0.20 +0.8
616,303 + PGA1_c06030 0.27 -0.4
616,310 - PGA1_c06030 0.28 -2.2
616,310 - PGA1_c06030 0.28 +1.6
616,310 - PGA1_c06030 0.28 +0.6
616,420 - PGA1_c06030 0.45 -0.6
616,448 + PGA1_c06030 0.49 -0.7
616,485 + PGA1_c06030 0.54 -1.7
616,490 - PGA1_c06030 0.55 +0.6
616,667 - PGA1_c06030 0.81 -1.0
616,728 - -1.5
616,728 - +0.0
616,757 - +1.3
616,765 - +1.2
616,787 + -0.1
616,795 - +1.4
616,904 - +1.2
617,014 + -0.4

Or see this region's nucleotide sequence