Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05970 and PGA1_c05980 are separated by 184 nucleotides PGA1_c05980 and PGA1_c05990 are separated by 222 nucleotides PGA1_c05990 and PGA1_c06000 are separated by 58 nucleotides PGA1_c06000 and PGA1_c06010 are separated by 40 nucleotides
PGA1_c05970: PGA1_c05970 - ATP-dependent zinc metalloprotease FtsH, at 609,640 to 611,553
_c05970
PGA1_c05980: PGA1_c05980 - Uncharacterized protein conserved in bacteria, at 611,738 to 612,316
_c05980
PGA1_c05990: PGA1_c05990 - formate--tetrahydrofolate ligase Fhs, at 612,539 to 614,215
_c05990
PGA1_c06000: PGA1_c06000 - chorismate mutase-like protein, at 614,274 to 614,579
_c06000
PGA1_c06010: PGA1_c06010 - bifunctional protein FolD, at 614,620 to 615,522
_c06010
Position (kb) 612
613
614
615 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 611.594 kb on + strand at 611.594 kb on + strand at 611.625 kb on + strand at 611.670 kb on + strand at 611.683 kb on + strand at 611.996 kb on + strand, within PGA1_c05980 at 612.047 kb on - strand, within PGA1_c05980 at 612.144 kb on + strand, within PGA1_c05980 at 612.235 kb on - strand, within PGA1_c05980 at 612.237 kb on + strand, within PGA1_c05980 at 612.240 kb on - strand, within PGA1_c05980 at 612.246 kb on + strand, within PGA1_c05980 at 612.264 kb on - strand at 612.330 kb on - strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.498 kb on + strand at 612.542 kb on + strand at 612.575 kb on + strand at 612.575 kb on + strand at 612.575 kb on + strand at 612.575 kb on + strand at 612.583 kb on - strand at 612.662 kb on - strand at 612.773 kb on + strand, within PGA1_c05990 at 612.931 kb on - strand, within PGA1_c05990 at 613.096 kb on + strand, within PGA1_c05990 at 613.139 kb on - strand, within PGA1_c05990 at 613.140 kb on + strand, within PGA1_c05990 at 613.176 kb on - strand, within PGA1_c05990 at 613.195 kb on + strand, within PGA1_c05990 at 613.293 kb on - strand, within PGA1_c05990 at 613.312 kb on + strand, within PGA1_c05990 at 613.320 kb on - strand, within PGA1_c05990 at 613.449 kb on + strand, within PGA1_c05990 at 613.462 kb on - strand, within PGA1_c05990 at 613.533 kb on - strand, within PGA1_c05990 at 613.533 kb on - strand, within PGA1_c05990 at 613.614 kb on + strand, within PGA1_c05990 at 613.650 kb on - strand, within PGA1_c05990 at 613.658 kb on - strand, within PGA1_c05990 at 613.708 kb on + strand, within PGA1_c05990 at 613.726 kb on - strand, within PGA1_c05990 at 613.737 kb on + strand, within PGA1_c05990 at 613.751 kb on - strand, within PGA1_c05990 at 613.852 kb on + strand, within PGA1_c05990 at 613.852 kb on + strand, within PGA1_c05990 at 613.857 kb on + strand, within PGA1_c05990 at 613.924 kb on + strand, within PGA1_c05990 at 614.185 kb on - strand at 614.205 kb on - strand at 614.307 kb on + strand, within PGA1_c06000 at 614.339 kb on + strand, within PGA1_c06000 at 614.348 kb on + strand, within PGA1_c06000 at 614.417 kb on + strand, within PGA1_c06000 at 614.497 kb on + strand, within PGA1_c06000 at 614.548 kb on + strand, within PGA1_c06000 at 614.586 kb on + strand at 614.586 kb on + strand at 614.586 kb on + strand at 614.586 kb on + strand at 614.586 kb on + strand at 614.586 kb on + strand at 614.594 kb on - strand at 614.594 kb on - strand at 614.618 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 611,594 + -0.2 611,594 + +0.0 611,625 + +0.9 611,670 + +1.1 611,683 + +0.4 611,996 + PGA1_c05980 0.45 +0.2 612,047 - PGA1_c05980 0.53 -1.0 612,144 + PGA1_c05980 0.70 -0.4 612,235 - PGA1_c05980 0.86 -0.2 612,237 + PGA1_c05980 0.86 -2.3 612,240 - PGA1_c05980 0.87 +1.4 612,246 + PGA1_c05980 0.88 -0.4 612,264 - +0.1 612,330 - +0.9 612,396 + +0.4 612,396 + -0.7 612,396 + +2.6 612,396 + +3.4 612,396 + -2.3 612,396 + -0.0 612,396 + +0.8 612,396 + -2.7 612,396 + -2.4 612,404 - +0.4 612,404 - +0.6 612,404 - +1.4 612,404 - -1.1 612,404 - -0.2 612,404 - -0.4 612,404 - +1.0 612,404 - +1.2 612,404 - -0.4 612,498 + -1.0 612,542 + +0.3 612,575 + +1.0 612,575 + +0.6 612,575 + +0.6 612,575 + +0.4 612,583 - -0.6 612,662 - -0.4 612,773 + PGA1_c05990 0.14 -1.4 612,931 - PGA1_c05990 0.23 -0.7 613,096 + PGA1_c05990 0.33 +0.6 613,139 - PGA1_c05990 0.36 +0.6 613,140 + PGA1_c05990 0.36 -1.4 613,176 - PGA1_c05990 0.38 -1.1 613,195 + PGA1_c05990 0.39 -1.2 613,293 - PGA1_c05990 0.45 -0.7 613,312 + PGA1_c05990 0.46 -0.7 613,320 - PGA1_c05990 0.47 -0.1 613,449 + PGA1_c05990 0.54 +0.2 613,462 - PGA1_c05990 0.55 +0.6 613,533 - PGA1_c05990 0.59 -2.2 613,533 - PGA1_c05990 0.59 -0.4 613,614 + PGA1_c05990 0.64 -1.0 613,650 - PGA1_c05990 0.66 +0.4 613,658 - PGA1_c05990 0.67 -1.0 613,708 + PGA1_c05990 0.70 -0.2 613,726 - PGA1_c05990 0.71 -1.0 613,737 + PGA1_c05990 0.71 +0.6 613,751 - PGA1_c05990 0.72 +1.1 613,852 + PGA1_c05990 0.78 -0.7 613,852 + PGA1_c05990 0.78 -0.5 613,857 + PGA1_c05990 0.79 +1.2 613,924 + PGA1_c05990 0.83 +0.3 614,185 - -0.3 614,205 - -0.4 614,307 + PGA1_c06000 0.11 -0.5 614,339 + PGA1_c06000 0.21 -1.5 614,348 + PGA1_c06000 0.24 -1.4 614,417 + PGA1_c06000 0.47 -1.3 614,497 + PGA1_c06000 0.73 -2.4 614,548 + PGA1_c06000 0.90 -1.1 614,586 + -0.2 614,586 + -0.4 614,586 + -1.7 614,586 + +0.3 614,586 + -0.3 614,586 + +0.0 614,594 - +1.4 614,594 - +0.6 614,618 - -0.4
Or see this region's nucleotide sequence